View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16453_low_24 (Length: 259)
Name: NF16453_low_24
Description: NF16453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16453_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 4294026 - 4294268
Alignment:
| Q |
19 |
catgtcccataagtaccatgaagctataaactaaagcttccactctcaccctcctcaactaactagtaattccgtacccaaaaa---------caacatg |
109 |
Q |
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| T |
4294026 |
catgtcccataagtaccatgaagctataaactaaagcttccactctcaccctccccaactaaatagtaattccgtacccaaaaaagcacaaaacaacatg |
4294125 |
T |
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| Q |
110 |
aatcgtcacagccgtacacctatgatgaattttcaacaagtatatcctcatctctttcaacaagagatttcaaatttgggaaattctaggtacgtgttct |
209 |
Q |
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| T |
4294126 |
aatcgtcacattcgtacacctatgatgaattttcaacaagtatatcctcatctctttcaacaagagatttcaaatttgggaaattctaggtacgtgttct |
4294225 |
T |
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| Q |
210 |
tttttctactttaacttgtcaagtccttcaacatttcttttca |
252 |
Q |
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| T |
4294226 |
tttttctactttaacttgtcaagtccttcaacattttttttca |
4294268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 4311043 - 4311156
Alignment:
| Q |
134 |
atgaattttcaacaagtatatcctcatctctttcaacaagagatttcaaatttgggaaattctagg----tacgtgttcttttttctac-tttaacttgt |
228 |
Q |
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| T |
4311043 |
atgaattttcaacaatt---tcctcatctcttcctacaagagattcctattttgggaaactccaggtacatacatgttcttttttctacttttaacttgt |
4311139 |
T |
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| Q |
229 |
caagtccttcaacattt |
245 |
Q |
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| T |
4311140 |
taagtacatcaacattt |
4311156 |
T |
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