View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16453_low_23 (Length: 260)

Name: NF16453_low_23
Description: NF16453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16453_low_23
NF16453_low_23
[»] chr6 (4 HSPs)
chr6 (18-255)||(25741714-25741951)
chr6 (18-255)||(25747625-25747862)
chr6 (190-243)||(25779342-25779395)
chr6 (206-250)||(16530591-16530635)
[»] chr2 (5 HSPs)
chr2 (183-243)||(23864557-23864617)
chr2 (183-243)||(20571188-20571248)
chr2 (79-120)||(35790991-35791032)
chr2 (183-243)||(23757200-23757260)
chr2 (73-113)||(42223029-42223069)
[»] chr7 (1 HSPs)
chr7 (68-114)||(45687911-45687957)
[»] chr5 (2 HSPs)
chr5 (79-112)||(6527507-6527540)
chr5 (68-112)||(21144276-21144320)
[»] chr4 (1 HSPs)
chr4 (79-113)||(16734377-16734411)
[»] chr3 (2 HSPs)
chr3 (68-110)||(25125084-25125126)
chr3 (79-112)||(18359536-18359569)
[»] chr1 (2 HSPs)
chr1 (65-114)||(17890360-17890409)
chr1 (75-103)||(24107311-24107339)


Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 25741951 - 25741714
Alignment:
Q  18 tttttcaccttgaattaaaggattgaaattaaataaannnnnnnnacagataaatcggaactcgctaatattataggggtaaacatgtattaaccctgtt 117  Q
    ||||| |||||||||||||||||||||||||||||||        |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25741951 ttttttaccttgaattaaaggattgaaattaaataaattttttttacagataaatcgaaactcgctaatattataggggtaaacatgtattaaccctgtt 25741852  T
Q  118 atataagctgttgtgctgcttcatatgcaggattggatgaccgatttttgtggttcagctgtagagctggtaaatgatcggcccatcaggttgagcatgc 217  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25741851 atataagctgttgtgctgcttcatatgcaggattggatggccgatttttgtggttcagctgtagagctggtaaatgatcggcccatcaggttgagcatgc 25741752  T
Q  218 atttgatggtttggatttcctgcaatgtctgtgctgct 255  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  25741751 atttgatggtttggatttcctgcaatgtcggtgatgct 25741714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 25747862 - 25747625
Alignment:
Q  18 tttttcaccttgaattaaaggattgaaattaaataaannnnnnnnacagataaatcggaactcgctaatattataggggtaaacatgtattaaccctgtt 117  Q
    ||||| |||||||||||||||||||||||||||||||        |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25747862 ttttttaccttgaattaaaggattgaaattaaataaattttttttacagataaatcgaaactcgctaatattataggggtaaacatgtattaaccctgtt 25747763  T
Q  118 atataagctgttgtgctgcttcatatgcaggattggatgaccgatttttgtggttcagctgtagagctggtaaatgatcggcccatcaggttgagcatgc 217  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25747762 atataagctgttgtgctgcttcatatgcaggattggatggccgatttttgtggttcagctgtagagctggtaaatgatcggcccatcaggttgagcatgc 25747663  T
Q  218 atttgatggtttggatttcctgcaatgtctgtgctgct 255  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  25747662 atttgatggtttggatttcctgcaatgtcggtgatgct 25747625  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 25779342 - 25779395
Alignment:
Q  190 aatgatcggcccatcaggttgagcatgcatttgatggtttggatttcctgcaat 243  Q
    ||||||||||||| | ||||| || || |||||||| |||||||||||||||||    
T  25779342 aatgatcggcccaacgggttgcgcgtgtatttgatgctttggatttcctgcaat 25779395  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 16530591 - 16530635
Alignment:
Q  206 ggttgagcatgcatttgatggtttggatttcctgcaatgtctgtg 250  Q
    ||||| ||||| |||||||| |||||||||| |||||||||||||    
T  16530591 ggttgtgcatgtatttgatgctttggatttcttgcaatgtctgtg 16530635  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 23864617 - 23864557
Alignment:
Q  183 gctggtaaatgatcggcccatcaggttgagcatgcatttgatggtttggatttcctgcaat 243  Q
