View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16453_low_27 (Length: 238)

Name: NF16453_low_27
Description: NF16453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16453_low_27
NF16453_low_27
[»] chr5 (5 HSPs)
chr5 (17-238)||(29643791-29644012)
chr5 (161-238)||(29649745-29649819)
chr5 (57-137)||(28186778-28186858)
chr5 (50-133)||(27998640-27998723)
chr5 (60-131)||(14911381-14911452)
[»] chr2 (9 HSPs)
chr2 (57-131)||(12026014-12026088)
chr2 (52-133)||(8197541-8197622)
chr2 (52-133)||(8202301-8202382)
chr2 (52-91)||(29159294-29159333)
chr2 (60-133)||(41197227-41197300)
chr2 (52-134)||(10516748-10516830)
chr2 (58-135)||(12474925-12475002)
chr2 (81-134)||(31959751-31959804)
chr2 (44-136)||(19855655-19855747)
[»] chr4 (10 HSPs)
chr4 (58-133)||(48174093-48174168)
chr4 (44-91)||(32339752-32339799)
chr4 (58-133)||(45209205-45209280)
chr4 (58-133)||(1777017-1777092)
chr4 (52-107)||(40018215-40018270)
chr4 (52-107)||(49686894-49686949)
chr4 (56-138)||(31403029-31403111)
chr4 (71-133)||(50869880-50869942)
chr4 (44-133)||(22420717-22420806)
chr4 (58-135)||(23906295-23906372)
[»] chr3 (4 HSPs)
chr3 (52-130)||(46367390-46367468)
chr3 (52-135)||(2340715-2340798)
chr3 (58-133)||(7895880-7895955)
chr3 (52-94)||(5852343-5852385)
[»] chr7 (5 HSPs)
chr7 (44-133)||(40008431-40008520)
chr7 (58-134)||(48919319-48919395)
chr7 (56-133)||(22349825-22349902)
chr7 (52-116)||(40138965-40139029)
chr7 (81-133)||(25891118-25891170)
[»] chr1 (8 HSPs)
chr1 (52-130)||(16943356-16943434)
chr1 (44-133)||(22319839-22319928)
chr1 (58-133)||(34792349-34792424)
chr1 (56-107)||(38869087-38869138)
chr1 (52-91)||(39525966-39526005)
chr1 (58-136)||(25715323-25715401)
chr1 (58-139)||(52921287-52921368)
chr1 (58-134)||(49347392-49347468)
[»] chr8 (2 HSPs)
chr8 (50-107)||(23023424-23023481)
chr8 (81-133)||(37077979-37078031)
[»] chr6 (3 HSPs)
chr6 (55-86)||(10257070-10257101)
chr6 (58-133)||(34143765-34143840)
chr6 (58-133)||(34156381-34156456)


Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 29644012 - 29643791
Alignment:
Q  17 acagacagcacaaactacttacaatgaatagagacatgatatatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataa 116  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29644012 acagacagcacaaactacttacaatgaatagatacatgatatatgataaaatattatgccgtcgtttgatccatgcagtagaccccacttaatacgataa 29643913  T
Q  117 agtttggttgttgttgtatttagaaaagggaaaactaaaactatcagaaaagacattggacacaaaaggaacaatgagctaaataagaaaatggatccaa 216  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29643912 agtttggttgttgttgtatttaggaaagggaaaactaaaactattagaaaagacattggacacgaaaggaacaatgagctaaataagaaaatggatccaa 29643813  T
Q  217 acaatattaaacatatagcaat 238  Q
    ||||||||||||||||||||||    
T  29643812 acaatattaaacatatagcaat 29643791  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 29649819 - 29649745
Alignment:
Q  161 cagaaaagacattggacacaaaaggaacaatgagctaaataagaaaatggatccaaacaatattaaacatatagcaat 238  Q
    |||||||||| || ||||| ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  29649819 cagaaaagacctttgacacgaaaggaacaatgagct---taagaaaatggatccaaacaatattaaacatatagcaat 29649745  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 137
Target Start/End: Complemental strand, 28186858 - 28186778
Alignment:
Q  57 atatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgtattt 137  Q
    |||||||| || ||||||||||||||||||||||||||  ||||| ||| |||  ||||| | ||||||||||||||||||    
T  28186858 atatgatagaacattatggcgtcgtttgatccatgcagccgaccctactcaatgggataaggcttggttgttgttgtattt 28186778  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 27998640 - 27998723
Alignment:
