View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16455_low_6 (Length: 290)
Name: NF16455_low_6
Description: NF16455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16455_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 6 - 264
Target Start/End: Complemental strand, 10863995 - 10863737
Alignment:
| Q |
6 |
agattggtagagacagacgaagatgcatatggttggatccttaatacttcaagtatgatggttgtagcagtggaagtgggcatgttgctatggtggctac |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10863995 |
agattagtagagacagacgaagatgcatatggttggatccttaatacttcaagtatgatggttgtagcggtggaagtgggcatgttgctatggtggctac |
10863896 |
T |
|
| Q |
106 |
aagttagatttatgccttaaatattttaaaataggcatttcaaagtctaactcgatcaagtctattcccaccttactcgttgttcttccacttcttttaa |
205 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10863895 |
aagttagacttatgccttaaatattttaacataggcatttcaaaatctaactcgatcaagtctattcccaccttactcattgttcttccacttcttttaa |
10863796 |
T |
|
| Q |
206 |
tttatttttcttatttcattattgaatgatgattttataaagtaacttgtagttttcat |
264 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10863795 |
tttatttttcttataccatcattgaatgatgattttataaagtaacttgtagttttcat |
10863737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 1501187 - 1501239
Alignment:
| Q |
201 |
tttaatttatttttcttatttcattattgaatgatgattttataaagtaactt |
253 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||| |||| |||||| |
|
|
| T |
1501187 |
tttaatttatttttctcatatcattattgaatgatgattttgtaaaataactt |
1501239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University