View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16456_low_2 (Length: 440)

Name: NF16456_low_2
Description: NF16456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16456_low_2
NF16456_low_2
[»] chr6 (4 HSPs)
chr6 (21-424)||(30983728-30984131)
chr6 (21-424)||(30989892-30990295)
chr6 (42-424)||(31009613-31009995)
chr6 (59-413)||(30941843-30942197)


Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 21 - 424
Target Start/End: Complemental strand, 30984131 - 30983728
Alignment:
Q  21 accgggatcatccggcaaaactatagttgttaaatttgggcggcaaaatccacaatcaccgtaagattgttgattaggacatagacacaaaaccacattc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30984131 accgggatcatccggcaaaactatagttgttaaatttgggcggcaaaatccgcaatcaccgtatgattgttgattaggacatagacacaaaaccacattc 30984032  T
Q  121 tcagttgtattatatccacatctccctccagatttcatgcaaccatcacatatgtcttcttcgacgccactccacttaacctcaaatccttcgtctaaaa 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30984031 tcagttgtattatatccacatctccctccagatttcatgcaaccatcacatatgtcttcttccacgccactccacttaacctcaaatccttcgtctaaaa 30983932  T
Q  221 catttgccacagaatccgagtcttctaggaaggaactgtttaggccaggaattgtaatattattcttacaccccaaatcaatgaaatcagccactttagc 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30983931 catttgccacagaatccgagtcttctaggaaggaactgtttaggccaggaattgtaatattattcttacaccccaaatcaatgaaatcagccactttcgc 30983832  T
Q  321 acttgaaactacgtatgcatcacgaggttcatcctctacgaggcaagaaatcgtttgagaaacttctgaacccaaagaagacgagtatggatcgagaaga 420  Q
    ||| || | || ||||||||||||||||| |||||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||| |||||    
T  30983831 actcgacattaagtatgcatcacgaggtttatcctctatgaggcaagaaataaattgagaaacttctgaacccaaagaagacgagtatggatcgggaaga 30983732  T
Q  421 gaac 424  Q
    ||||    
T  30983731 gaac 30983728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 21 - 424
Target Start/End: Complemental strand, 30990295 - 30989892
Alignment:
Q  21 accgggatcatccggcaaaactatagttgttaaatttgggcggcaaaatccacaatcaccgtaagattgttgattaggacatagacacaaaaccacattc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30990295 accgggatcatccggcaaaactatagttgttaaatttgggcggcaaaatccgcaatcaccgtatgattgttgattaggacatagacacaaaaccacattc 30990196  T
Q  121 tcagttgtattatatccacatctccctccagatttcatgcaaccatcacatatgtcttcttcgacgccactccacttaacctcaaatccttcgtctaaaa 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30990195 tcagttgtattatatccacatctccctccagatttcatgcaaccatcacatatgtcttcttccacgccactccacttaacctcaaatccttcgtctaaaa 30990096  T
Q  221 catttgccacagaatccgagtcttctaggaaggaactgtttaggccaggaattgtaatattattcttacaccccaaatcaatgaaatcagccactttagc 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30990095 catttgccacagaatccgagtcttctaggaaggaactgtttaggccaggaattgtaatattattcttacaccccaaatcaatgaaatcagccactttcgc 30989996  T
Q  321 acttgaaactacgtatgcatcacgaggttcatcctctacgaggcaagaaatcgtttgagaaacttctgaacccaaagaagacgagtatggatcgagaaga 420  Q
    ||| || | || ||||||||||||||||| |||||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||| |||||    
T  30989995 actcgacattaagtatgcatcacgaggtttatcctctatgaggcaagaaataaattgagaaacttctgaacccaaagaagacgagtatggatcgggaaga 30989896  T
Q  421 gaac 424  Q
    ||||    
T  30989895 gaac 30989892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 42 - 424
Target Start/End: Complemental strand, 31009995 - 31009613
Alignment:
Q  42 tatagttgttaaatttgggcggcaaaatccacaatcaccgtaagattgttgattaggacatagacacaaaaccacattctcagttgtattatatccacat 141  Q
    |||||||||| |||| |||| ||||||||| |||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31009995 tatagttgttgaattggggctgcaaaatccgcaataaccagaagattgttgattaggacatagacacaaaaccacattctcagttgtattatatccacat 31009896  T
Q  142 ctccctccagatttcatgcaaccatcacatatgtcttcttcgacgccactccacttaacctcaaatccttcgtctaaaacatttgccacagaatccgagt 241  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |  ||  |||| ||||    
T  31009895 ctccctccggatttcatgcaaccatcacatatgtcttcttccacgccactccacttaacctcaaatccttggtctaaaacattcgttaccaaatctgagt 31009796  T
Q  242 cttctaggaaggaactgtttaggccaggaattgtaatattattcttacaccccaaatcaatgaaatcagccactttagcacttgaaactacgtatgcatc 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||| |||||||| ||||||||||||||    
T  31009795 cttctaggaaggaactgtttaggccaggaattgtaatattattcttacatcccaaagaaatgaaatcagccacttttgcacttgagactacgtatgcatc 31009696  T
Q  342 acgaggttcatcctctacgaggcaagaaatcgtttgagaaacttctgaacccaaagaagacgagtatggatcgagaagagaac 424  Q
    |||||||| | | |||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31009695 acgaggtttaccatctatgaggcaagaaataaattgagaaacttctgaacccaaagaagacgagtatggatcgggaagagaac 31009613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 59 - 413
Target Start/End: Complemental strand, 30942197 - 30941843
Alignment:
Q  59 ggcggcaaaatccacaatcaccgtaagattgttgattaggacatagacacaaaaccacattctcagttgtattatatccacatctccctccagatttcat 158  Q
    |||||||||| || |||||||| ||||| | |||||||||||| | |||||||||  ||||||||| || ||| |||||||||||||| |||||||| ||    
T  30942197 ggcggcaaaacccgcaatcaccataagactcttgattaggacacatacacaaaactgcattctcagatgcattgtatccacatctcccaccagattttat 30942098  T
Q  159 gcaaccatcacatatgtcttcttcgacgccactccacttaacctcaaatccttcgtctaaaacatttgccacagaatccgagtcttctaggaaggaactg 258  Q
    |||||||||||||||||||||||| |||||||||||| |||| |||||||||| |||||||||||   ||||||||||||||||||||| || ||| ||     
T  30942097 gcaaccatcacatatgtcttcttccacgccactccacctaacatcaaatcctttgtctaaaacatcaaccacagaatccgagtcttctatgatggagctc 30941998  T
Q  259 tttaggccaggaattgtaatattattcttacaccccaaatcaatgaaatcagccactttagcacttgaaactacgtatgcatcacgaggttcatcctcta 358  Q
    ||||||||||| ||||||||||||||| |||| |||||| |||| |||||| |||||||||||||||| || | |||||||| |||||||| | ||||||    
T  30941997 tttaggccaggtattgtaatattattcatacatcccaaaccaataaaatcaaccactttagcacttgacaccaagtatgcattacgaggtttaccctcta 30941898  T
Q  359 cgaggcaagaaatcgtttgagaaacttctgaacccaaagaagacgagtatggatc 413  Q
     |||||||||||||  ||||||||||||||||| |||||||||||||||||||||    
T  30941897 tgaggcaagaaatcacttgagaaacttctgaactcaaagaagacgagtatggatc 30941843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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