View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16453_low_9 (Length: 496)

Name: NF16453_low_9
Description: NF16453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16453_low_9
NF16453_low_9
[»] chr2 (25 HSPs)
chr2 (3-479)||(27148710-27149189)
chr2 (292-424)||(27149432-27149569)
chr2 (292-440)||(10445582-10445732)
chr2 (292-440)||(35397325-35397470)
chr2 (292-440)||(8039870-8040019)
chr2 (292-441)||(33528759-33528908)
chr2 (292-401)||(2869832-2869943)
chr2 (292-424)||(23078609-23078742)
chr2 (292-441)||(20522030-20522179)
chr2 (292-440)||(34682472-34682621)
chr2 (381-440)||(21629762-21629822)
chr2 (292-408)||(31055887-31056001)
chr2 (292-408)||(10707389-10707505)
chr2 (300-424)||(34388686-34388810)
chr2 (382-433)||(40014746-40014799)
chr2 (363-440)||(16940416-16940496)
chr2 (363-440)||(17011081-17011161)
chr2 (292-409)||(28259315-28259430)
chr2 (342-424)||(36757947-36758031)
chr2 (342-424)||(42039855-42039939)
chr2 (292-440)||(17865014-17865162)
chr2 (298-431)||(15904031-15904174)
chr2 (292-402)||(14699132-14699244)
chr2 (342-403)||(16388297-16388358)
chr2 (292-408)||(33117981-33118095)
[»] chr7 (17 HSPs)
chr7 (1-165)||(15486207-15486374)
chr7 (292-440)||(3047063-3047215)
chr7 (292-441)||(28617363-28617513)
chr7 (292-441)||(9235693-9235844)
chr7 (292-433)||(4796805-4796949)
chr7 (292-440)||(20283900-20284048)
chr7 (292-440)||(23403151-23403299)
chr7 (292-441)||(46516448-46516598)
chr7 (342-440)||(2580199-2580299)
chr7 (342-440)||(5817461-5817559)
chr7 (292-441)||(29159612-29159762)
chr7 (298-444)||(9190152-9190298)
chr7 (292-440)||(49091472-49091621)
chr7 (298-440)||(9185307-9185449)
chr7 (342-424)||(21988733-21988817)
chr7 (391-440)||(2647962-2648013)
chr7 (381-438)||(33332675-33332734)
[»] chr8 (11 HSPs)
chr8 (291-440)||(5990698-5990843)
chr8 (303-440)||(7493210-7493352)
chr8 (292-440)||(9765958-9766106)
chr8 (292-440)||(6127029-6127179)
chr8 (298-428)||(5702627-5702757)
chr8 (387-440)||(6813489-6813543)
chr8 (388-440)||(28307368-28307421)
chr8 (381-440)||(23799803-23799863)
chr8 (292-438)||(26403368-26403515)
chr8 (388-447)||(26287706-26287767)
chr8 (388-447)||(26312957-26313018)
[»] chr5 (15 HSPs)
chr5 (289-440)||(42127545-42127695)
chr5 (292-441)||(19588556-19588705)
chr5 (292-440)||(28832071-28832218)
chr5 (292-440)||(11181970-11182120)
chr5 (298-424)||(14520056-14520182)
chr5 (292-441)||(3880112-3880259)
chr5 (383-440)||(10281673-10281732)
chr5 (292-438)||(17004098-17004244)
chr5 (297-424)||(34842434-34842558)
chr5 (381-440)||(42126632-42126693)
chr5 (328-451)||(6741654-6741779)
chr5 (342-440)||(28537430-28537530)
chr5 (387-440)||(33031178-33031231)
chr5 (388-440)||(36932582-36932635)
chr5 (342-440)||(15464343-15464444)
[»] chr4 (16 HSPs)
chr4 (292-440)||(25862160-25862308)
chr4 (299-440)||(5112052-5112194)
chr4 (289-433)||(1983433-1983577)
chr4 (292-442)||(54866991-54867143)
chr4 (292-447)||(5269329-5269488)
chr4 (292-440)||(10047190-10047338)
chr4 (292-424)||(16624147-16624279)
chr4 (289-424)||(5147504-5147639)
chr4 (292-357)||(38152576-38152641)
chr4 (289-439)||(39245805-39245956)
chr4 (292-424)||(16630818-16630950)
chr4 (342-441)||(34496009-34496109)
chr4 (292-372)||(37781743-37781822)
chr4 (289-408)||(5143104-5143221)
chr4 (342-409)||(5396860-5396927)
chr4 (388-440)||(24333621-24333675)
[»] chr6 (12 HSPs)
chr6 (292-441)||(31979323-31979472)
chr6 (298-440)||(5572740-5572882)
chr6 (292-441)||(10077303-10077452)
chr6 (342-442)||(27165513-27165614)
chr6 (292-425)||(22963526-22963659)
chr6 (292-425)||(23824734-23824867)
chr6 (342-409)||(21355882-21355949)
chr6 (292-408)||(5017606-5017724)
chr6 (381-440)||(31086687-31086749)
chr6 (346-440)||(31077146-31077240)
chr6 (392-433)||(21801584-21801627)
chr6 (298-424)||(31936414-31936540)
[»] chr1 (12 HSPs)
chr1 (292-440)||(775483-775631)
chr1 (342-440)||(17345704-17345805)
chr1 (292-441)||(29651619-29651770)
chr1 (292-440)||(40816870-40817020)
chr1 (363-440)||(13604830-13604909)
chr1 (302-409)||(32889282-32889387)
chr1 (293-440)||(9023971-9024116)
chr1 (289-433)||(19072744-19072889)
chr1 (289-433)||(19120634-19120779)
chr1 (342-440)||(50521288-50521389)
chr1 (298-424)||(21536714-21536839)
chr1 (342-423)||(26645083-26645166)
[»] chr3 (20 HSPs)
chr3 (289-440)||(48438025-48438176)
chr3 (381-440)||(18554502-18554563)
chr3 (292-440)||(27038100-27038249)
chr3 (337-421)||(4387102-4387186)
chr3 (292-440)||(40592911-40593063)
chr3 (382-440)||(4387249-4387307)
chr3 (292-424)||(30709919-30710051)
chr3 (292-440)||(27986574-27986720)
chr3 (381-440)||(3323778-3323839)
chr3 (381-440)||(6794927-6794988)
chr3 (298-424)||(36028932-36029058)
chr3 (342-428)||(1417665-1417753)
chr3 (292-424)||(27026772-27026904)
chr3 (387-440)||(37466102-37466157)
chr3 (342-429)||(1417088-1417177)
chr3 (387-442)||(2074881-2074938)
chr3 (292-405)||(8370615-8370726)
chr3 (288-409)||(35925326-35925445)
chr3 (289-357)||(3328481-3328547)
chr3 (342-440)||(33386842-33386942)
[»] scaffold0184 (1 HSPs)
scaffold0184 (292-441)||(29620-29778)
[»] scaffold0078 (2 HSPs)
scaffold0078 (292-441)||(43066-43224)
scaffold0078 (297-424)||(23357-23483)
[»] scaffold0006 (1 HSPs)
scaffold0006 (363-440)||(133487-133566)
[»] scaffold0148 (1 HSPs)
scaffold0148 (292-432)||(10546-10688)
[»] scaffold0087 (2 HSPs)
scaffold0087 (298-409)||(44105-44212)
scaffold0087 (342-409)||(37018-37085)
[»] scaffold1805 (1 HSPs)
scaffold1805 (342-409)||(1252-1319)
[»] scaffold0036 (1 HSPs)
scaffold0036 (298-424)||(85512-85637)
[»] scaffold0176 (1 HSPs)
scaffold0176 (381-440)||(17077-17138)
[»] scaffold0098 (1 HSPs)
scaffold0098 (342-422)||(45085-45166)


Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 3 - 479
Target Start/End: Original strand, 27148710 - 27149189
Alignment:
Q  3 aatagtttcaaagagtgtggaaacggag---aagagaattatcagctctggagggtaaagatgatgaatcaaccaccgtagaagggtgtgaaacggcaat 99  Q
    ||||||| ||||||||||||||||||||   |||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||| | | ||    
T  27148710 aatagttccaaagagtgtggaaacggaggagaagagaattaccagctctggagggtagagatgatgaatcagccaccgtagaagggtgtgaaatgaccat 27148809  T
Q  100 gaaaactaaaggaaagaggtgattggagcaacgtcggagcttggccggagaaagattaggttgccgnnnnnnncggttacaggggacatttccnnnnnnn 199  Q
    ||||||| ||||||||||||||| ||||||| | ||||||||||| |||||||||| |||||||||       ||||||||||  |||||||            
T  27148810 gaaaactgaaggaaagaggtgatcggagcaatgccggagcttggctggagaaagatgaggttgccgaaaaaaacggttacaggtcacatttctagagaga 27148909  T
Q  200 nnnnnttttagaaaatccattagttgttggaaatagtggaggcattgagcaatcctgtcatatttctttgtactactacactctcaaggtgttttgaata 299  Q
         |||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||    
T  27148910 gagagttttagaaaatccattagttgccggaaatagtggaggcattgagcaatcctgtcgtatttctttgtactactacactcttatggtgttttgaata 27149009  T
Q  300 tgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacac 399  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  27149010 tgcttgtggtgttgctttacaaatagatttagatctatgttattgttgttgttgcttgatgctactttactcattgattatcactttctttgctccacac 27149109  T
Q  400 atctttgtttgattggtgtgattttgtccgaattaacaacagatatatatgaaagacttcatatggtgttgtgatagaag 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27149110 atctttgtttgattggtgtgattttgtccgaattaacaacagatatatatgaaagacttcatatggtgttgtgatagaag 27149189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 292 - 424
Target Start/End: Original strand, 27149432 - 27149569
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactga-----atatcacttt 386  Q
    |||||||||| || |||| |||||||||| ||||||||||| ||||||| ||||| ||||| ||||| ||||||||||||| |||     || | | ||     
T  27149432 tttgaatatgtttatggtattgctttacacatagatttagaactattttgttgttattgttacttgaggctactttactcattgattaccatttaaattc 27149531  T
Q  387 ctttgctccacacatctttgtttgattggtgtgatttt 424  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  27149532 ctttgctacacacatctttgtttcattggtgtgatttt 27149569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 292 - 440
Target Start/End: Original strand, 10445582 - 10445732
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttc-ttt 390  Q
    ||||| |||||||||||| ||||| ||||  ||||||||| ||| |||| ||||||||||||||||  |  ||||||  || ||| || ||||| | |||    
T  10445582 tttgattatgcttgtggttttgctctacacttagatttaggtctgtttt-ttgttgttgttgcttggagacactttatccattgattaccacttcctttt 10445680  T
Q  391 gctccacacatctttg--tttgattggtgtgattttgtccgaattaacaaca 440  Q
    ||||||||||||||||  ||| ||||||||||||||||||||||| ||||||    
T  10445681 gctccacacatctttgtttttcattggtgtgattttgtccgaattcacaaca 10445732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 292 - 440
Target Start/End: Complemental strand, 35397470 - 35397325
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||| ||||| | || |||||||||| | ||||||   ||||||||||||||| |  | || ||||| ||| ||  |||| || ||    
T  35397470 tttgattatgcttgtggttttgctctgcacatagatttaggtatatttt---gttgttgttgcttgaggtcatttcactcattgattactacttcctctg 35397374  T
Q  392 ctccacacatctttgtttgattggtgtgattttgtccgaattaacaaca 440  Q
    |||| ||||||||||||| ||||||||| ||||||||||||| ||||||    
T  35397373 ctccgcacatctttgtttcattggtgtgtttttgtccgaattcacaaca 35397325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 292 - 440
Target Start/End: Complemental strand, 8040019 - 8039870
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttc-ttt 390  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||| |  ||||||   | ||| || ||||| | |||    
T  8040019 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttgaagacactttatctattgattaccacttcctttt 8039922  T
Q  391 gctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 440  Q
    |||||||||||||||||  || |||||||||||||||| |||||| ||||||    
T  8039921 gctccacacatctttgttattcattggtgtgattttgtacgaattcacaaca 8039870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 292 - 441
Target Start/End: Original strand, 33528759 - 33528908
