View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16456_low_1 (Length: 528)
Name: NF16456_low_1
Description: NF16456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16456_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 42800737 - 42800377
Alignment:
| Q |
1 |
aagaagagggaataatggcaatggctacaatgagagagatgccaaggagccctgaagccaaacttgggaggagagttgaagatctatgggatgttcaaga |
100 |
Q |
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| T |
42800737 |
aagaagagggagtaatggcaatggctacaatgagagagatgccaaggagccctgaagccaaacttgggatgagagttgaagatctatgggatgttcaaga |
42800638 |
T |
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| Q |
101 |
ggcacaattaagtcctaatgacaaacttaatgcttgttttgaaagcatacctgtttctgcttttcctttgcctgctaaaaaccaaggtagtttagtgtct |
200 |
Q |
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| T |
42800637 |
ggcacaattaagtcctaatgacaaacttaatgcttgttttgaaagcatacctgtttctgcttttcctttgcctgctaaaaaccaaggtagtttagtgtct |
42800538 |
T |
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| Q |
201 |
atgtatgtatgtgtctgattttgattgaatnnnnnnnnnngtgattttgatcacacccagatgaaaatttatgtgcatgtttggtatcacgatagtatat |
300 |
Q |
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| T |
42800537 |
atgtatgtatgtgtctgattttgattgaataaaagaaaaagtgattttgatcacacccagatgaaaatttatgtgcatgtttggtatcacgatagtatat |
42800438 |
T |
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| Q |
301 |
cagaatcatggtggttcaccgtgattctgacaaaccaaccaactatggtaccaaacatgca |
361 |
Q |
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| T |
42800437 |
cagaatcatggtggttcaccgtgattctgacaaaccaaccaactatggtaccaaacatgca |
42800377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 435 - 513
Target Start/End: Complemental strand, 42800303 - 42800225
Alignment:
| Q |
435 |
ctaaaagtgtgaattttatgtttgcttgtatagaaattgaaataaaatcagatgctaccttggctgaagctgtgaaaat |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42800303 |
ctaaaagtgtgaattttatgtttgcttgtatagaaattgaaataaaatcagatgctaccttggctgaagctgtgaaaat |
42800225 |
T |
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