View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16455_low_9 (Length: 210)
Name: NF16455_low_9
Description: NF16455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16455_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 37348133 - 37347949
Alignment:
| Q |
8 |
ggaggagcagagaagggaatttgtttaacttggaaggatttatgggtgactgtttctgcttcaacaggaaaaaccaatgaaagcaaatcaattcttcagg |
107 |
Q |
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| T |
37348133 |
ggaggagaagagaagggagtttgtttaacttggaaggatttatgggtgactgtttctgcttcaacaggaaaaaccaatgaaagcaaatcaattcttcagg |
37348034 |
T |
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| Q |
108 |
gtctgactggttatgcaaaaccagctcagcttttggctattatgggtccttctggttgtggaaaatctacacttcttgatgcttt |
192 |
Q |
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| T |
37348033 |
gtctaactggttatgcaaaaccagctcagcttttggctattatgggtccttctggttgtggaaaatctacacttcttgatgcttt |
37347949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 37290232 - 37290288
Alignment:
| Q |
136 |
gcttttggctattatgggtccttctggttgtggaaaatctacacttcttgatgcttt |
192 |
Q |
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| T |
37290232 |
gcttttggctattatgggtccatctggctctggaaaatccacacttcttgatgcttt |
37290288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 187
Target Start/End: Original strand, 37315410 - 37315514
Alignment:
| Q |
83 |
aatgaaagcaaatcaattcttcagggtctgactggttatgcaaaaccagctcagcttttggctattatgggtccttctggttgtggaaaatctacacttc |
182 |
Q |
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| T |
37315410 |
aatggaagcaaatcaattcttcaaggattaactggttatgctaaacctggtcaactcttggccataatgggtccttctggctgtggcaagtctacactac |
37315509 |
T |
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| Q |
183 |
ttgat |
187 |
Q |
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| T |
37315510 |
ttgat |
37315514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 187
Target Start/End: Original strand, 37326963 - 37327067
Alignment:
| Q |
83 |
aatgaaagcaaatcaattcttcagggtctgactggttatgcaaaaccagctcagcttttggctattatgggtccttctggttgtggaaaatctacacttc |
182 |
Q |
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| T |
37326963 |
aatggaagcaaatcaattcttcaaggattaactggttatgctaaacctggtcaactcttggccataatgggtccttctggctgtggcaagtctacactac |
37327062 |
T |
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| Q |
183 |
ttgat |
187 |
Q |
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| T |
37327063 |
ttgat |
37327067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 29476610 - 29476661
Alignment:
| Q |
141 |
tggctattatgggtccttctggttgtggaaaatctacacttcttgatgcttt |
192 |
Q |
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| T |
29476610 |
tggctattatgggtccatctggttctggaaaatctactcttcttgatgcttt |
29476661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 192
Target Start/End: Complemental strand, 19554367 - 19554258
Alignment:
| Q |
83 |
aatgaaagcaaatcaattcttcagggtctgactggttatgcaaaaccagctcagcttttggctattatgggtccttctggttgtggaaaatctacacttc |
182 |
Q |
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| T |
19554367 |
aatggaagcagatcaattcttcacggactaacaggttatgttaagccaggtcaacttttggccataatgggcccttctggctgtggcaagtctacactac |
19554268 |
T |
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| Q |
183 |
ttgatgcttt |
192 |
Q |
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||||| |||| |
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| T |
19554267 |
ttgatacttt |
19554258 |
T |
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