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| ||| ||||  |||||||||||||||  |  ||||||  || ||| || ||||| |||||    
T  33528759 tttgattatgcttgtggtgttgctctacatttagatctaggtctgtttt--tgttgttgttgcttggggacactttatccattgattaccacttcctttg 33528856  T
Q  392 ctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaacag 441  Q
    ||||||||||||||||  || |||||||  |||||||||||||| |||||||    
T  33528857 ctccacacatctttgttattcattggtggaattttgtccgaattcacaacag 33528908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 401
Target Start/End: Original strand, 2869832 - 2869943
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctatt--ttattgttgttgttgcttgatgctactttactcactgaatatcactttctt 389  Q
    ||||||||||||| |||||||||| ||||  ||||||||| ||||||  || |||||||||||| |||||||||||||||||| |||  |  |||| |||    
T  2869832 tttgaatatgcttatggtgttgctctacacttagatttaggtctatttgttgttgttgttgttgtttgatgctactttactcattgatcactacttcctt 2869931  T
Q  390 tgctccacacat 401  Q
    ||||||| ||||    
T  2869932 tgctccaaacat 2869943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 292 - 424
Target Start/End: Original strand, 23078609 - 23078742
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| | | |||| ||||||||||||||||  |  ||||||| || ||| || ||||| |||||    
T  23078609 tttgattatgcttgtggtgttgctctacacttagatctaggtatgtttt-ttgttgttgttgcttggagacactttacacattgattaccacttcctttg 23078707  T
Q  392 ctccacacatctttg--tttgattggtgtgatttt 424  Q
    |||||||||||||||  ||| ||||||||||||||    
T  23078708 ctccacacatctttgtttttcattggtgtgatttt 23078742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 441
Target Start/End: Complemental strand, 20522179 - 20522030
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  ||||| ||  ||| ||||  ||||||| |||||||  |  ||||||  || ||| || ||||| ||||     
T  20522179 tttgattatgcttgtggtgttgctctacacttagatctatgtctttttt--tgttgtttttgcttggagacactttatccattgattaccacttcctttt 20522082  T
Q  392 ctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaacag 441  Q
    |||||||||||||||||  | ||||||||||||||||||||||| |||||||    
T  20522081 ctccacacatctttgttattcattggtgtgattttgtccgaattcacaacag 20522030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 440
Target Start/End: Original strand, 34682472 - 34682621
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttc-ttt 390  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||  |  ||||||   | ||| || ||||||| |||    
T  34682472 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttggagacactttatctattgattaccactttctttt 34682569  T
Q  391 gctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 440  Q
    |||||||||||||||||  || ||||||||| |||||| |||||| ||||||    
T  34682570 gctccacacatctttgttattcattggtgtggttttgtacgaattcacaaca 34682621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 381 - 440
Target Start/End: Complemental strand, 21629822 - 21629762
Alignment:
Q  381 cactttctttgctccacacatctttgtttg-attggtgtgattttgtccgaattaacaaca 440  Q
    ||||| |||||||||||||||||||||||  ||||||||||||||||||||||| ||||||    
T  21629822 cacttcctttgctccacacatctttgttttcattggtgtgattttgtccgaattcacaaca 21629762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 408
Target Start/End: Complemental strand, 31056001 - 31055887
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||  |  ||||||   | ||| || ||||| |||||    
T  31056001 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttggagacactttatctattgattaccacttcctttg 31055904  T
Q  392 ctccacacatctttgtt 408  Q
    |||||||||||||||||    
T  31055903 ctccacacatctttgtt 31055887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 408
Target Start/End: Original strand, 10707389 - 10707505
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| ||||||||  |||||||| ||||  ||||| ||| | |||||| ||||||||||||||||  |  ||||||| || ||| || |||||  ||||    
T  10707389 tttgattatgcttgcagtgttgctctacacttagatctaggtatattttcttgttgttgttgcttggagacactttacacattgattaccacttcttttg 10707488  T
Q  392 ctccacacatctttgtt 408  Q
    |||||||||||||||||    
T  10707489 ctccacacatctttgtt 10707505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 424
Target Start/End: Complemental strand, 34388810 - 34388686
Alignment:
Q  300 tgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacac 399  Q
    |||||||||||||||| ||||  ||||| ||| ||| ||||  |||||||||||||||| |  |||||||  | ||| || ||||| |||||||||||||    
T  34388810 tgcttgtggtgttgctctacacttagatctaggtctgtttt--tgttgttgttgcttgaagacactttacatattgattaccacttcctttgctccacac 34388713  T
Q  400 atctttgt--ttgattggtgtgatttt 424  Q
    ||||| ||  || ||||||||||||||    
T  34388712 atcttcgttatttattggtgtgatttt 34388686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 433
Target Start/End: Complemental strand, 40014799 - 40014746
Alignment:
Q  382 actttctttgctccacacatctttgtttg--attggtgtgattttgtccgaatt 433  Q
    |||| |||||||||| |||||||||||||  |||||||||||||||||||||||    
T  40014799 acttcctttgctccatacatctttgtttgtcattggtgtgattttgtccgaatt 40014746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 440
Target Start/End: Original strand, 16940416 - 16940496
Alignment:
Q  363 actttactcactgaatatcactttctttgctccacacatctttgt--ttgattggtgtgattttgt-ccgaattaacaaca 440  Q
    |||||| ||| ||| || ||||| |||||||||||||||||||||  || |||||||||||||||| ||||||| ||||||    
T  16940416 actttattcattgattaccacttcctttgctccacacatctttgttattcattggtgtgattttgtaccgaattcacaaca 16940496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 440
Target Start/End: Original strand, 17011081 - 17011161
Alignment:
Q  363 actttactcactgaatatcactttctttgctccacacatctttgt--ttgattggtgtgattttgt-ccgaattaacaaca 440  Q
    |||||| ||| ||| || ||||| |||||||||||||||||||||  || |||||||||||||||| ||||||| ||||||    
T  17011081 actttattcattgattaccacttcctttgctccacacatctttgttattcattggtgtgattttgtaccgaattcacaaca 17011161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 292 - 409
Target Start/End: Original strand, 28259315 - 28259430
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    |||| ||||||||||||||||||| ||||  |||| | || ||| |||| ||||| ||||||||||  |  ||||||| || ||| ||| |||| |||||    
T  28259315 tttgtatatgcttgtggtgttgctctacac-tagact-aggtctgtttttttgttattgttgcttggagacactttacacattgattattacttcctttg 28259412  T
Q  392 ctccacacatctttgttt 409  Q
    ||||||||||||||||||    
T  28259413 ctccacacatctttgttt 28259430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 424
Target Start/End: Original strand, 36757947 - 36758031
Alignment:
Q  342 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttgt--ttgattggtgtgatttt 424  Q
    ||||||||||||||||  |  ||||||| || ||| || ||||| |||||||||||||||||||||  || ||||||||||||||    
T  36757947 ttgttgttgttgcttggagacactttacacattgattaccacttcctttgctccacacatctttgttattcattggtgtgatttt 36758031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 424
Target Start/End: Original strand, 42039855 - 42039939
Alignment:
Q  342 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttgt--ttgattggtgtgatttt 424  Q
    ||||||||||||||||  |  ||||||| || ||| || ||||| |||||||||||||||||||||  || ||||||||||||||    
T  42039855 ttgttgttgttgcttggagacactttacacattgattaccacttcctttgctccacacatctttgttattcattggtgtgatttt 42039939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 440
Target Start/End: Complemental strand, 17865162 - 17865014
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| | | ||||  ||||||||||| |||  |  | ||||  || ||| || ||||| ||||     
T  17865162 tttgattatgcttgtggtgttgctctacacttagatctaggtatgtttt--tgttgttgttggttggagacattttatccattgattaccacttcctttt 17865065  T
Q  392 ctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 440  Q
    |||||||||| ||||||  | ||||||||||||||||||||||| ||||||    
T  17865064 ctccacacatttttgttattcattggtgtgattttgtccgaattcacaaca 17865014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 431
Target Start/End: Original strand, 15904031 - 15904174
Alignment:
Q  298 tatgcttgtggtgttgctttacaaatagatttagatctatt---ttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg--- 391  Q
    ||||||||||||| || |||||| |||| |||||| || ||   || ||||||||||||||||| | |||||| |||| ||| || ||||  |||||       
T  15904031 tatgcttgtggtgatgttttacacatagttttagaactgtttcgttgttgttgttgttgcttgaggatactttgctcattgattaccactccctttgctc 15904130  T
Q  392 ---ctccacacatcttt-gtttgattggtgtgattttgtccgaa 431  Q
       ||||||||||||||  ||| |||||||||||||||||||||    
T  15904131 cacctccacacatctttattttcattggtgtgattttgtccgaa 15904174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 402
Target Start/End: Original strand, 14699132 - 14699244
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatct--attttattgttgttgttgcttgatgctactttactcactgaatatcactttctt 389  Q
    ||||| |||||||||||||||||| ||||  ||||||||| |||   |||| ||||||||||||||||  |  ||||||   | ||| || ||||| |||    
T  14699132 tttgattatgcttgtggtgttgctctacacttagatttaggtctgctttttgttgttgttgttgcttggagacactttatctattgattaccacttcctt 14699231  T
Q  390 tgctccacacatc 402  Q
    |||||||||||||    
T  14699232 tgctccacacatc 14699244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 403
Target Start/End: Complemental strand, 16388358 - 16388297
Alignment:
Q  342 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatct 403  Q
    ||||||||| |||||||  |||||||| ||| ||| ||  ||||||||||||||||||||||    
T  16388358 ttgttgttgctgcttgagactactttattcattgattactactttctttgctccacacatct 16388297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 408
Target Start/End: Complemental strand, 33118095 - 33117981
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||| || |||| |  ||||||   | ||| || ||||| |||||    
T  33118095 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgatgtttgaagacactttatctattgattaccacttcctttg 33117998  T
Q  392 ctccacacatctttgtt 408  Q
     ||||||||||||||||    
T  33117997 atccacacatctttgtt 33117981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 5e-48; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 15486207 - 15486374
Alignment:
Q  1 gtaatagtttcaaagagtgtggaaacggag---aagagaattatcagctctggagggtaaagatgatgaatcaaccaccgtagaagggtgtgaaacggca 97  Q
