View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16455_high_2 (Length: 410)
Name: NF16455_high_2
Description: NF16455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16455_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 7 - 183
Target Start/End: Original strand, 6246422 - 6246598
Alignment:
| Q |
7 |
acatcatcaaacaacaaaaacagcaacgttgttgatgaagatgatgatagccaaggtggttttgctttctcagttaaccatgaatcaaataaatcgtcga |
106 |
Q |
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| T |
6246422 |
acatcatcaaacaacaaaaacagcaacgttgttgatgaagatgatgatagccaaggtggttttgctttctcagttaaccatgaatcaaataaatcgtcga |
6246521 |
T |
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| Q |
107 |
ctcgttcagctgaagaactctttcatggtggcaaaatcaaaccatttactaatgaagaagctaaggttgttgtacct |
183 |
Q |
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| T |
6246522 |
ctcgttcagctgaagaactctttcatggtggcaaaatcaaaccatttactaatgaagaagctaaggttgttgtacct |
6246598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 241 - 410
Target Start/End: Original strand, 6246656 - 6246825
Alignment:
| Q |
241 |
tcatcattgaataattctggtagaagaagttcaagatcacattctccttatagaaaatcaaactacatatcagaattggaagaacaaaactctcaaaaac |
340 |
Q |
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| T |
6246656 |
tcatcattgaataattctggtagaagaagttcaagatcacattctccttatagaaaatcaaactacatatcagaattggaagaacaaaactctcaaaaac |
6246755 |
T |
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| Q |
341 |
agcaacaacctcgtagcaacaaagaggaatcaaagatatcaaacagaagtacaggtcctggttcgatttc |
410 |
Q |
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| T |
6246756 |
agcaacaacctcgtagcaacaaagaggaatcaaagatatcaaacagtagtacaggtcctggttcgatttc |
6246825 |
T |
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