View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16453_low_3 (Length: 737)
Name: NF16453_low_3
Description: NF16453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16453_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 681; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 14 - 722
Target Start/End: Original strand, 52771277 - 52771985
Alignment:
| Q |
14 |
agagtgagatttgaagagccaactctttagattgaaatccagccatttgaacaatggttggactgtagtacatcactgtgttaatgccagtaaactgttg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52771277 |
agagtgagatttgaagagccaactctttagattgaaatccagccatttgaacaatggttggactgtagtacatcactgtgttaatgccagtaaactgttg |
52771376 |
T |
|
| Q |
114 |
gaacaccatcaatcctgctccaaccatgaatgctagtctgatttctttagatttaaaaacatctttaaatttgacattcatatttttctgtctgtcttgt |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52771377 |
gaacaccatcaatcctgctccaaccatgaatgctagtctgatttctttagatttaaaaacatctttaaatttgacattcatatttttctgtctgtcttgt |
52771476 |
T |
|
| Q |
214 |
tctgcctcagctgttagaaaatcaacttcgtcttcaagacgagccaagtcatagatgttggaaatgacatcaacagcttcattctttctattcttcataa |
313 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52771477 |
tctgcctcagctgttagaaaatcaacttcgtcttcaagacgagccaagtcatagatgttggaaatgacatcaacagcttcattctttctattcttcataa |
52771576 |
T |
|
| Q |
314 |
aaagccatcttggggattcagggagggaaagtatgagaatgaatggaacaagtgcagggacagctggaacacccaacatccaacgccaagtaccagggac |
413 |
Q |
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||||||||||||| |||||||||||| |||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
52771577 |
aaagccatcttggtgattcagggaggaaaagcatgagaatgaattgaacaagtgcagggacagctgaaacacccaacatccaacgccaagtaccagggac |
52771676 |
T |
|
| Q |
414 |
acgcgtaaaggcgaggttaactatgtaggaaaggagttgtccactggtgatcatgagggaattagtactgactaatgaacctctgatttcggaaggtgat |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52771677 |
acgcgtaaaggcgaggttaactatgtaggaaaggagttgtccactggtgatcatgagggaattagtactgactaatgaacctctgatttcggaaggtgat |
52771776 |
T |
|
| Q |
514 |
gcttcggcaatgtagacgggagcggtgacagaggcaatgccgacacctaaaccaacaagaaggcgtccgattatgagaatgtaaggatcaggcgcggcag |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52771777 |
gcttcggcaatgtagacgggagcggtgacagaggcaatgccgacacctaaaccaacaagaaggcgtccgattatgagaatgtaaggatcaggcgcggcag |
52771876 |
T |
|
| Q |
614 |
ccataccaattgctccaataatgaagatgacatccgcgatgagagttgccttctttcgtccataagcatcgttaatccaaccacctgttgctgctccaac |
713 |
Q |
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| T |
52771877 |
ccataccaattgctccaataatgaagatgacatccgcgatgagagttgccttctttcgtccgtaagcatcgttaatccaaccacctattgctgctccaac |
52771976 |
T |
|
| Q |
714 |
tattgcacc |
722 |
Q |
| |
|
||||||||| |
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|
| T |
52771977 |
tattgcacc |
52771985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 585 - 722
Target Start/End: Original strand, 52768909 - 52769046
Alignment:
| Q |
585 |
tatgagaatgtaaggatcaggcgcggcagccataccaattgctccaataatgaagatgacatccgcgatgagagttgccttctttcgtccataagcatcg |
684 |
Q |
| |
|
||||||||| |||||||| ||||| |||||||| |||||||||| | ||| ||||| ||||| || |||| ||||||||||||| ||||||| ||| |
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| T |
52768909 |
tatgagaatataaggatctggcgcagcagccatgacaattgctccgagaataaagataacatctgcaatgatggttgccttctttcttccataacgatca |
52769008 |
T |
|
| Q |
685 |
ttaatccaaccacctgttgctgctccaactattgcacc |
722 |
Q |
| |
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|| |||||||||||| |||||||||||| |||||||| |
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| T |
52769009 |
ttcatccaaccacctactgctgctccaacaattgcacc |