    |||| |||| ||||||||||||||||||||   |||||||  ||||||||||||||||| |||||||||||||  |||||||||||||||||||| |||     
T  15486207 gtaacagttccaaagagtgtggaaacggaggagaagagaagaatcagctctggagggtagagatgatgaatcagtcaccgtagaagggtgtgaaatggcc 15486306  T
Q  98 atgaaaactaaaggaaagaggtgattggagcaacgtcggagcttggccggagaaagattaggttgccg 165  Q
     |||||||| |||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||    
T  15486307 gtgaaaactgaaggaaagaggtgatcagagcaacgccggagcttggccggagaaagattaggttgccg 15486374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 292 - 440
Target Start/End: Complemental strand, 3047215 - 3047063
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctatttt---attgttgttgttgcttgatgctactttactcactgaatatcactttct 388  Q
    ||||| ||||||||||||||||||||||| | || |||||| |||||||   |||||||||||||||||| |  |||||||||| ||| |||||||||||    
T  3047215 tttgattatgcttgtggtgttgctttacacacagttttagaactattttgttattgttgttgttgcttgaggacactttactcattgattatcactttct 3047116  T
Q  389 ttgctccacacatctttg-tttgattggtgtgattttgtccgaattaacaaca 440  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||| ||||||    
T  3047115 ttgctccacacatctttgttttcattggtgtgattttgtccgaattcacaaca 3047063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 292 - 441
Target Start/End: Original strand, 28617363 - 28617513
Alignment:
Q  292 tttgaatatgcttgtggtgttgcttt-acaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttcttt 390  Q
    |||||||||||||||||||||||||| ||    ||| |||| |||||||| ||||| ||||| ||||| ||||||||||||| ||| || ||||| ||||    
T  28617363 tttgaatatgcttgtggtgttgcttttactctaagacttaggtctattttgttgttcttgtttcttgaggctactttactcattgattaccacttccttt 28617462  T
Q  391 gctccacacatctttgtttgattggtgtgattttgtccgaattaacaacag 441  Q
    |||||||||||||||||||||||  |||||||||||||||||| |||||||    
T  28617463 gctccacacatctttgtttgattaatgtgattttgtccgaattcacaacag 28617513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 292 - 441
Target Start/End: Original strand, 9235693 - 9235844
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||| ||||||||||||||||  |  ||||||  || ||| || ||||| |||||    
T  9235693 tttgattatgcttgtggtgttgctctacatttagatttaggtctgtttttttgttgttgttgcttggagacactttatccattgattaccacttcctttg 9235792  T
Q  392 ctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaacag 441  Q
    ||||||||||||||||  || ||||||||||||||||||||||| |||||||    
T  9235793 ctccacacatctttgttatttattggtgtgattttgtccgaattcacaacag 9235844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 433
Target Start/End: Original strand, 4796805 - 4796949
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttatt-gttgttgttgcttgatgctactttactcactgaatatcactttcttt 390  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||| || ||||||||||||||  |  ||||||   | ||| || ||||| ||||    
T  4796805 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttttttttgttgttgttgcttggagaaactttatctattgattaccacttccttt 4796904  T
Q  391 gctccacacatctttgt--ttgattggtgtgattttgtccgaatt 433  Q
    |||||||||||||||||  || |||||||||||||||||||||||    
T  4796905 gctccacacatctttgttattcattggtgtgattttgtccgaatt 4796949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 292 - 440
Target Start/End: Complemental strand, 20284048 - 20283900
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||| ||||  |  ||||||  || ||| ||||||||  ||||    
T  20284048 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgtttcttggagacactttatccattgattatcacttcttttg 20283951  T
Q  392 ctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 440  Q
    ||||||||||||||||  || || |||||||||||||||||||| ||||||    
T  20283950 ctccacacatctttgttattcataggtgtgattttgtccgaattcacaaca 20283900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 292 - 440
Target Start/End: Original strand, 23403151 - 23403299
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  || |||||| ||| ||||  |||||||||||||||     ||||||  || ||| |||||||| |||||    
T  23403151 tttgattatgcttgtggtgttgctctacacttacatttaggtctgtttt--tgttgttgttgcttggaaacactttatccattgattatcacttcctttg 23403248  T
Q  392 ctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 440  Q
    ||||||||||||||||  || |||||| |||||||||||||||| ||||||    
T  23403249 ctccacacatctttgttattcattggtatgattttgtccgaattcacaaca 23403299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 292 - 441
Target Start/End: Original strand, 46516448 - 46516598
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| ||||||| |||||||||||||||  ||||||||  ||| |||| |||||||||||| |||  |  ||||||   | ||| || ||||| |||||    
T  46516448 tttgattatgcttttggtgttgctttacacttagatttaagtctgtttt-ttgttgttgttgtttggagacactttatctattgattaccacttcctttg 46516546  T
Q  392 ctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaacag 441  Q
    |||||||||||||||||  | ||||||||||||||||||||||| |||||||    
T  46516547 ctccacacatctttgttattcattggtgtgattttgtccgaattcacaacag 46516598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 440
Target Start/End: Complemental strand, 2580299 - 2580199
Alignment:
Q  342 ttgttgttgttgcttgatgctactttactcactgaatatcactttcttt-gctccacacatctttgtttg-attggtgtgattttgtccgaattaacaac 439  Q
    ||||||||||||||||| |  ||||||| || ||| || ||||| |||| |||||||||||||||||||  ||||||||||||||||||||||| |||||    
T  2580299 ttgttgttgttgcttgaagacactttacacattgattaccacttccttttgctccacacatctttgtttacattggtgtgattttgtccgaattcacaac 2580200  T
Q  440 a 440  Q
    |    
T  2580199 a 2580199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 342 - 440
Target Start/End: Original strand, 5817461 - 5817559
Alignment:
Q  342 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttgtttgattggtgtgattttgtccgaattaacaaca 440  Q
    |||||||||||| |||||||||||||   || ||| ||  |||| ||||||| ||||||||||||||| |||| ||||||||||| |||||| ||||||    
T  5817461 ttgttgttgttgtttgatgctactttgtccattgattaatacttactttgcttcacacatctttgttttattgatgtgattttgtacgaattcacaaca 5817559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 292 - 441
Target Start/End: Complemental strand, 29159762 - 29159612
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttc-ttt 390  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| ||||  |||||||||||||||  |  ||||||   | ||| || ||||| | |||    
T  29159762 tttgattatgcttgtggtgttgctctacacttagatttaggtctgtttt--tgttgttgttgcttggagacactttatctattgattaccacttcccttt 29159665  T
Q  391 gctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaacag 441  Q
    ||||||||||||||||||  | |||||||||||||||| |||||| |||||||    
T  29159664 gctccacacatctttgttattcattggtgtgattttgtacgaattcacaacag 29159612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 298 - 444
Target Start/End: Original strand, 9190152 - 9190298
Alignment:
Q  298 tatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttc-tttgctcca 396  Q
    |||||||||||||||||| ||||  ||||| ||| |   || | ||||||||||||||||  |  ||||||| || ||| || ||||| | |||||||||    
T  9190152 tatgcttgtggtgttgctctacacttagatctaggt---ttgttttgttgttgttgcttggagacactttacacattgattaccacttccttttgctcca 9190248  T
Q  397 cacatctttg--tttgattggtgtgattttgtccgaattaacaacagata 444  Q
    ||||||||||  ||| ||||||||||||||| ||||||| ||||||||||    
T  9190249 cacatctttgtttttcattggtgtgattttgaccgaattcacaacagata 9190298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 440
Target Start/End: Complemental strand, 49091621 - 49091472
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  || || ||| ||| ||||  |||||||||||||||  |  ||||||   | ||| || ||||| |||||    
T  49091621 tttgattatgcttgtggtgttgctctacacttaaatctaggtctgtttt--tgttgttgttgcttggagacactttatctattgattaccacttcctttg 49091524  T
Q  392 ctccacacatctttgt--ttgattggtgtgattttgt-ccgaattaacaaca 440  Q
    ||||||||||||||||  || |||||||||||||||| ||||||| ||||||    
T  49091523 ctccacacatctttgttattcattggtgtgattttgtaccgaattcacaaca 49091472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 440
Target Start/End: Original strand, 9185307 - 9185449
Alignment:
Q  298 tatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttcttt-gctcca 396  Q
    ||||||||||||||| || ||||  ||||| ||| ||| ||||   ||||||||||||||  |  ||||||| || ||| || ||||| |||| ||||||    
T  9185307 tatgcttgtggtgtttctctacacttagatctaggtctgtttt---gttgttgttgcttggagacactttacacattgattaccacttccttttgctcca 9185403  T
Q  397 cacatctttg--tttgattggtgtgattttgtccgaattaacaaca 440  Q
    ||||||||||  ||| ||| ||||||||||| ||||||| ||||||    
T  9185404 cacatctttgtttttcattagtgtgattttgaccgaattcacaaca 9185449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 424
Target Start/End: Complemental strand, 21988817 - 21988733
Alignment:
Q  342 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatc--tttgtttgattggtgtgatttt 424  Q
    |||||||||||||||| ||  ||||||| || ||| || ||||| ||||||||||||||||  | | ||| ||||||||||||||    
T  21988817 ttgttgttgttgcttggtgacactttacacattgattaccacttcctttgctccacacatcattatttttcattggtgtgatttt 21988733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 440
Target Start/End: Original strand, 2647962 - 2648013
Alignment:
Q  391 gctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 440  Q
    ||||||||||||||||||  | ||||||||||||||||| ||||| ||||||    
T  2647962 gctccacacatctttgttattcattggtgtgattttgtctgaattcacaaca 2648013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 438
Target Start/End: Original strand, 33332675 - 33332734
Alignment:
Q  381 cactttctttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaa 438  Q
    ||||| ||||| |||||||||||| |||  | ||||||||||||||||||||||| ||||    
T  33332675 cacttcctttggtccacacatcttggttattcattggtgtgattttgtccgaattcacaa 33332734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 6e-26; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 291 - 440
Target Start/End: Original strand, 5990698 - 5990843
Alignment:
Q  291 ttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttcttt 390  Q
    ||||||||||||||||||| ||| | ||||  ||||||||| |||||||    |||||||||||||||||||||||||  || ||| ||  |||| ||||    
