View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16455_high_4 (Length: 377)

Name: NF16455_high_4
Description: NF16455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16455_high_4
NF16455_high_4
[»] chr4 (11 HSPs)
chr4 (19-362)||(4883730-4884076)
chr4 (81-362)||(4905025-4905305)
chr4 (19-250)||(4924249-4924482)
chr4 (91-250)||(4646348-4646506)
chr4 (140-291)||(4874885-4875039)
chr4 (152-255)||(4893691-4893795)
chr4 (19-96)||(4904936-4905015)
chr4 (306-362)||(4924515-4924571)
chr4 (19-71)||(4646524-4646575)
chr4 (139-186)||(4874038-4874085)
chr4 (229-290)||(4874084-4874147)
[»] chr1 (2 HSPs)
chr1 (174-255)||(9112571-9112652)
chr1 (129-189)||(9129862-9129922)
[»] chr2 (1 HSPs)
chr2 (170-253)||(32270211-32270294)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 362
Target Start/End: Original strand, 4883730 - 4884076
Alignment:
Q  19 cttctgattagagaaatttttctagaaatccaatcaataaaggatatattattttgtgtattaatcctaacaatattctatggaatttgaaaacaaggca 118  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||   ||||||| |||||| |||||||||||||| |||||||||||  |    
T  4883730 cttctgattagagaaatttttctagacatccaatcaataaaggatatattattccttgtattagtcctaaaaatattctatggaacttgaaaacaagaga 4883829  T
Q  119 aagctatactag----tagccaagtaggtccttcatcattgactgtgggtgtgaccttatattgaaaaagtcacacatatattcttttctttttattacc 214  Q
    || |||||||||    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | || |||||||||||||    
T  4883830 aatctatactagctagtagccaagtaggtccttcatcattgactgtgggagtgaccttatattgaaaaagtcacacatatacttttatctttttattacc 4883929  T
Q  215 agccatgattaatttcctaatagggctaattgaaaccgagatgaggtacatgattcagattctttattgattgattgcnnnnnnnnnnnnngacccatgt 314  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| | |||||| |||||| |||||||||||||             |||||||||    
T  4883930 agccataattaatttcctaatagggctaattgaaaccgagatgaggtagaggattcaaattcttcattgattgattgc-ttttttatttttgacccatgt 4884028  T
Q  315 tgctttatgatttgagtgagtttgtggctattaggtgaatggaattga 362  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4884029 tgctttatgatttgagtgagtttgtggctgttaggtgaatggaattga 4884076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 81 - 362
Target Start/End: Original strand, 4905025 - 4905305
Alignment:
Q  81 aatcctaacaatattctatggaatttgaaaacaaggcaaagctatactagtagccaagtaggtccttcatcattgactgtgggtgtgaccttatattgaa 180  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4905025 aatcctaacaatattctatggaacttgaaaacaagccaaagctatactagaagccaagtaggtccttcatcattgactgtgggtgtgaccttatattgaa 4905124  T
Q  181 aaagtcacacatatattcttttctttttattaccagccatgattaatttcctaatagggctaattgaaaccgagatgaggtacatgattcagattcttta 280  Q
    |||||||||||| | || || ||||||||||||||||||||| |||||||||||||||| |||||||||||||||  |||||||||||||||||||||||    
T  4905125 aaagtcacacatgtttttttatctttttattaccagccatgactaatttcctaatagggttaattgaaaccgagagcaggtacatgattcagattcttta 4905224  T
Q  281 ttgattgattgcnnnnnnnnnnnnngacccatgttgctttatgatttgagtgagtttgtggctattaggtgaatggaattga 362  Q
    ||||||||||||             ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  4905225 ttgattgattgc-ttttttatttttgacccatgttgctctatgatttgagtgagtttgtggctgttaggtgaatggaattga 4905305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 4924249 - 4924482
Alignment:
Q  19 cttctgattagagaaatttttctagaaatccaatcaat---aaaggatatattattttgtgtattaatcctaacaatattctatggaatttgaaaacaag 115  Q
    |||||||||||||||||||| ||||| |||||||||||   |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  4924249 cttctgattagagaaatttt-ctagacatccaatcaattataaaggatatattatttcgtgtattaatcctaacaatattctatggaacttgaaaacaag 4924347  T
Q  116 gcaaagctatactagtagccaagtaggtccttcatcattgactgtgggtgtgaccttatattgaaaaagtcacacatatattcttttctttttattacca 215  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || || ||||||||||||||    
T  4924348 ccaaagctatactagtagccaagtaggtccttcatcattgactgtgggtgtgaccttatattgaaaaagtcacacatgtttttttatctttttattacca 4924447  T
Q  216 gccatgattaatttcctaatagggctaattgaaac 250  Q
    ||||||| |||||||||||||||| ||||||||||    
T  4924448 gccatgactaatttcctaatagggttaattgaaac 4924482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 91 - 250
Target Start/End: Complemental strand, 4646506 - 4646348
Alignment:
Q  91 atattctatggaatttgaaaacaaggcaaagctatactagtagccaagtaggtccttcatcattgactgtgggtgtgaccttatattgaaaaagtcacac 190  Q
    ||||||||||||| || | || ||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||| |    
T  4646506 atattctatggaaatttagaaaaaggcaaagctatactagtagccaaataggtccttcatcatcgagtgtgggtgtgaccttatattgaaaaagtcacgc 4646407  T
Q  191 atatattcttttctttttattaccagccatgattaatttcctaatagggctaattgaaac 250  Q
    ||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4646406 atgcatt-ttttctttttattaccagccatgattaatttcctaatagggctaattgaaac 4646348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 140 - 291
Target Start/End: Original strand, 4874885 - 4875039
Alignment:
Q  140 aggtccttcatcattgactgtgggtgtgaccttatattgaaaa-agtcacacatatattcttttctttttattaccagccatgattaatttcctaatagg 238  Q
    |||||||||||||| || |||||||||||||||||| | |||| ||||||||||||  | ||||||||||||| |||  | ||||||||||||||||||     
T  4874885 aggtccttcatcatcgagtgtgggtgtgaccttatactcaaaaaagtcacacatatcattttttctttttattgccaagcttgattaatttcctaataga 4874984  T
Q  239 gctaattgaaaccgagatgaggtacat--gattcagattctttattgattgattg 291  Q
    ||||||||||||||||| |||||| ||  |||| | |||||| ||||||||||||    
T  4874985 gctaattgaaaccgagaggaggtagatcggatttaaattcttcattgattgattg 4875039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 4893691 - 4893795
Alignment:
Q  152 attgactgtgggtgtgaccttatattgaaaa-agtcacacatatattcttttctttttattaccagccatgattaatttcctaatagggctaattgaaac 250  Q
    ||||| |||||||||||||||||| |||||| ||||||||||||  | ||||| ||||||| || | | |||||||||||||||||| ||||||||||||    
T  4893691 attgagtgtgggtgtgaccttatactgaaaaaagtcacacatatcattttttcattttattgcctggcttgattaatttcctaatagagctaattgaaac 4893790  T
Q  251 cgaga 255  Q
    |||||    
T  4893791 cgaga 4893795  T