    |||||||||||||||| ||||| ||||| ||||| |||||||| |||||| ||||||||||    
T  23864617 gctggtaaatgatcggtccatcgggttgcgcatgtatttgatgctttggacttcctgcaat 23864557  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 20571188 - 20571248
Alignment:
Q  183 gctggtaaatgatcggcccatcaggttgagcatgcatttgatggtttggatttcctgcaat 243  Q
    |||||||||||||||| ||||| | ||| ||||| |||||||| |||||||| ||||||||    
T  20571188 gctggtaaatgatcggtccatcggtttgggcatgtatttgatgctttggattccctgcaat 20571248  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 35791032 - 35790991
Alignment:
Q  79 tcgctaatattataggggtaaacatgtattaaccctgttata 120  Q
    |||||||||||| ||||||||| ||||||||||||| |||||    
T  35791032 tcgctaatattacaggggtaaagatgtattaaccctattata 35790991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 23757260 - 23757200
Alignment:
Q  183 gctggtaaatgatcggcccatcaggttgagcatgcatttgatggtttggatttcctgcaat 243  Q
    |||||||||||||||| ||||| | ||| ||||| |||||||  |||||||| ||||||||    
T  23757260 gctggtaaatgatcggtccatcggtttgggcatgtatttgataatttggattccctgcaat 23757200  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 42223069 - 42223029
Alignment:
Q  73 cggaactcgctaatattataggggtaaacatgtattaaccc 113  Q
    ||||| || |||||||||||||||||||||| |||||||||    
T  42223069 cggaaatcactaatattataggggtaaacatatattaaccc 42223029  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 45687911 - 45687957
Alignment:
Q  68 taaatcggaactcgctaatattataggggtaaacatgtattaaccct 114  Q
    ||||||| || |||||||||||| |||||||||||||||||||||||    
T  45687911 taaatcgaaaatcgctaatattagaggggtaaacatgtattaaccct 45687957  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 6527507 - 6527540
Alignment:
Q  79 tcgctaatattataggggtaaacatgtattaacc 112  Q
    ||||||||||||||||||||||||||||||||||    
T  6527507 tcgctaatattataggggtaaacatgtattaacc 6527540  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 21144276 - 21144320
Alignment:
Q  68 taaatcggaactcgctaatattataggggtaaacatgtattaacc 112  Q
    |||| ||||| |||||||||||  |||||||||||||||||||||    
T  21144276 taaaccggaaatcgctaatattgcaggggtaaacatgtattaacc 21144320  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 16734377 - 16734411
Alignment:
Q  79 tcgctaatattataggggtaaacatgtattaaccc 113  Q
    ||||| |||||||||||||||||||||||||||||    
T  16734377 tcgcttatattataggggtaaacatgtattaaccc 16734411  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 110
Target Start/End: Original strand, 25125084 - 25125126
Alignment:
Q  68 taaatcggaactcgctaatattataggggtaaacatgtattaa 110  Q
    ||||||| || |||||||||||| |||||||||||||||||||    
T  25125084 taaatcgaaaatcgctaatattacaggggtaaacatgtattaa 25125126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 112
Target Start/End: Original strand, 18359536 - 18359569
Alignment:
Q  79 tcgctaatattataggggtaaacatgtattaacc 112  Q
    |||||||||||| |||||||||||||||||||||    
T  18359536 tcgctaatattacaggggtaaacatgtattaacc 18359569  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 17890360 - 17890409
Alignment:
Q  65 agataaatcggaactcgctaatattataggggtaaacatgtattaaccct 114  Q
    ||||||||||||| ||||||||||||   || ||||||||||||||||||    
T  17890360 agataaatcggaaatcgctaatattactaggataaacatgtattaaccct 17890409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 103
Target Start/End: Original strand, 24107311 - 24107339
Alignment:
Q  75 gaactcgctaatattataggggtaaacat 103  Q
    |||||||||||||||||||||||||||||    
T  24107311 gaactcgctaatattataggggtaaacat 24107339  T

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