T  5990698 ttttgaatatgcttgtggttttgttctacacttagatttaggtctattt----gttgttgttgcttgatgctactttatccattgattactacttccttt 5990793  T
Q  391 gctccacacatctttgtttgattggtgtgattttgtccgaattaacaaca 440  Q
    ||||| ||||||||||||| |||| |||||||||||| ||||| ||||||    
T  5990794 gctccgcacatctttgttttattgatgtgattttgtcggaattcacaaca 5990843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 303 - 440
Target Start/End: Original strand, 7493210 - 7493352
Alignment:
Q  303 ttgtggtgttgctttacaaatagatttagatctattt-----tattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccac 397  Q
    ||||||||||||| ||||  |||||||||||||||||     | |||||| || |||||||  ||||||||| || ||| ||  |||| |||||||||||    
T  7493210 ttgtggtgttgctctacacttagatttagatctatttgttgttgttgttgctgctgcttgagactactttacacattgattactacttcctttgctccac 7493309  T
Q  398 acatctttgtttgattggtgtgattttgtccgaattaacaaca 440  Q
    ||||| | |||| ||||||||||||||||||||||| ||||||    
T  7493310 acatcatagttttattggtgtgattttgtccgaattcacaaca 7493352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 292 - 440
Target Start/End: Original strand, 9765958 - 9766106
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  ||||||||| | | ||||  |||||||||||||||  |  ||||||   | ||| |||||||| |||||    
T  9765958 tttgattatgcttgtggtgttgctctacacttagatttaggtttgtttt--tgttgttgttgcttggagacactttatctattgattatcacttcctttg 9766055  T
Q  392 ctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 440  Q
    ||||||||||||||||  || ||||||||||||||||| ||||| ||||||    
T  9766056 ctccacacatctttgttattcattggtgtgattttgtctgaattcacaaca 9766106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 440
Target Start/End: Complemental strand, 6127179 - 6127029
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttcttt- 390  Q
    ||||| |||||||||||||||||| ||||  || ||||| |||| |||| ||||||||||||||||  |  |||| |   | ||| || ||||| ||||     
T  6127179 tttgattatgcttgtggtgttgctctacacttaaatttatatctgtttt-ttgttgttgttgcttggagacacttaatctattgattaccacttcctttt 6127081  T
Q  391 gctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 440  Q
    ||||||||||||||||||  | |||||||||||||||| |||||| ||||||    
T  6127080 gctccacacatctttgttattcattggtgtgattttgtacgaattcacaaca 6127029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 428
Target Start/End: Original strand, 5702627 - 5702757
Alignment:
Q  298 tatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccac 397  Q
    ||||||||||||| |||| ||||  ||||| ||| ||| ||||  ||||||||||||| |  |  |||||| ||| ||| || |||||  ||||||||||    
T  5702627 tatgcttgtggtgatgctctacacttagatctaggtctgtttt--tgttgttgttgctaggagacactttattcattgattaccacttcatttgctccac 5702724  T
Q  398 acatctttgt--ttgattggtgtgattttgtcc 428  Q
    ||||||||||  || ||||||||||||||||||    
T  5702725 acatctttgttattcattggtgtgattttgtcc 5702757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 440
Target Start/End: Complemental strand, 6813543 - 6813489
Alignment:
Q  387 ctttgctccacacatctttgtttg-attggtgtgattttgtccgaattaacaaca 440  Q
    |||||||| ||||||||||||||  ||||||||||||||||||||||| ||||||    
T  6813543 ctttgctcaacacatctttgttttcattggtgtgattttgtccgaattcacaaca 6813489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 440
Target Start/End: Complemental strand, 28307421 - 28307368
Alignment:
Q  388 tttgctccacacatctttgtttg-attggtgtgattttgtccgaattaacaaca 440  Q
    ||||||||||||||||||||||  |||||||||||||| |||||||| ||||||    
T  28307421 tttgctccacacatctttgttttcattggtgtgattttatccgaattcacaaca 28307368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 440
Target Start/End: Original strand, 23799803 - 23799863
Alignment:
Q  381 cactttctttgctccacacatctttgtttg-attggtgtgattttgtccgaattaacaaca 440  Q
    ||||||||||||||||||||| ||| |||  |||||||||||||||| |||||| ||||||    
T  23799803 cactttctttgctccacacatattttttttcattggtgtgattttgtacgaattcacaaca 23799863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 438
Target Start/End: Original strand, 26403368 - 26403515
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttcttt- 390  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| ||||  ||||||| |||||||  |  || |||   | ||| || ||||| ||||     
T  26403368 tttgattatgcttgtggtgttgctctacacttagatttaggtctgtttt--tgttgttattgcttggagacacattatctattgattaccacttcctttt 26403465  T
Q  391 gctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaa 438  Q
    |||||||||||||||||  || ||||||||| ||||||||||||| ||||    
T  26403466 gctccacacatctttgttattcattggtgtggttttgtccgaattcacaa 26403515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 447
Target Start/End: Complemental strand, 26287767 - 26287706
Alignment:
Q  388 tttgctccacacatctttgttt-gattggtgtga-ttttgtccgaattaacaacagatatat 447  Q
    ||||||||||||||||||||||  |||||||||| |||| |||||||| |||||| ||||||    
T  26287767 tttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaacaaatatat 26287706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 447
Target Start/End: Complemental strand, 26313018 - 26312957
Alignment:
Q  388 tttgctccacacatctttgttt-gattggtgtga-ttttgtccgaattaacaacagatatat 447  Q
    ||||||||||||||||||||||  |||||||||| |||| |||||||| |||||| ||||||    
T  26313018 tttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaacaaatatat 26312957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 289 - 440
Target Start/End: Original strand, 42127545 - 42127695
Alignment:
Q  289 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttct 388  Q
    |||||||| |||||||||||||||||| ||||| ||||||||  ||| ||||   ||||||||||||||  |  ||||||  || ||| || ||||||||    
T  42127545 tgttttgattatgcttgtggtgttgctctacaattagatttaagtctgtttt---gttgttgttgcttggagacactttatccattgattaccactttct 42127641  T
Q  389 ttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 440  Q
    |||||||||||||||||||  || ||| ||||||||||||||||||| ||||||    
T  42127642 ttgctccacacatctttgttattcattagtgtgattttgtccgaattcacaaca 42127695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 441
Target Start/End: Complemental strand, 19588705 - 19588556
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| ||||  |||||||||||||||  |   |||||   | ||| || ||||| |||||    
T  19588705 tttgattatgcttgtggtgttgctctacacttagatttaggtctttttt--tgttgttgttgcttggagacgctttatctattgattaccacttcctttg 19588608  T
Q  392 ctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaacag 441  Q
    |||||||||||||||||  | ||||||||||||||||||||||| |||||||    
T  19588607 ctccacacatctttgttattcattggtgtgattttgtccgaattcacaacag 19588556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 440
Target Start/End: Complemental strand, 28832218 - 28832071
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  |||||| || ||| ||||  |||||||||||||||| |  ||||||  || ||| || ||||| |||||    
T  28832218 tttgattatgcttgtggtgttgctctacacttagatt-aggtctgtttt--tgttgttgttgcttgaagacactttatccattgattaccacttcctttg 28832122  T
Q  392 ctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 440  Q
    ||||||||||||||||  || |||||| ||||||||||||| || ||||||    
T  28832121 ctccacacatctttgttattcattggtatgattttgtccgatttcacaaca 28832071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 292 - 440
Target Start/End: Original strand, 11181970 - 11182120
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||| ||||| ||||  ||||||||  ||| |||| ||||||||||||||||  |  ||||||   | ||| || ||||| |||||    
T  11181970 tttgattatgcttgtggtattgctctacacttagatttaagtctgtttttttgttgttgttgcttggagacactttatctattgattaccacttactttg 11182069  T
Q  392 ctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 440  Q
    ||||||||||||||||  || |||||||||||||||| | |||| ||||||    
T  11182070 ctccacacatctttgttattcattggtgtgattttgttcaaattcacaaca 11182120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 424
Target Start/End: Complemental strand, 14520182 - 14520056
Alignment:
Q  298 tatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccac 397  Q
    |||||||||||||||||| ||||  ||||| ||| ||| ||||  |||||||||||||||  |  ||||||| || ||| || ||||| |||||||||||    
T  14520182 tatgcttgtggtgttgctctacacttagatctaggtctgtttt--tgttgttgttgcttggagacactttacacattgattaccacttcctttgctccac 14520085  T
Q  398 acatctttgt--ttgattggtgtgatttt 424  Q
    ||||||||||  || ||||||||||||||    
T  14520084 acatctttgttattcattggtgtgatttt 14520056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 441
Target Start/End: Complemental strand, 3880259 - 3880112
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttcttt- 390  Q
    ||||| |||||||||||||||||||||||  ||||||||| ||| ||||     |||||||| |||| |  ||||||   | ||| || ||||| ||||     
T  3880259 tttgattatgcttgtggtgttgctttacacttagatttaggtctgtttt-----tgttgttgattgaagacactttatctattgattaccacttcctttt 3880165  T
Q  391 gctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaacag 441  Q
    ||||||||||||||||||  | |||||||||||||||| |||||| |||||||    
T  3880164 gctccacacatctttgttattcattggtgtgattttgtacgaattcacaacag 3880112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 440
Target Start/End: Complemental strand, 10281732 - 10281673
Alignment:
Q  383 ctttctttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 440  Q
    |||||||||||||||||||||||||  || |||||||||||||||||| |||| ||||||    
T  10281732 ctttctttgctccacacatctttgttattcattggtgtgattttgtccaaattcacaaca 10281673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 292 - 438
Target Start/End: Original strand, 17004098 - 17004244
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttcttt- 390  Q
    ||||| ||||||||||||||||||| |||  ||||||||| ||| ||||  |||||||||||||||  |  ||||||   | ||| || ||||| ||||     
T  17004098 tttgattatgcttgtggtgttgctt-acacttagatttaggtctgtttt--tgttgttgttgcttggagacactttatctattgattaccacttcctttt 17004194  T
Q  391 gctccacacatctttgtttg--attggtgtgattttgtccgaattaacaa 438  Q
    ||||||||| |||||||||   ||||||||||||||||||||||| ||||    
T  17004195 gctccacacctctttgtttttcattggtgtgattttgtccgaattcacaa 17004244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 297 - 424
Target Start/End: Complemental strand, 34842558 - 34842434