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Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 4904936 - 4905015
Alignment:
Q  19 cttctgattagagaaatttttctagaaatccaatcaat---aaaggatatattattttgtgtattaatcctaacaatattc 96  Q
    |||||||||||||||||||| ||||| |||||||||||   |||||||||||||||| |||||||||||||||||||||||    
T  4904936 cttctgattagagaaatttt-ctagacatccaatcaattataaaggatatattatttcgtgtattaatcctaacaatattc 4905015  T

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Target: chr4; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 306 - 362
Target Start/End: Original strand, 4924515 - 4924571
Alignment:
Q  306 gacccatgttgctttatgatttgagtgagtttgtggctattaggtgaatggaattga 362  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  4924515 gacccatgttgctctatgatttgagtgagtttgtggctgttaggtgaatggaattga 4924571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 4646575 - 4646524
Alignment:
Q  19 cttctgattagagaaatttttctagaaatccaatcaataaaggatatattatt 71  Q
    |||||||||||||||||||| | ||| |||||||||| |||||||||||||||    
T  4646575 cttctgattagagaaattttcc-agacatccaatcaaaaaaggatatattatt 4646524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 4874038 - 4874085
Alignment:
Q  139 taggtccttcatcattgactgtgggtgtgaccttatattgaaaaagtc 186  Q
    ||||||||||||||| |||||| |||||||||||||| | ||||||||    
T  4874038 taggtccttcatcatcgactgtaggtgtgaccttatactaaaaaagtc 4874085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 290
Target Start/End: Original strand, 4874084 - 4874147
Alignment:
Q  229 tcctaatagggctaattgaaaccgagatgaggtacat--gattcagattctttattgattgatt 290  Q
    ||||||||| | |||||||||||||||||||||| ||  |||| | |||||| |||||||||||    
T  4874084 tcctaatagagataattgaaaccgagatgaggtagatcggatttaaattcttcattgattgatt 4874147  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 174 - 255
Target Start/End: Complemental strand, 9112652 - 9112571
Alignment:
Q  174 tattgaaaaagtcacacatatattcttttctttttattaccagccatgattaatttcctaatagggctaattgaaaccgaga 255  Q
    ||||||||||||||| |||| |   |||||||||||||| ||| | |||||||||||||||||||||||||||||| |||||    
T  9112652 tattgaaaaagtcacgcatagaggtttttctttttattaacaggcttgattaatttcctaatagggctaattgaaatcgaga 9112571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 9129922 - 9129862
Alignment:
Q  129 agtagccaagtaggtccttcatcattgactgtgggtgtgaccttatattgaaaaagtcaca 189  Q
    ||||| || |||||||||||||||| || ||||||| | ||||||||| ||||||||||||    
T  9129922 agtagacatgtaggtccttcatcatcgagtgtgggtataaccttatatggaaaaagtcaca 9129862  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 170 - 253
Target Start/End: Complemental strand, 32270294 - 32270211
Alignment:
Q  170 cttatattgaaaaagtcacacatatattcttttctttttattaccagccatgattaatttcctaatagggctaattgaaaccga 253  Q
    ||||||||||||||||||||||||| ||  || ||||||| |||| | | |||||||||| ||||||||||| |||||||||||    
T  32270294 cttatattgaaaaagtcacacatatctttcttcctttttactaccggacttgattaattttctaatagggctgattgaaaccga 32270211  T

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