View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16454_high_6 (Length: 308)
Name: NF16454_high_6
Description: NF16454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16454_high_6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 308
Target Start/End: Original strand, 42978136 - 42978434
Alignment:
| Q |
11 |
cagagacttcccctggtttattctttcgtcatgcggggcataggtatgatagcagatggttttacacatgttcatttatct--ttattcagttctttgga |
108 |
Q |
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| T |
42978136 |
cagagacttcccctggtttattctttcgtcatgcagggcataggtatgatagcagatggttttacacatgttcatttatctctttattcagttctttgga |
42978235 |
T |
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| Q |
109 |
attcagcattatgttatatgctagtatgtttaagtggttggagtttttgttcccactggtattgttgcatgtaacactgatggactcctttaataacgtt |
208 |
Q |
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| T |
42978236 |
attcagcattatgt-atatgctagtatgtttaagtggttggagtttttgttcccactggtattgttgcatgtaacactgatggactcctttaataacgtt |
42978334 |
T |
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| Q |
209 |
tcaataccaatgaaaacaaatgttcattgatgtattcagggataaggttgttgactttcattggaatgcatctgatccatggacaattgttagtgtatct |
308 |
Q |
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| T |
42978335 |
tcaataccaatgaaaacaaatgttcattgatgtattcagggataaggttgttgactttcattggaatgcatctgatccatggacaattgttagtgtatct |
42978434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 17190769 - 17190720
Alignment:
| Q |
255 |
gttgttgactttcattggaatgcatctgatccatggacaattgttagtgt |
304 |
Q |
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| T |
17190769 |
gttgttgactttcactggaatgcacatgatccatggacacttgttagtgt |
17190720 |
T |
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