Alignment:
Q  297 atatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctcca 396  Q
    |||||||||||||||||||| |||  ||||| ||| | | ||| |||||||||| ||||||| ||||||||||||  ||| ||  |||| |||| |||||    
T  34842558 atatgcttgtggtgttgcttcacacttagatctaggtttgttt-attgttgttgctgcttgaggctactttactc-ttgattactacttcctttactcca 34842461  T
Q  397 cacatctttgtttgattggtgtgatttt 424  Q
    |||||||  |||| ||||||||||||||    
T  34842460 cacatctaagttt-attggtgtgatttt 34842434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 440
Target Start/End: Original strand, 42126632 - 42126693
Alignment:
Q  381 cactttctttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 440  Q
    ||||| |||||||||||||||||||||  || |||||||||||||| |||||||| ||||||    
T  42126632 cacttcctttgctccacacatctttgttattcattggtgtgattttatccgaattcacaaca 42126693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 328 - 451
Target Start/End: Complemental strand, 6741779 - 6741654
Alignment:
Q  328 ttagatctattttattgttgttgttgcttgatgctacttt-actcactgaatatcactttctttgctccacacatctttg-tttgattggtgtgattttg 425  Q
    |||| ||||||||  |||||| |||| |||| |||||||| ||||| ||  ||  | ||||||||||||||||||||||| ||| |||| ||| ||||||    
T  6741779 ttaggtctattttgctgttgtagttgtttgaggctacttttactcattgtttactattttctttgctccacacatctttgttttcattgatgttattttg 6741680  T
Q  426 tccgaattaacaacagatatatatga 451  Q
    || ||||| |||||||| | ||||||    
T  6741679 tctgaattcacaacagagacatatga 6741654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 440
Target Start/End: Complemental strand, 28537530 - 28537430
Alignment:
Q  342 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaac 439  Q
    |||||||||||||||||  |||||||||||| ||| ||  || || ||||||||| ||||||||||  || |||||| |||||||| || |||| |||||    
T  28537530 ttgttgttgttgcttgagactactttactcattgattactaccttttttgctccatacatctttgtaattcattggtatgattttgaccaaattcacaac 28537431  T
Q  440 a 440  Q
    |    
T  28537430 a 28537430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 387 - 440
Target Start/End: Original strand, 33031178 - 33031231
Alignment:
Q  387 ctttgctccacacatctttgtttgattggtgtgattttgtccgaattaacaaca 440  Q
    ||||||||||||||||||| ||| ||||||||| |||||||| |||| ||||||    
T  33031178 ctttgctccacacatctttattttattggtgtgtttttgtccaaattcacaaca 33031231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 440
Target Start/End: Original strand, 36932582 - 36932635
Alignment:
Q  388 tttgctccacacatctttgttt-gattggtgtgattttgtccgaattaacaaca 440  Q
    ||||||||||||||||||||||  |||||||||| |||||||||||| ||||||    
T  36932582 tttgctccacacatctttgtttacattggtgtgagtttgtccgaattcacaaca 36932635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 440
Target Start/End: Complemental strand, 15464444 - 15464343
Alignment:
Q  342 ttgttgttgttgcttgatgctactttactcactgaatatcactttcttt-gctccacacatctttgttt-gattggtgtga-ttttgtccgaattaacaa 438  Q
    ||||||||||||||||  |  ||||||| || ||| || ||||| |||| |||||||||||||||||||  |||||||||| |||| |||||||| ||||    
T  15464444 ttgttgttgttgcttggagacactttacacattgattaccacttccttttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaa 15464345  T
Q  439 ca 440  Q
    ||    
T  15464344 ca 15464343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 292 - 440
Target Start/End: Original strand, 25862160 - 25862308
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| ||||  |||||||||||||||  |  ||||||   | ||| || ||||| |||||    
T  25862160 tttgattatgcttgtggtgttgctctacacttagatttaggtctgtttt--tgttgttgttgcttggagacactttatctattgattaccacttcctttg 25862257  T
Q  392 ctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 440  Q
    |||||||||||||||||  | ||||||||||||||||||||||| ||||||    
T  25862258 ctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 25862308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 299 - 440
Target Start/End: Complemental strand, 5112194 - 5112052
Alignment:
Q  299 atgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccaca 398  Q
    |||| ||||||||||||||||| | || |||| | || |||| |||||||||||||||||  ||  |||||||| ||| || ||||  ||||||||||||    
T  5112194 atgcctgtggtgttgctttacacaaagttttaaaactgttttgttgttgttgttgcttgagacttgtttactcattgattaccactccctttgctccaca 5112095  T
Q  399 catctttg-tttgattggtgtgattttgtccgaattaacaaca 440  Q
    ||| |||| ||| |||||||||||||| |||||||| ||||||    
T  5112094 catttttgttttcattggtgtgattttatccgaattcacaaca 5112052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 289 - 433
Target Start/End: Original strand, 1983433 - 1983577
Alignment:
Q  289 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttct 388  Q
    |||||||| |||| |||||||| |||||||||  ||||||||  || | ||| |||||||||||||||||  | ||||||  || ||| ||| |||| ||    
T  1983433 tgttttgattatgtttgtggtgatgctttacacttagatttaagtc-agtttgttgttgttgttgcttgaacccactttatccattgattattacttcct 1983531  T
Q  389 ttgctccacacatctttg-tttgattggtgtgattttgtccgaatt 433  Q
    |||||||||||||||||| ||| ||| |||||||||||||||||||    
T  1983532 ttgctccacacatctttgttttcatttgtgtgattttgtccgaatt 1983577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 442
Target Start/End: Complemental strand, 54867143 - 54866991
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  ||||| ||  ||| |||| ||||||||||||||||  |  ||||||   | ||| || ||||| |||||    
T  54867143 tttgattatgcttgtggtgttgctctacacttagatctatgtctgtttttttgttgttgttgcttggagacactttatctattgattaccacttcctttg 54867044  T
Q  392 ctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaacaga 442  Q
    |||||||||||||||||  | ||||||||||||||||| ||||| ||||||||    
T  54867043 ctccacacatctttgttattcattggtgtgattttgtctgaattcacaacaga 54866991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 447
Target Start/End: Original strand, 5269329 - 5269488
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctatttta-ttgttgttgttgcttgatgctactttactcactgaatatcactttcttt 390  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| | ||||||  ||||||||||||||||  |  ||||||  || ||| || ||||| ||||    
T  5269329 tttgattatgcttgtggtgttgctctacacttagatctaggtatatttttgttgttgttgttgcttggagacactttatccattgattaccacttccttt 5269428  T
Q  391 gctccacacatctttgt--ttgattggtgtga-ttttgtccgaattaacaacagatatat 447  Q
    |||||||||||||||||  || ||| |||| | ||||||||||||| |||||||||||||    
T  5269429 gctccacacatctttgttatttattagtgtaatttttgtccgaattcacaacagatatat 5269488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 440
Target Start/End: Complemental strand, 10047338 - 10047190
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  ||||| ||  ||||||||  ||||||| |||||||  |  ||||||  || ||| || ||||| |||||    
T  10047338 tttgattatgcttgtggtgttgctctacacttagatctatgtctatttt--tgttgttattgcttggagacactttatccattgattaccacttcctttg 10047241  T
Q  392 ctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 440  Q
    |||||||||| ||||||  | ||||||||||||||||||||||| ||||||    
T  10047240 ctccacacatttttgttattcattggtgtgattttgtccgaattcacaaca 10047190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 424
Target Start/End: Original strand, 16624147 - 16624279
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| ||| |||||||||||||| ||||  || || ||| ||| ||||  |||||||||||||||  |  ||||||| || ||| |||||||| |||||    
T  16624147 tttgattattcttgtggtgttgctctacacttaaatctaggtctgtttt--tgttgttgttgcttggagacactttacacattgattatcacttcctttg 16624244  T
Q  392 ctccacacatctttgt--ttgattggtgtgatttt 424  Q
    ||||||||||||||||  || ||||||||||||||    
T  16624245 ctccacacatctttgttattcattggtgtgatttt 16624279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 424
Target Start/End: Complemental strand, 5147639 - 5147504
Alignment:
Q  289 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttct 388  Q
    |||||||| |||| ||||||||||||| ||||  ||||||||| ||| ||  |||||||||||| ||||  |  ||||||| || ||| || ||||| ||    
T  5147639 tgttttgattatgtttgtggtgttgctctacacttagatttaggtctgtt--attgttgttgtttcttggagacactttacacattgattaccacttcct 5147542  T
Q  389 ttgctccacacatctttgt--ttgattggtgtgatttt 424  Q
    |||||||||||||| ||||  || ||||||||||||||    
T  5147541 ttgctccacacatcattgttattcattggtgtgatttt 5147504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 38152576 - 38152641
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 357  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| ||| |||||||||||||||||||||    
T  38152576 tttgattatgcttgtggtgttgctatacacttagatctaggtctgttttattgttgttgttgcttg 38152641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 439
Target Start/End: Complemental strand, 39245956 - 39245805
Alignment:
Q  289 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttct 388  Q
    |||||||| ||||| |||||||||||| ||||  ||||||||| ||| |||| |||||||||||| |||  |  ||||||   | ||| || |||||  |    
T  39245956 tgttttgattatgcctgtggtgttgctctacacttagatttaggtctgtttt-ttgttgttgttgtttggagacactttatctattgattaccacttcat 39245858  T
Q  389 ttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaac 439  Q
    | ||||||||||||||| |  || ||||||||||||||||||||||| |||||    
T  39245857 tcgctccacacatctttattattcattggtgtgattttgtccgaattcacaac 39245805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 424
Target Start/End: Original strand, 16630818 - 16630950
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||||||||  ||||| ||| | | |||  ||||||||| ||||||  |  ||||||| || ||| || || || |||||    
T  16630818 tttgattatgcttgtggtgttgctttacacttagatctaggtttgttt--ttgttgttgctgcttggagacactttacacattgattaccagttcctttg 16630915  T
Q  392 ctccacacatctttgt--ttgattggtgtgatttt 424  Q
    ||||||||||||||||  || ||||||||||||||    
T  16630916 ctccacacatctttgttattcattggtgtgatttt 16630950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 441
Target Start/End: Original strand, 34496009 - 34496109
Alignment:
Q  342 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttg-tttgattggtgtgattttgtccgaattaacaaca 440  Q
    ||||||||||||||||| |||| |||   || ||| || | ||  |||||||||||||||||||| ||| ||||||||||||||| ||||||| ||||||    