Q  50 acatgatatatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgt 133  Q
    ||||||||||||||| ||||||||| |||||||||||||||| |   ||||||||||| |  ||||  ||||||||| ||||||    
T  27998640 acatgatatatgatagaatattatgacgtcgtttgatccatgtaaccgaccccacttagtgggatatggtttggttgatgttgt 27998723  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 14911381 - 14911452
Alignment:
Q  60 tgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgtt 131  Q
    ||||| |||| ||||||||| ||||||||||| ||  |||||||||||||   |||| ||||||||||||||    
T  14911381 tgatagaatactatggcgtcatttgatccatgtagccgaccccacttaatggaataaggtttggttgttgtt 14911452  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 12026088 - 12026014
Alignment:
Q  57 atatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgtt 131  Q
    |||||||||||||||||  |||||||||||||||| ||  ||||||||||| |  ||||||||||||||||||||    
T  12026088 atatgataaaatattataacgtcgtttgatccatgtagctgaccccacttagtgggataaagtttggttgttgtt 12026014  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 8197622 - 8197541
Alignment:
Q  52 atgatatatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgt 133  Q
    ||||||||||||| |||||||||||||||||||||||||| ||  ||||| ||||| |  ||||| | ||||||||||||||    
T  8197622 atgatatatgatagaatattatggcgtcgtttgatccatgtagccgaccctacttagtgggataatgcttggttgttgttgt 8197541  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 8202382 - 8202301
Alignment:
Q  52 atgatatatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgt 133  Q
    ||||||||||||| |||||||||||||||||||||||||| ||  ||||| ||||| |  ||||| | ||||||||||||||    
T  8202382 atgatatatgatagaatattatggcgtcgtttgatccatgtagccgaccctacttagtgggataatgcttggttgttgttgt 8202301  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 91
Target Start/End: Original strand, 29159294 - 29159333
Alignment:
Q  52 atgatatatgataaaatattatggcgtcgtttgatccatg 91  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  29159294 atgatatttgataaaatattatggcgtcgtttgatccatg 29159333  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 41197300 - 41197227
Alignment:
Q  60 tgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgt 133  Q
    ||||| || ||||||||||| ||||||||||| ||| |||||||||| ||  ||||| | ||||||||||||||    
T  41197300 tgatagaacattatggcgtcatttgatccatgtagtcgaccccacttgatgggataaggcttggttgttgttgt 41197227  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 10516830 - 10516748
Alignment:
Q  52 atgatatatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgta 134  Q
    ||||| |||||||||||||||||||||  ||||||||||| ||  || | |||||| |  ||||| | |||||||||||||||    
T  10516830 atgatttatgataaaatattatggcgtaatttgatccatgtagctgatctcacttagtgggataaggcttggttgttgttgta 10516748  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 12475002 - 12474925
Alignment:
Q  58 tatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgtat 135  Q
    ||||||| || | ||||||||| ||||||||||| ||  ||||||||||| |  ||||| | ||||||||||||||||    
T  12475002 tatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgtat 12474925  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 31959751 - 31959804
Alignment:
Q  81 tttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgta 134  Q
    ||||||||||| || |||||||||||| || ||||| | |||||||||||||||    
T  31959751 tttgatccatgtagcagaccccacttagtaggataaggcttggttgttgttgta 31959804  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 19855655 - 19855747
Alignment:
Q  44 atagagacatgatatatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgtatt 136  Q
    ||||| ||||| ||||||||| |  ||||||||| | ||  ||||||| ||  ||||||||||| || |||||||  ||||||||||||||||    
