View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16453_low_22 (Length: 279)
Name: NF16453_low_22
Description: NF16453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16453_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 260
Target Start/End: Complemental strand, 3313150 - 3312900
Alignment:
| Q |
10 |
acatcatcaagttcaacaagtgcctgttttgtgcaaagtcgttccttgatcatagcttttccccactcgatactatgcacctttatctttcttgttttga |
109 |
Q |
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|||||||||||| ||||||||||| |||||||| |||||||||||| |||||||||||||| |||| | |||||||||||||||||| |||||||||| |
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| T |
3313150 |
acatcatcaagtacaacaagtgcccgttttgtgacaagtcgttccttaatcatagcttttccaaactcaacactatgcacctttatcttccttgttttga |
3313051 |
T |
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| Q |
110 |
ggatatctgaaagaagttgttcttgtaaatcgattctgcccctatctttctcccaaacttgtctaatattagcaacgaagctttgatcttcaaattcata |
209 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
3313050 |
ggatatctgaaagaagttgttcttgtaaatcgattctacccctatctttctcccaaacttctctaatattagcaaggaagctttgatcttcaaattcata |
3312951 |
T |
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| Q |
210 |
acaaagattattgtagacgagtttggcaatggtgcttttgccaatccctcc |
260 |
Q |
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||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
3312950 |
acaaagattattgtagatgactttggcaatggtgcttttgccaatccctcc |
3312900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 45 - 257
Target Start/End: Original strand, 3393395 - 3393607
Alignment:
| Q |
45 |
aagtcgttccttgatcatagcttttccccactcgatactatgcacctttatctttcttgttttgaggatatctgaaagaagttgttcttgtaaatcgatt |
144 |
Q |
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|||||||| |||||||||||||||||| ||| | |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3393395 |
aagtcgttgcttgatcatagcttttccttgctcaacactaagcacctttatctttcttgttttcaggatatctgaaagaagttgttcttgtaaatcgatt |
3393494 |
T |
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| Q |
145 |
ctgcccctatctttctcccaaacttgtctaatattagcaacgaagctttgatcttcaaattcataacaaagattattgtagacgagtttggcaatggtgc |
244 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | || ||||||||| |||| |
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| T |
3393495 |
ctgcccctatctttctcccaaacttctctaatattagcaacgaagctttgatcttcaaattcataacaaagatcattgtatatgactttggcaatagtgc |
3393594 |
T |
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| Q |
245 |
ttttgccaatccc |
257 |
Q |
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| T |
3393595 |
ttttgccaatccc |
3393607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 3362523 - 3362276
Alignment:
| Q |
10 |
acatcatcaagttcaacaagtgcctgttttgtgcaaagtcgttccttgatcatagcttttccccactcgatactatgcacctttatctttcttgttttga |
109 |
Q |
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|||||||||||| || ||||| |||||| || |||| ||| ||||||||||| |||||| ||| | |||| |||||||||||||||||||||||| |
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| T |
3362523 |
acatcatcaagtacagcaagtatgcgttttgcgcgaagttgttgcttgatcatagtttttccttgctcaacactaagcacctttatctttcttgttttga |
3362424 |
T |
|
| Q |
110 |
ggatatctgaaagaagttgttcttgtaaatcgattctgcccctatctttctcccaaacttgtctaatattagcaacgaagctttgatcttcaaattcata |
209 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||| |
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| T |
3362423 |
ggatatctgaaagaaattgttcttgtaaatcgattctgcccctatctttctcccaaacttctctaatattagcaaggaagctttgattttcaaattcata |
3362324 |
T |
|
| Q |
210 |
acaaagattattgtagacgagtttggcaatggtgcttttgccaatccc |
257 |
Q |
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|||||||| |||||||| || ||||||||| ||||||||||||||||| |
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| T |
3362323 |
acaaagatcattgtagatgactttggcaatagtgcttttgccaatccc |
3362276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 9 - 260
Target Start/End: Complemental strand, 15801285 - 15801034
Alignment:
| Q |
9 |
gacatcatcaagttcaacaagtgcctgttttgtgcaaagtcgttccttgatcatagcttttccccactcgatactatgcacctttatctttcttgttttg |
108 |
Q |
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|
||||||||||||| |||||||||| |||| |||||||||||||| ||||||||||||||||||||||| | | |||||||||||| ||||||||||| |
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| T |
15801285 |
gacatcatcaagtataacaagtgcccgtttcgtgcaaagtcgttcattgatcatagcttttccccactcaacattatgcacctttacatttcttgtttta |
15801186 |
T |
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| Q |
109 |
aggatatctgaaagaagttgttcttgtaaatcgattctgcccctatctttctcccaaacttgtctaatattagcaacgaagctttgatcttcaaattcat |
208 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
15801185 |
aggatatctgaaagaagttgttcttgtaaatcaatttgccccctctctttctcccaaacttgtctaatattagcaaggaagctttgatcttcaaattcat |
15801086 |
T |
|
| Q |
209 |
aacaaagattattgtagacgagtttggcaatggtgcttttgccaatccctcc |
260 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15801085 |
aacaaagattattgtagacgactttggcaatggtgcttttgccaatccctcc |
15801034 |
T |
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