T  34496009 ttgttgttgttgcttgaggctattttgtccattgattaccgctacctttgctccacacatctttgttttcattggtgtgattttgaccgaattcacaaca 34496108  T
Q  441 g 441  Q
    |    
T  34496109 g 34496109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 372
Target Start/End: Complemental strand, 37781822 - 37781743
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactca 372  Q
    ||||||||||||||||||||||||| |||  ||||| ||| |||| ||| ||| |||||||| |||||| |||||||||||    
T  37781822 tttgaatatgcttgtggtgttgcttcacacttagatctaggtcta-tttgttgatgttgttgattgatgatactttactca 37781743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 408
Target Start/End: Complemental strand, 5143221 - 5143104
Alignment:
Q  289 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttct 388  Q
    |||||||| |||| ||||||||||| | ||||  ||||||||| ||| ||||  ||||||||||| |||  |  ||||||| || ||| || ||||| ||    
T  5143221 tgttttgattatgtttgtggtgttgttctacacttagatttaggtctgtttt--tgttgttgttgtttggagacactttacacattgattaccacttcct 5143124  T
Q  389 ttgctccacacatctttgtt 408  Q
    |||||||||||||| |||||    
T  5143123 ttgctccacacatcattgtt 5143104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 409
Target Start/End: Original strand, 5396860 - 5396927
Alignment:
Q  342 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttgttt 409  Q
    ||||||||||||||||  |  ||||||| || ||| || ||||| |||||||||||||||||||||||    
T  5396860 ttgttgttgttgcttggagacactttacacattgattaccacttcctttgctccacacatctttgttt 5396927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 440
Target Start/End: Complemental strand, 24333675 - 24333621
Alignment:
Q  388 tttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 440  Q
    |||||||||||||||||||||  | |||||||||||||||| |||||| ||||||    
T  24333675 tttgctccacacatctttgttattcattggtgtgattttgtacgaattcacaaca 24333621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 441
Target Start/End: Complemental strand, 31979472 - 31979323
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||| ||||||| ||||  ||||||||| ||| ||||  |||||||||||||||| |  ||||||   | ||| || ||||| |||||    
T  31979472 tttgattatgcttgtgatgttgctctacacttagatttaggtctgtttt--tgttgttgttgcttgaagacactttatctattgattaccacttcctttg 31979375  T
Q  392 ctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaacag 441  Q
    |||||||||||||||||  | | ||||||||||||||||||||| |||||||    
T  31979374 ctccacacatctttgttatttagtggtgtgattttgtccgaattcacaacag 31979323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 440
Target Start/End: Original strand, 5572740 - 5572882
Alignment:
Q  298 tatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccac 397  Q
    |||||||||||||||||| ||||  ||||||||  ||| ||||  || ||||||||||||  |  ||||||   | ||| || ||||| |||||||||||    
T  5572740 tatgcttgtggtgttgctctacacttagatttatgtctgtttt--tgctgttgttgcttggagacactttatctattgattaccacttcctttgctccac 5572837  T
Q  398 acatctttgtt--tgattggtgtgattttgtccgaattaacaaca 440  Q
    |||||||||||  | ||||||||||||||||||||||| ||||||    
T  5572838 acatctttgttattcattggtgtgattttgtccgaattcacaaca 5572882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 441
Target Start/End: Original strand, 10077303 - 10077452
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||  |  ||||||   | ||| || ||||| |||||    
T  10077303 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttggagacactttatctattgattaccacttcctttg 10077400  T
Q  392 ctccacacatctttg--tttgattggtgtgattttgtccgaattaacaacag 441  Q
    ||||||||||||| |   || ||| ||||||||||||||||||| |||||||    
T  10077401 ctccacacatcttcgctattcattagtgtgattttgtccgaattcacaacag 10077452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 442
Target Start/End: Complemental strand, 27165614 - 27165513
Alignment:
Q  342 ttgttgttgttgcttgatgctacttta-ctcactgaatatcactttctttgctccacacatctttgtttgattggtgtgattttgtccgaattaacaaca 440  Q
    |||||||||||||||||  |||||||  |||| ||| ||  |||| ||||||||||||||||||||||  |||||||| ||||||| |||||||||| ||    
T  27165614 ttgttgttgttgcttgagactacttttgctcattgattacgacttcctttgctccacacatctttgttatattggtgtaattttgtacgaattaacatca 27165515  T
Q  441 ga 442  Q
    ||    
T  27165514 ga 27165513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 292 - 425
Target Start/End: Complemental strand, 22963659 - 22963526
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| ||| |||| ||||||||||||||||  |  |||||| | | ||| || ||||| ||| |    
T  22963659 tttgattatgcttgtggtgttgctctacacttagatctaggtctgtttt-ttgttgttgttgcttggagacactttattaattgattaccacttccttag 22963561  T
Q  392 ctccacacatctttgtttg-attggtgtgattttg 425  Q
    ||||||||||| | ||||| |||||||||||||||    
T  22963560 ctccacacatcatagtttgtattggtgtgattttg 22963526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 292 - 425
Target Start/End: Original strand, 23824734 - 23824867
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| ||| |||| ||||||||||||||||  |  |||||| | | ||| || ||||| ||| |    
T  23824734 tttgattatgcttgtggtgttgctctacacttagatctaggtctgtttt-ttgttgttgttgcttggagacactttattaattgattaccacttccttag 23824832  T
Q  392 ctccacacatctttgtttg-attggtgtgattttg 425  Q
    ||||||||||| | ||||| |||||||||||||||    
T  23824833 ctccacacatcatagtttgtattggtgtgattttg 23824867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 342 - 409
Target Start/End: Complemental strand, 21355949 - 21355882
Alignment:
Q  342 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttgttt 409  Q
    ||||||||||||||||| |  ||||||| || ||| || ||||| |||||||||||||||||||||||    
T  21355949 ttgttgttgttgcttgaagacactttacacattgattaccacttcctttgctccacacatctttgttt 21355882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 408
Target Start/End: Original strand, 5017606 - 5017724
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgtt--gttgttgcttgatgctactttactcactgaatatcactttctt 389  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| ||| |||| || ||  |||||||||||  |  ||||||  || ||| || ||||| |||    
T  5017606 tttgattatgcttgtggtgttgctctacacttagatctaggtctgttttttttttttgttgttgcttggagacactttatccattgattaccacttcctt 5017705  T
Q  390 tgctccacacatctttgtt 408  Q
    |||||||||||||||||||    
T  5017706 tgctccacacatctttgtt 5017724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 440
Target Start/End: Original strand, 31086687 - 31086749
Alignment:
Q  381 cactttctttgctccacacatctttgt--ttgattggtgtgattttgt-ccgaattaacaaca 440  Q
    ||||| |||||||||||||||||||||  || |||||||||||||||| ||||||| ||||||    
T  31086687 cacttcctttgctccacacatctttgttcttcattggtgtgattttgtaccgaattcacaaca 31086749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 440
Target Start/End: Original strand, 31077146 - 31077240
Alignment:
Q  346 tgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttgtttgattggtgtgattttgtccgaattaacaaca 440  Q
    |||| |||||||| ||||||||||||| ||| ||  | || |||| ||| ||||||||| |||| |||| |||||||||||  ||||| ||||||    
T  31077146 tgttattgcttgaggctactttactcattgattactatttccttttctctacacatcttcgtttcattgatgtgattttgttggaattcacaaca 31077240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 433
Target Start/End: Original strand, 21801584 - 21801627
Alignment:
Q  392 ctccacacatctttgtt--tgattggtgtgattttgtccgaatt 433  Q
    |||||||||||||||||  | |||||||||||||||||||||||    
T  21801584 ctccacacatctttgttattcattggtgtgattttgtccgaatt 21801627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 424
Target Start/End: Complemental strand, 31936540 - 31936414
Alignment:
Q  298 tatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttc-tttgctcca 396  Q
    |||||||||||||||||| ||||  | |||| || ||| ||   ||||||||||||||||  |  ||||||| || ||| || ||||| | |||||||||    
T  31936540 tatgcttgtggtgttgctctacactttgattaaggtctgtt---ttgttgttgttgcttggagacactttacacattgattaccacttccttttgctcca 31936444  T
Q  397 cacatctttg--tttgattggtgtgatttt 424  Q
    ||||||||||  ||| ||||||||||||||    
T  31936443 cacatctttgtttttcattggtgtgatttt 31936414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 292 - 440
Target Start/End: Complemental strand, 775631 - 775483
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| ||||  |||||||||||||||  |  ||||||   | ||  || ||||| |||||    
T  775631 tttgattatgcttgtggtgttgctctacacttagatttaggtctgtttt--tgttgttgttgcttggagacactttatctattggttaccacttcctttg 775534  T
Q  392 ctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 440  Q
    |||||||||||||||||  | ||||||||||||||||||||||| ||||||    
T  775533 ctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 775483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 342 - 440
Target Start/End: Original strand, 17345704 - 17345805
Alignment:
Q  342 ttgttgttgttgcttgatgctacttt-actcactgaatatcactttctttgctccacacatctttgtttgattggtgtgatt--ttgtccgaattaacaa 438  Q
    ||||||||||||||||| |||||||| ||||| ||| ||  |||| ||||||||||||||||||||||| ||||||||| ||  ||||||||||| ||||    
T  17345704 ttgttgttgttgcttgaggctacttttactcattgattactacttcctttgctccacacatctttgtttcattggtgtggtttcttgtccgaattcacaa 17345803  T
Q  439 ca 440  Q
    ||    
T  17345804 ca 17345805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 441
Target Start/End: Complemental strand, 29651770 - 29651619
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  ||||| ||  ||| |||| |||||||||||| ||   |  |||||| ||| ||| || ||||| |||||    
T  29651770 tttgattatgcttgtggtgttgctctacacttagatctaagtctgtttt-ttgttgttgttgattatagacactttattcattgattaccacttcctttg 29651672  T
Q  392 ctccacacatctttgt--ttgattggtgtga-ttttgtccgaattaacaacag 441  Q
    ||||||||||||||||  || |||||||||| ||||||||||||| |||||||    
T  29651671 ctccacacatctttgttattcattggtgtgatttttgtccgaattcacaacag 29651619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 440
Target Start/End: Original strand, 40816870 - 40817020
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||| ||||||||||| ||||  ||||||||| ||| |||| ||||||||||||||||  |  ||||||   | ||| || ||||| |||||    
T  40816870 tttgattatgctcgtggtgttgctctacacttagatttaggtctgtttt-ttgttgttgttgcttggagacactttatctattgattaccacttcctttg 40816968  T
Q  392 ctccacacatctttgt--ttgattggtgtg-attttgtccgaattaacaaca 440  Q