T  19855655 atagaaacatggtatatgatagagcattatggcgccattcaatccatgtagccgaccccacttagtaggataaagcgtggttgttgttgtatt 19855747  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 48174168 - 48174093
Alignment:
Q  58 tatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgt 133  Q
    |||||||||| ||||||||||| ||||||||||| || |||||||||||| |  ||||| | ||||||||||||||    
T  48174168 tatgataaaacattatggcgtcatttgatccatgtagcagaccccacttagtgggataaggcttggttgttgttgt 48174093  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 32339752 - 32339799
Alignment:
Q  44 atagagacatgatatatgataaaatattatggcgtcgtttgatccatg 91  Q
    ||||||| ||||||||||||| || |||||||||||||||||||||||    
T  32339752 atagagatatgatatatgatagaaaattatggcgtcgtttgatccatg 32339799  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 45209280 - 45209205
Alignment:
Q  58 tatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgt 133  Q
    ||||||| ||||||||||||| |||||||||||| ||  ||||||||||| |  ||||| | ||||||||||||||    
T  45209280 tatgatagaatattatggcgtagtttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 45209205  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 1777092 - 1777017
Alignment:
Q  58 tatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgt 133  Q
    ||||||| || | ||||||||| ||||||||||| ||  |||||||||||||  ||||| | ||||||||||||||    
T  1777092 tatgatagaacagtatggcgtcatttgatccatgtagccgaccccacttaatgggataaggcttggttgttgttgt 1777017  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 40018270 - 40018215
Alignment:
Q  52 atgatatatgataaaatattatggcgtcgtttgatccatgcagtagaccccactta 107  Q
    ||||||||||||| || |||| |||||||||||||||||| ||  |||||||||||    
T  40018270 atgatatatgatagaacattacggcgtcgtttgatccatgtagccgaccccactta 40018215  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 49686894 - 49686949
Alignment:
Q  52 atgatatatgataaaatattatggcgtcgtttgatccatgcagtagaccccactta 107  Q
    ||||||||||||  |||||||||||||||||||| ||||| ||  |||||||||||    
T  49686894 atgatatatgatggaatattatggcgtcgtttgaaccatgtagccgaccccactta 49686949  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 31403111 - 31403029
Alignment:
Q  56 tatatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgtattta 138  Q
    ||||||||| |  ||||||| || | |||||||||| ||  ||||||||||| || ||||||  |||||||||||||||||||    
T  31403111 tatatgatagagcattatggtgttgcttgatccatgtagacgaccccacttagtaggataaaacttggttgttgttgtattta 31403029  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 50869942 - 50869880
Alignment:
Q  71 tatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgt 133  Q
    |||||||||||||||| |||||||  ||||||||||| |  ||||| | ||||||||||||||    
T  50869942 tatggcgtcgtttgattcatgcagctgaccccacttagtgggataaggcttggttgttgttgt 50869880  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 22420806 - 22420717
Alignment:
Q  44 atagagacatgatatatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgt 133  Q
    ||||||| ||| || |||||| |  |||||||||| |||||||| ||| ||| ||||||||||| |  ||||| | ||||||||||||||    
T  22420806 atagagatatggtaaatgatagagcattatggcgttgtttgatctatgtagttgaccccacttagtgggataaggcttggttgttgttgt 22420717  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 135
Target Start/End: Complemental strand, 23906372 - 23906295
Alignment:
Q  58 tatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgtat 135  Q
    ||||||| || | ||||||||| ||||||||||| ||  ||||||||||| |  ||||| | ||||||||||||||||    
T  23906372 tatgatagaacactatggcgtcatttgatccatgtagctgaccccacttagtgggataaggcttggttgttgttgtat 23906295  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 46367468 - 46367390
Alignment:
Q  52 atgatatatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgt 130  Q