52769046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 52767327 - 52767403
Alignment:
| Q |
19 |
gagatttgaagagccaactctttagattgaaatccagccatttgaacaatggttggactgtagtacatcactgtgtt |
95 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
52767327 |
gagagttgaagagccaactcattagagtgaaagccagccatttggacaattgttggactgtagtacatcactgtgtt |
52767403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 9e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 451 - 698
Target Start/End: Complemental strand, 390337 - 390090
Alignment:
| Q |
451 |
tgtccactggtgatcatgagggaattagtactgactaatgaacctctgatttcggaaggtgatgcttcggcaatgtagacgggagcggtgacagaggcaa |
550 |
Q |
| |
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||||||| ||||||||||||| |||||| ||||||||||| ||||||||||| || |||| |||| ||||||||||| ||||| || ||||| || | |
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| T |
390337 |
tgtccaccggtgatcatgaggacattagtgctgactaatgagcctctgatttcagagggtgcgacttctgcaatgtagacaggagcagtaacagaagcta |
390238 |
T |
|
| Q |
551 |
tgccgacacctaaaccaacaagaaggcgtccgattatgagaatgtaaggatcaggcgcggcagccataccaattgctccaataatgaagatgacatccgc |
650 |
Q |
| |
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|||| ||||| |||||||| ||||| ||||| |||||||| ||||||||||| || |||||||| ||||||||| | ||| ||||| ||||| || |
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| T |
390237 |
tgccaacacccaaaccaacgagaagacgtcctgctatgagaacataaggatcaggtgcagcagccatgagaattgctccgagaataaagataacatcagc |
390138 |
T |
|
| Q |
651 |
gatgagagttgccttctttcgtccataagcatcgttaatccaaccacc |
698 |
Q |
| |
|
| ||| || |||||||||| ||||||||| || |||| ||||||||| |
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|
| T |
390137 |
taagagtgtggccttctttcttccataagcgtcattaagccaaccacc |
390090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 392497 - 392439
Alignment:
| Q |
52 |
ccagccatttgaacaatggttggactgtagtacatcactgtgttaatgccagtaaactg |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||| || || |||||||| |
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|
| T |
392497 |
ccagccatttgaacaatggttggactgtagtacatcaccgtgtttatacctgtaaactg |
392439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 490 - 722
Target Start/End: Original strand, 38013775 - 38014007
Alignment:
| Q |
490 |
gaacctctgatttcggaaggtgatgcttcggcaatgtagacgggagcggtgacagaggcaatgccgacacctaaaccaacaagaaggcgtccgattatga |
589 |
Q |
| |
|
||||| || ||||| || ||||| | ||| ||||| || || ||||| ||||||||||| | || ||||| | ||||||||||| || || | ||||| |
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|
| T |
38013775 |
gaaccccttatttctgatggtgaggattctgcaatatatacaggagccgtgacagaggctacacccacaccaatgccaacaagaagacggccaagtatga |
38013874 |
T |
|
| Q |
590 |
gaatgtaaggatcaggcgcggcagccataccaattgctccaataatgaagatgacatccgcgatgagagttgccttctttcgtccataagcatcgttaat |
689 |
Q |
| |
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||| || | ||| ||||||| ||||||| ||| || ||||| | | |||| ||||| || | || ||||||||||| |||||| ||||||| ||||| |
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|
| T |
38013875 |
gaacatatgcatctggcgcggaagccataacaactgatccaagagtaaagacaacatcagcactaagtgttgccttcttacgtccaaaagcatcattaat |
38013974 |
T |
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| Q |
690 |
ccaaccacctgttgctgctccaactattgcacc |
722 |
Q |
| |
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||| ||||||||||||||||||| |||||||| |
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| T |
38013975 |
ccagccacctgttgctgctccaataattgcacc |
38014007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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