View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16455_low_1 (Length: 515)
Name: NF16455_low_1
Description: NF16455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16455_low_1 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 7e-78; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 273 - 515
Target Start/End: Original strand, 23938786 - 23939029
Alignment:
| Q |
273 |
taatacgcaactgtgaaattctcttgagcttccttcagacacttcaaaattcttcacagccaaattgcttaacaggagcaagaagctgctgccacaaact |
372 |
Q |
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| T |
23938786 |
taatacgcaattgtgaaattctcttgagcttccttcagacacatcaaaattcttcacaaccaaattgcttaacattagcaagaatctgctgccacaaact |
23938885 |
T |
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| Q |
373 |
caactttc-gtagtggacaaagtcacaatcgattgcttcttaagtgaccatgatattgctccattgcctatcataagcacaaaacttgatatactctttc |
471 |
Q |
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| T |
23938886 |
aaaacttctgcagtggacaaagtcacaattgactgcttcttaaatgaccatgatattgctccattgcctataataaacacataacttgatgtactctttc |
23938985 |
T |
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| Q |
472 |
tatcatatgtatctccaacataatcaaagtttgaccatcctgtt |
515 |
Q |
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| T |
23938986 |
tgtcatctatatctccagcataatcaaagtttgaccatcatgtt |
23939029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 34 - 245
Target Start/End: Original strand, 23937632 - 23937846
Alignment:
| Q |
34 |
taaccaataccagctggtcccataggtatagggtaagcataagtgtggaaatttggctcaacatgaacaaggaacaccattccctcgt---tttcagatg |
130 |
Q |
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| T |
23937632 |
taaccaacaccagctggtcccataggtatagggtatgcataagtgtgaaaatttggctcaacatgaacaagaaacactatcccctcctcattttcagatg |
23937731 |
T |
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| Q |
131 |
atgttccttccatagtattagtagtcataatgttgaagagattatcaagggcccacttaagagcatacaagcttccatcactctcatctattgccaccat |
230 |
Q |
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| T |
23937732 |
ttgttccattcatagtatcagtagccataatgttgaagaggttatcaagggcccacttaagagcatacaagcttccatcactctcatctattgccaccat |
23937831 |
T |
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| Q |
231 |
aaccttcatcttcat |
245 |
Q |
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| T |
23937832 |
caccttcatcttcat |
23937846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 71 - 258
Target Start/End: Original strand, 23931955 - 23932136
Alignment:
| Q |
71 |
cataagtgtggaaatttggctcaacatgaacaaggaacaccattccctcgttttcagatgatgttccttccatagtattagtagtcataatgttgaagag |
170 |
Q |
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| T |
23931955 |
cataattgtggaaaatgggttcaacatgaacaagaaacaccattccctcattttcagatgatgttccttccatggta------gtcataacgttgaagag |
23932048 |
T |
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| Q |
171 |
attatcaagggcccacttaagagcatacaagcttccatcactctcatctattgccaccataaccttcatcttcatccttctcttttct |
258 |
Q |
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| T |
23932049 |
attatcaagggcccacttaagggcataaaagcttccatcactttcatctattgccaccataaccttcatcttcatccttctctcttct |
23932136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 445
Target Start/End: Complemental strand, 2083814 - 2083699
Alignment:
| Q |
330 |
agccaaattgcttaacaggagcaagaagctgctgccacaaactcaactttcgtagtggacaaagtcacaatcgattgcttcttaagtgaccatgatattg |
429 |
Q |
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| T |
2083814 |
agccaaattccttgacaagagcacaaaactgctacaacatactcaacttcagtagtagaaaaagtaacaattggttgcttcttagatgaccaagatattg |
2083715 |
T |
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| Q |
430 |
ctccattgcctatcat |
445 |
Q |
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| T |
2083714 |
ctccatttcctatcat |
2083699 |
T |
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