    ||||||||||||| || |||||| |||||||||||||||| ||   ||||||||||||  ||||||| |||||||||||    
T  46367468 atgatatatgatagaacattatgacgtcgtttgatccatgtagcctaccccacttaattggataaagcttggttgttgt 46367390  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 2340798 - 2340715
Alignment:
Q  52 atgatatatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgtat 135  Q
    ||||||||||||| || |||||||||| |||||||||||| ||   |||||||||| |   |||| | ||||||||||||||||    
T  2340798 atgatatatgatagaacattatggcgttgtttgatccatgaagccaaccccacttagttgtataaggattggttgttgttgtat 2340715  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 7895955 - 7895880
Alignment:
Q  58 tatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgt 133  Q
    ||||||| || | ||||||||| ||||||||||| ||  |||||||||||||  ||||| | ||||||||||||||    
T  7895955 tatgatagaacactatggcgtcatttgatccatgtagccgaccccacttaatgggataaggcttggttgttgttgt 7895880  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 5852385 - 5852343
Alignment:
Q  52 atgatatatgataaaatattatggcgtcgtttgatccatgcag 94  Q
    ||||||||||||| | ||||||| |||||||||||||||||||    
T  5852385 atgatatatgatagagtattatgacgtcgtttgatccatgcag 5852343  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 40008520 - 40008431
Alignment:
Q  44 atagagacatgatatatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgt 133  Q
    ||||||||||||||||||||| || |||||| ||| |||||||||||| ||  |||| ||||||||  |||||   ||||||||||||||    
T  40008520 atagagacatgatatatgatagaacattatgtcgttgtttgatccatgtagctgacctcacttaatgagataagacttggttgttgttgt 40008431  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 48919319 - 48919395
Alignment:
Q  58 tatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgta 134  Q
    |||||||||  | ||||||||| ||||||||||| ||| |||||||||||||  ||||| | |||||||||||||||    
T  48919319 tatgataaaccactatggcgtcatttgatccatgtagtcgaccccacttaatgggataaggcttggttgttgttgta 48919395  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 22349825 - 22349902
Alignment:
Q  56 tatatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgt 133  Q
    ||||||||| |||| ||||||||| ||||||||||| ||| ||||||||||| |  ||||| | ||| ||||||||||    
T  22349825 tatatgatagaatactatggcgtcatttgatccatgtagtcgaccccacttagtgggataaggcttgattgttgttgt 22349902  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 40139029 - 40138965
Alignment:
Q  52 atgatatatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataa 116  Q
    |||| |||||||| ||||||||| |||| ||||||||||| || |||||||||||| | ||||||    
T  40139029 atgacatatgatagaatattatgacgtcatttgatccatgtagcagaccccacttagtgcgataa 40138965  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 25891118 - 25891170
Alignment:
Q  81 tttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgt 133  Q
    ||||||||||| ||  ||||||||||| |||||||| | ||||||||||||||    
T  25891118 tttgatccatgtagccgaccccacttagtacgataaggcttggttgttgttgt 25891170  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 130
Target Start/End: Original strand, 16943356 - 16943434
Alignment:
Q  52 atgatatatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgt 130  Q
    ||||||||||||| || ||||||||| ||||||||||||| ||| |||||||| || |  ||||| | |||||||||||    
T  16943356 atgatatatgatagaacattatggcggcgtttgatccatgtagtcgaccccacctagtgagataatgcttggttgttgt 16943434  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 22319928 - 22319839
Alignment:
Q  44 atagagacatgatatatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgt 133  Q
    ||||||| |||||||| |||| ||||| |||| ||||||| || |||||||  || |||||||| |  ||||||||||| ||||||||||    
T  22319928 atagagatatgatatacgatagaatatcatggtgtcgtttaatacatgcagccgatcccacttagtgggataaagtttgtttgttgttgt 22319839  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 34792424 - 34792349
