View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16453_low_19 (Length: 305)
Name: NF16453_low_19
Description: NF16453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16453_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 58 - 291
Target Start/End: Original strand, 40756950 - 40757181
Alignment:
| Q |
58 |
ttgtatatatgcttagatattatattctaggcgtggattctatgcttcgtatcttgaacttaccatatattattcatatcttgaactttgtcatcaaata |
157 |
Q |
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| T |
40756950 |
ttgtatatatgcttagatattatattctaggcgtggattttatgcttcgtatcttgaacttaccatatatgattcatatcttgaactttgtcatcaaata |
40757049 |
T |
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| Q |
158 |
tatttaaaatcttttctttgtaagagagacttttagaatcgtttttgcgttagtatcatcagcaagagcactaaaaaaggaaacctaaccctaacagagc |
257 |
Q |
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| T |
40757050 |
tatttaaaatcttttctttgta--agagacttttagaatcgtttttgcgttagtatcatcagcaagagcactaacaaaggaaacctaaccctaacagagc |
40757147 |
T |
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| Q |
258 |
ttgctatataactgataaggaagcatgttgttac |
291 |
Q |
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| T |
40757148 |
ttgctatataactgataaggaagcatgttgttac |
40757181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 40756486 - 40756540
Alignment:
| Q |
12 |
gaatataatagcactcaaccactaaatttaagtcattccaaagtaattgtatata |
66 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40756486 |
gaatataatagcactcaaccactaaatttaagtcattccaaagtaattgtatata |
40756540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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