View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16453_low_25 (Length: 256)
Name: NF16453_low_25
Description: NF16453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16453_low_25 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 6013618 - 6013363
Alignment:
| Q |
1 |
aagaacataatcttatcatgcactctctacactgaattttttatcctatcttccctaaccattctctctcatctctcacccaccaaaggaagccaaattc |
100 |
Q |
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| T |
6013618 |
aagaacatattcttatcatgcactctctacactgaattttttatcctatcttccctaaccattctctctcatctctcacccaccaaaggaagacaaattc |
6013519 |
T |
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| Q |
101 |
actgtttatttttgtttcggtgacactacagttttaagttgcttcaaattgcaatgggtcttgaatcctatgagattctattcatatgggtatcaaaaat |
200 |
Q |
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| T |
6013518 |
aatgtttatttttgtttcgataacactacagttttaagtggcttcaaattgcaatgggtcttaaatcctatgaggttctattcatatgggtataaaaaat |
6013419 |
T |
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| Q |
201 |
tccttatgcttgtagctttaacatttcaactcaacaatattttaacaatctagctt |
256 |
Q |
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| T |
6013418 |
tccttatacttgtagctttaacatttcaactcaacaatattttaacaatctagctt |
6013363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 37423050 - 37422788
Alignment:
| Q |
1 |
aagaacataatcttatcatgcactctctacactgaattttttatcctatcttccctaaccattctctctcatctctc--acccaccaaaggaagccaaat |
98 |
Q |
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| T |
37423050 |
aagaacatgttcttatcatgcactctctacactgaattttttatcctatcttccctaaccattctctctcatctctctcacccaccaaaggaagccaaat |
37422951 |
T |
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| Q |
99 |
tcactgtttatttttgtttcggtgacactacagttttaagttgcttcaaattgcaatgggtcttgaatcctatgagattctattc-----atatgggtat |
193 |
Q |
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| T |
37422950 |
ccactgtttatgtttgtttcggtaacactacacttttaagtggcttcaaattgcaatgggttttgaatcctatgaggttctattcatatcatatgggtat |
37422851 |
T |
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| Q |
194 |
caaaaattccttatgcttgtagctttaacatttcaactcaacaatattttaacaatctagctt |
256 |
Q |
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| T |
37422850 |
caaaaattccttatgcttgtagctttaacatttcaactcaacaatattttaacaatctagctt |
37422788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 28976239 - 28976154
Alignment:
| Q |
1 |
aagaacataatcttatcatgcactctctacactgaatttttta-tcctatcttccctaaccattctctctcatctctcacccacca |
85 |
Q |
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|||||||| |||||||||||| ||||||| ||||||||||| | |||||||||||||| |||||||||||||||||||| |||| |
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| T |
28976239 |
aagaacatgctcttatcatgcattctctacgctgaatttttttgtactatcttccctaactattctctctcatctctcacctacca |
28976154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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