Alignment:
Q  58 tatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgt 133  Q
    ||||||| || | ||||||||| ||||||||||| ||  |||||||||||||  ||||| | ||||||||||||||    
T  34792424 tatgatagaacactatggcgtcatttgatccatgtagccgaccccacttaatgggataaggcttggttgttgttgt 34792349  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 38869087 - 38869138
Alignment:
Q  56 tatatgataaaatattatggcgtcgtttgatccatgcagtagaccccactta 107  Q
    ||||||||| || ||||||||||||||||||||||| ||  |||||||||||    
T  38869087 tatatgatagaacattatggcgtcgtttgatccatgtagccgaccccactta 38869138  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 91
Target Start/End: Original strand, 39525966 - 39526005
Alignment:
Q  52 atgatatatgataaaatattatggcgtcgtttgatccatg 91  Q
    |||||| |||||| ||||||||||||||||||||||||||    
T  39525966 atgatagatgatagaatattatggcgtcgtttgatccatg 39526005  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 25715401 - 25715323
Alignment:
Q  58 tatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgtatt 136  Q
    ||||||| |||||||||||||  ||||||||||| ||  |||| |||||| |  ||||| | |||||||||||||||||    
T  25715401 tatgatagaatattatggcgtaatttgatccatgtagccgacctcacttagtgggataaggcttggttgttgttgtatt 25715323  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 52921287 - 52921368
Alignment:
Q  58 tatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgtatttag 139  Q
    ||||||| || | ||| ||||| ||||||||||| ||  ||||||||||| |  ||||| | ||||||||||||||||||||    
T  52921287 tatgatagaacactattgcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgtatttag 52921368  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 49347468 - 49347392
Alignment:
Q  58 tatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgta 134  Q
    ||||||| || | ||||||||| ||||||||||| ||  ||||||||||| |  ||||| | |||||||||||||||    
T  49347468 tatgatagaacactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgta 49347392  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 23023424 - 23023481
Alignment:
Q  50 acatgatatatgataaaatattatggcgtcgtttgatccatgcagtagaccccactta 107  Q
    ||||||||||||||| ||||||||| |||||||||||||||| |   |||||||||||    
T  23023424 acatgatatatgatagaatattatgacgtcgtttgatccatgtaaccgaccccactta 23023481  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 37077979 - 37078031
Alignment:
Q  81 tttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgt 133  Q
    ||||||||||||||  |||||||||||||  ||||||  ||||||||||||||    
T  37077979 tttgatccatgcagccgaccccacttaatgggataaaacttggttgttgttgt 37078031  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 86
Target Start/End: Complemental strand, 10257101 - 10257070
Alignment:
Q  55 atatatgataaaatattatggcgtcgtttgat 86  Q
    ||||||||||||||||||||||||||||||||    
T  10257101 atatatgataaaatattatggcgtcgtttgat 10257070  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 34143840 - 34143765
Alignment:
Q  58 tatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgt 133  Q
    ||||||| || | ||||||||| ||||||||||| ||| ||||||||||| |  ||||| | ||||||||||||||    
T  34143840 tatgatagaacactatggcgtcatttgatccatgtagtcgaccccacttattgggataaggcttggttgttgttgt 34143765  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 34156456 - 34156381
Alignment:
Q  58 tatgataaaatattatggcgtcgtttgatccatgcagtagaccccacttaatacgataaagtttggttgttgttgt 133  Q
    ||||||| || | ||||||||| ||||||||||| ||| ||||||||||| |  ||||| | ||||||||||||||    
T  34156456 tatgatagaacactatggcgtcatttgatccatgtagtcgaccccacttattgggataaggcttggttgttgttgt 34156381  T

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