    ||||||||||||||||  || |||||||||  ||||||||||||| ||||||    
T  40816969 ctccacacatctttgttattcattggtgtgttttttgtccgaattcacaaca 40817020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 440
Target Start/End: Original strand, 13604830 - 13604909
Alignment:
Q  363 actttactcactgaatatcactttcttt-gctccacacatctttgtttg-attggtgtgattttgtccgaattaacaaca 440  Q
    ||||||| || ||| |||||||| |||| |||||||||||||||||||  ||||||||||||||||||||||| ||||||    
T  13604830 actttacacattgattatcacttccttttgctccacacatctttgtttacattggtgtgattttgtccgaattcacaaca 13604909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 302 - 409
Target Start/End: Complemental strand, 32889387 - 32889282
Alignment:
Q  302 cttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttc-tttgctccacaca 400  Q
    |||||||||||||| ||||  ||||||||||||| ||   |||||||| |||||||  |  ||||||| || ||| |||||||||| |||||||||||||    
T  32889387 cttgtggtgttgctctacacttagatttagatctgtt---ttgttgttattgcttggagacactttacacattgattatcactttcttttgctccacaca 32889291  T
Q  401 tctttgttt 409  Q
    |||||||||    
T  32889290 tctttgttt 32889282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 440
Target Start/End: Original strand, 9023971 - 9024116
Alignment:
Q  293 ttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgc 392  Q
    |||| |||||||||||||||||| ||||  ||||||||| | | |||    |||||| |||||||  |||||||||  || ||| || |||||||| |||    
T  9023971 ttgattatgcttgtggtgttgctatacacttagatttaggtatgttt----gttgttattgcttggggctactttatccattgattaccactttctctgc 9024066  T
Q  393 tccacacatctttgtttg--attggtgtgattttgtccgaattaacaaca 440  Q
    ||||||| |||||||||   |||||||||||||||||  |||| ||||||    
T  9024067 tccacacttctttgtttttcattggtgtgattttgtctaaattcacaaca 9024116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 433
Target Start/End: Complemental strand, 19072889 - 19072744
Alignment:
Q  289 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttct 388  Q
    |||||||| |||||||||||||||||| ||||  ||||||||| |||  ||| |||||||||||||||   |  ||||||   | ||| ||  |||| ||    
T  19072889 tgttttgattatgcttgtggtgttgctctacacttagatttaggtctgattt-ttgttgttgttgcttcgagacactttatctattgattactacttcct 19072791  T
Q  389 ttgctccacacatctttgt--ttgattggtgtgattttgtccgaatt 433  Q
    ||| |||||| ||||||||  || |||||||||||||||||||||||    
T  19072790 ttgttccacatatctttgttattcattggtgtgattttgtccgaatt 19072744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 433
Target Start/End: Complemental strand, 19120779 - 19120634
Alignment:
Q  289 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttct 388  Q
    |||||||| |||||||||||||||||| ||||  ||||||||| |||  ||| |||||||||||||||   |  ||||||   | ||| ||  |||| ||    
T  19120779 tgttttgattatgcttgtggtgttgctctacacttagatttaggtctgattt-ttgttgttgttgcttcgagacactttatctattgattactacttcct 19120681  T
Q  389 ttgctccacacatctttgt--ttgattggtgtgattttgtccgaatt 433  Q
    ||| |||||| ||||||||  || |||||||||||||||||||||||    
T  19120680 ttgttccacatatctttgttattcattggtgtgattttgtccgaatt 19120634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 440
Target Start/End: Original strand, 50521288 - 50521389
Alignment:
Q  342 ttgttgttgttgcttgatgctacttt-actcactgaatatcactttctttgctccacacatctttgtttg--attggtgtgattttgtccgaattaacaa 438  Q
    |||||||||||| ||||  ||||||| ||||| ||| || ||||| |||| |||||||||||||| |||   |||| |||||||||||||||||| ||||    
T  50521288 ttgttgttgttgtttgagactacttttactcattgattaccacttcctttactccacacatctttattttttattgatgtgattttgtccgaattcacaa 50521387  T
Q  439 ca 440  Q
    ||    
T  50521388 ca 50521389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 424
Target Start/End: Original strand, 21536714 - 21536839
Alignment:
Q  298 tatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccac 397  Q
    |||||||||||||||||| ||||   || | ||| ||||||||  ||||||||||| |||  |  ||||||| || ||| || ||||| |||||||||||    
T  21536714 tatgcttgtggtgttgctctacagtaag-tctaggtctatttt--tgttgttgttgattggagacactttacacattgattaccacttcctttgctccac 21536810  T
Q  398 acatctttg--tttgattggtgtgatttt 424  Q
    |||||||||  ||| ||||||||||||||    
T  21536811 acatctttgtttttcattggtgtgatttt 21536839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 423
Target Start/End: Original strand, 26645083 - 26645166
Alignment:
Q  342 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttgt--ttgattggtgtgattt 423  Q
    ||||||||||||||| | |  ||||||| || ||| || |||||  ||||||||||||||||||||  || |||||||||||||    
T  26645083 ttgttgttgttgcttaaagacactttacacattgattaccacttcatttgctccacacatctttgttattcattggtgtgattt 26645166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 289 - 440
Target Start/End: Complemental strand, 48438176 - 48438025
Alignment:
Q  289 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttct 388  Q
    |||||||| |||||||||||||||||| ||||  ||||| ||| ||| |||  ||||||||||||||||  | |||||||   | ||| || || || ||    
T  48438176 tgttttgattatgcttgtggtgttgctctacacttagatctaggtctgttt--ttgttgttgttgcttggagatactttatctattgattaccatttcct 48438079  T
Q  389 ttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 440  Q
    |||||||||||||| ||||  || |||| |||||||||||||||||| ||||||    
T  48438078 ttgctccacacatccttgttattcattgatgtgattttgtccgaattcacaaca 48438025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 440
Target Start/End: Original strand, 18554502 - 18554563
Alignment:
Q  381 cactttctttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 440  Q
    |||||||||||||||||||||||||||  || ||||||||||||||||||||||| ||||||    
T  18554502 cactttctttgctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 18554563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 440
Target Start/End: Complemental strand, 27038249 - 27038100
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  ||||| ||||||| |||  ||||||||||||||||| |  ||||||| || ||| || || ||  ||||    
T  27038249 tttgattatgcttgtggtgttgctctacacttagatctagatctgttt--ttgttgttgttgcttgaagacactttacacattgattaccatttcatttg 27038152  T
Q  392 ctccacacatctttgt--ttgattggtgtgattttgt-ccgaattaacaaca 440  Q
    ||||||||||||| ||  || |||||||||||||| | ||||||| ||||||    
T  27038151 ctccacacatcttagttattcattggtgtgattttttaccgaattcacaaca 27038100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 337 - 421
Target Start/End: Original strand, 4387102 - 4387186
Alignment:
Q  337 ttttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttgtttgattggtgtgat 421  Q
    |||| |||||||||||||||   ||||||||||||| ||| ||  |||||||||||||||||||| ||||||| |||||| ||||    
T  4387102 tttttttgttgttgttgcttatggctactttactcattgattactactttctttgctccacacatttttgtttcattggtatgat 4387186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 440
Target Start/End: Original strand, 40592911 - 40593063
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||||||||  |  | ||||  || ||| || ||||| |||||    
T  40592911 tttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgttgcttggagacattttatccattgattaccacttcctttg 40593008  T
Q  392 ctccacacatctttgt-----ttgattggtgtgattttg-tccgaattaacaaca 440  Q
    ||||||||||||||||     || ||||||||||||||| |||||||| ||||||    
T  40593009 ctccacacatctttgttgttattcattggtgtgattttgttccgaattcacaaca 40593063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 382 - 440
Target Start/End: Original strand, 4387249 - 4387307
Alignment:
Q  382 actttctttgctccacacatctttgtttgattggtgtgattttgtccgaattaacaaca 440  Q
    |||| ||||||||||||||||||||||| |||| |||||||||||  ||||||||||||    
T  4387249 acttcctttgctccacacatctttgtttcattgctgtgattttgtaggaattaacaaca 4387307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 424
Target Start/End: Original strand, 30709919 - 30710051
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| ||||||| |||||||||| || |  ||||| ||| ||| ||||  |||||||||||||||  |  ||||||| || ||| || ||||| |||||    
T  30709919 tttgattatgcttatggtgttgctctaaacttagatctaggtctgtttt--tgttgttgttgcttggagacactttacacattgattaccacttcctttg 30710016  T
Q  392 ctccacacatctttgt--ttgattggtgtgatttt 424  Q
    ||||||||||||||||  || ||||||||||||||    
T  30710017 ctccacacatctttgttattcattggtgtgatttt 30710051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 292 - 440
Target Start/End: Original strand, 27986574 - 27986720
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttcttt- 390  Q
    |||| ||||||||||||||||||| ||||  |||| | || ||||||||  |||||||||||||||| |  ||||||| ||  || || ||||| ||||     
T  27986574 tttgtatatgcttgtggtgttgctctacac-tagact-aggtctatttt--tgttgttgttgcttgaagacactttacacatagattaccacttcctttt 27986669  T
Q  391 gctccacacatctttgtttg-attggtgtgattttgtccgaattaacaaca 440  Q
    |||||| ||||||||||||  |||||||||| |||||||||||| ||||||    
T  27986670 gctccatacatctttgtttacattggtgtgagtttgtccgaattcacaaca 27986720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 440
Target Start/End: Original strand, 3323778 - 3323839
Alignment:
Q  381 cactttctttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 440  Q
    ||||| |||||||||||||||||||||  || |||||||||||||||| |||||| ||||||    
T  3323778 cacttcctttgctccacacatctttgttattcattggtgtgattttgtacgaattcacaaca 3323839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 440
Target Start/End: Original strand, 6794927 - 6794988
Alignment:
Q  381 cactttctttgctccacacatctttgtttg--attggtgtgattttgtccgaattaacaaca 440  Q
    ||||| |||||||||||||||| ||||||   ||||||||||||||||||||||| ||||||    
T  6794927 cacttcctttgctccacacatcgttgtttttcattggtgtgattttgtccgaattcacaaca 6794988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 424
Target Start/End: Complemental strand, 36029058 - 36028932
Alignment:
Q  298 tatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccac 397  Q
    |||||||||||||||||| || |  ||||| ||| ||| ||||  |||||||||||||||  |  ||||||| || ||| || |||||  ||||||||||    
T  36029058 tatgcttgtggtgttgctctatacttagatctaggtctgtttt--tgttgttgttgcttggagacactttacacattgattaccacttcatttgctccac 36028961  T
Q  398 acatctttgt--ttgattggtgtgatttt 424  Q
    ||||||||||  || ||||||||||||||    
T  36028960 acatctttgttattcattggtgtgatttt 36028932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 428
Target Start/End: Original strand, 1417665 - 1417753
Alignment:
Q  342 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttg--tttgattggtgtgattttgtcc 428  Q
    ||||||||||||||||| |  ||||||   | ||| || ||||| ||||||||||||||||||||  ||| ||||||||||||||||||    
T  1417665 ttgttgttgttgcttgaagacactttatctattgattaccacttcctttgctccacacatctttgtttttcattggtgtgattttgtcc 1417753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 424
Target Start/End: Complemental strand, 27026904 - 27026772
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| ||| ||||  | |||||||||||||  |  ||||||| || ||| || || ||  ||||    
T  27026904 tttgattatgcttgtggtgttgctctacacttagatctaggtctgtttt--tcttgttgttgcttggagacactttacacattgattaccatttcatttg 27026807  T
Q  392 ctccacacatctttgt--ttgattggtgtgatttt 424  Q
    ||||||||||||||||  || ||||||||||||||    
T  27026806 ctccacacatctttgttattcattggtgtgatttt 27026772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 440
Target Start/End: Complemental strand, 37466157 - 37466102
Alignment:
Q  387 ctttgctccacacatctttgtt--tgattggtgtgattttgtccgaattaacaaca 440  Q
    ||||||||| ||||||||||||  | ||||||||||||||||||||||| ||||||    
T  37466157 ctttgctcctcacatctttgttatttattggtgtgattttgtccgaattcacaaca 37466102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 429
Target Start/End: Complemental strand, 1417177 - 1417088
Alignment:
Q  342 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttgt--ttgattggtgtgattttgtccg 429  Q
    ||||||||||||||||  |  ||||||| || ||| || ||||| |||| |||||||||||||| |  || |||||||||||||||||||    
T  1417177 ttgttgttgttgcttggagacactttacacattgattaccacttcctttactccacacatctttattattcattggtgtgattttgtccg 1417088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 442
Target Start/End: Complemental strand, 2074938 - 2074881
Alignment:
Q  387 ctttgctccacacatctttgtttgattggtgtgatttt--gtccgaattaacaacaga 442  Q
    |||||||||||||||| | |||| ||||||||||||||  ||||||||| ||||||||    
T  2074938 ctttgctccacacatcatagttttattggtgtgattttgggtccgaattcacaacaga 2074881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 405
Target Start/End: Original strand, 8370615 - 8370726
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttg 391  Q
    ||||| |||||||||||||||||| ||||  ||||| ||| ||| |||  ||||||||||||||||  |  ||||||| || ||| || | ||| ||||     
T  8370615 tttgattatgcttgtggtgttgctctacacttagatctaggtctgttt--ttgttgttgttgcttggagacactttacacattgattacctcttccttta 8370712  T
Q  392 ctccacacatcttt 405  Q
    ||||||||||||||    
T  8370713 ctccacacatcttt 8370726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 409
Target Start/End: Complemental strand, 35925445 - 35925326
Alignment:
Q  288 gtgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttc 387  Q
    ||||||||| |||||||||||||||||| ||||  ||||| ||| ||| |||  ||||||||||| ||||  |  | ||||| || ||| || ||| | |    
T  35925445 gtgttttgattatgcttgtggtgttgctctacacttagatctaggtctgttt--ttgttgttgttacttggagacattttacacattgattaccacctgc 35925348  T
Q  388 tttgctccacacatctttgttt 409  Q
    ||||||||||| ||||||||||    
T  35925347 tttgctccacatatctttgttt 35925326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 357
Target Start/End: Original strand, 3328481 - 3328547
Alignment:
Q  289 tgttttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttg 357  Q
    |||||||| |||||||||||||||||| ||||  ||||||||| ||| |||  ||||||||||| ||||    
T  3328481 tgttttgattatgcttgtggtgttgctctacacttagatttaggtctgttt--ttgttgttgtttcttg 3328547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 440
Target Start/End: Original strand, 33386842 - 33386942
Alignment:
Q  342 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttg-ctccacacatctttgttt-gattggtgtgattttgtccgaattaacaac 439  Q
    ||||||||||||||||  |  ||||||| || ||| || ||||| ||||  ||||||||||||||||||  |||||||||| |||||||| ||| |||||    
T  33386842 ttgttgttgttgcttggagacactttacacattgattaccacttccttttactccacacatctttgtttacattggtgtgagtttgtccggattcacaac 33386941  T
Q  440 a 440  Q
    |    
T  33386942 a 33386942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 441
Target Start/End: Original strand, 29620 - 29778
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgt------tgttgttgcttgatgctactttactcactgaatatcactt 385  Q
    ||||| ||||||||||||||||||||||| |||| ||| || || |||| ||||      |||||||| |||| | ||||||||||| ||| || |||||    
T  29620 tttgattatgcttgtggtgttgctttacacatagtttttgaactgttttgttgttgttgttgttgttggttgaggatactttactcattgattaccactt 29719  T
Q  386 tctttgctccacacatctttg--tttgattggtgtga-ttttgtccgaattaacaacag 441  Q
     ||||||| ||||||| ||||  ||| |||||||||| ||||| ||||||| |||||||    
T  29720 cctttgcttcacacatttttgtttttcattggtgtgatttttgaccgaattcacaacag 29778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 441
Target Start/End: Complemental strand, 43224 - 43066
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgct------tgatgctactttactcactgaatatcactt 385  Q
    ||||| ||||||||||||||||||||||| |||| ||| || || |||| |||||||||||| |      ||| | ||||||||||| ||| || |||||    
T  43224 tttgattatgcttgtggtgttgctttacacatagtttttgaactgttttgttgttgttgttgttgttggttgaggatactttactcattgattaccactt 43125  T
Q  386 tctttgctccacacatctttg--tttgattggtgtga-ttttgtccgaattaacaacag 441  Q
     ||||||| ||||||| ||||  ||| |||||||||| ||||| ||||||| |||||||    
T  43124 cctttgcttcacacatttttgtttttcattggtgtgatttttgaccgaattcacaacag 43066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 424
Target Start/End: Complemental strand, 23483 - 23357
Alignment:
Q  297 atatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctcca 396  Q
    ||||||||||||||||||||||||  ||| |||| | || ||   |||||||| |||||||| | || |||||||| ||| || ||||| |||||||| |    
T  23483 atatgcttgtggtgttgctttacacttagttttataactgtt---ttgttgttattgcttgaggatattttactcattgattaccacttcctttgctcaa 23387  T
Q  397 cacatcttt--gtttgattggtgtgatttt 424  Q
    |||||||||   ||| ||||||||||||||    
T  23386 cacatctttactttttattggtgtgatttt 23357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 363 - 440
Target Start/End: Original strand, 133487 - 133566
Alignment:
Q  363 actttactcactgaatatcactttcttt-gctccacacatctttgtttg-attggtgtgattttgtccgaattaacaaca 440  Q
    ||||||| || ||| |||||||| |||| |||||||||||||||||||  ||||||||||||||||||||||| ||||||    
T  133487 actttacacattgattatcacttccttttgctccacacatctttgtttacattggtgtgattttgtccgaattcacaaca 133566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 432
Target Start/End: Complemental strand, 10688 - 10546
Alignment:
Q  292 tttgaatatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactt-tcttt 390  Q
    ||||| |||||||||||||||||| ||||  ||||||||| ||| |||| ||||||||||||||||  |  ||||||   |  || || ||||| | |||    
T  10688 tttgattatgcttgtggtgttgctctacacttagatttaggtctgtttt-ttgttgttgttgcttggagtaactttatctatcgattaccacttcttttt 10590  T
Q  391 gctccacacatctttgt--ttgattggtgtgattttgtccgaat 432  Q
    |||||||||||||||||  || |||||||||||||||| |||||    
T  10589 gctccacacatctttgttattcattggtgtgattttgtacgaat 10546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 409
Target Start/End: Original strand, 44105 - 44212
Alignment:
Q  298 tatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccac 397  Q
    |||||||||||||||||| ||||  |||||| || ||| ||||  |||||||||||||||  |  ||||||| || ||| || ||||| |||||||||||    
T  44105 tatgcttgtggtgttgctctacac-tagatt-aggtctgtttt--tgttgttgttgcttggagacactttacacattgattaccacttcctttgctccac 44200  T
Q  398 acatctttgttt 409  Q
    ||||||||||||    
T  44201 acatctttgttt 44212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 409
Target Start/End: Original strand, 37018 - 37085
Alignment:
Q  342 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttgttt 409  Q
    ||||||||||||||||  |  ||||||| || ||| || ||||| |||||||||||||||||||||||    
T  37018 ttgttgttgttgcttggagacactttacacattgattaccacttcctttgctccacacatctttgttt 37085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1805 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1805
Description:

Target: scaffold1805; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 409
Target Start/End: Complemental strand, 1319 - 1252
Alignment:
Q  342 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttgttt 409  Q
    ||||||||||||||||  |  ||||||| || ||| || ||||| |||||||||||||||||||||||    
T  1319 ttgttgttgttgcttggagacactttacacattgattaccacttcctttgctccacacatctttgttt 1252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 424
Target Start/End: Complemental strand, 85637 - 85512
Alignment:
Q  298 tatgcttgtggtgttgctttacaaatagatttagatctattttattgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccac 397  Q
    |||||||||| ||||||| ||||  ||||| ||| ||| ||||||||||||||   ||||  |  ||||||| || ||| || ||||| |||||||| ||    
T  85637 tatgcttgtgatgttgctctacacttagatctaggtctgttttattgttgttg---cttggagacactttacacattgattaccacttcctttgctctac 85541  T
Q  398 acatctttg--tttgattggtgtgatttt 424  Q
    |||||||||  ||| ||||||||||||||    
T  85540 acatctttgtttttcattggtgtgatttt 85512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 440
Target Start/End: Complemental strand, 17138 - 17077
Alignment:
Q  381 cactttctttgctccacacatctttgt--ttgattggtgtgattttgtccgaattaacaaca 440  Q
    ||||| |||||||||||||||||||||  || |||  |||||||||||||||||| ||||||    
T  17138 cacttcctttgctccacacatctttgttattcattcatgtgattttgtccgaattcacaaca 17077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 422
Target Start/End: Complemental strand, 45166 - 45085
Alignment:
Q  342 ttgttgttgttgcttgatgctactttactcactgaatatcactttctttgctccacacatctttg-tttgattggtgtgatt 422  Q
    ||||||||||||||||  |  ||||||| || ||| || |||||  ||||||||||||||||||| ||| ||||||||||||    
T  45166 ttgttgttgttgcttggagacactttacacattgattaccacttcatttgctccacacatctttgttttaattggtgtgatt 45085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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