View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16456_low_5 (Length: 277)
Name: NF16456_low_5
Description: NF16456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16456_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 260
Target Start/End: Complemental strand, 48645876 - 48645637
Alignment:
| Q |
21 |
ttctacttcaagtggaaataatgataataagaacaagaagtacaaaggtgtgagattgagaaagtggggaaaatgggtatctgaaataaggctaccaaat |
120 |
Q |
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| T |
48645876 |
ttctacctcaagtggaaataatgataataagaacaagaagtacaaaggtgtgagattgagaaagtggggaaaatgggtatctgaaataaggctaccaaat |
48645777 |
T |
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| Q |
121 |
agtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagcatttgatgctgcactttattgtcttcgcggtcgtcatgcaaatt |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48645776 |
agtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagcatttgatgctgcactttattgtcttcgtggtcgtcatgcaaatt |
48645677 |
T |
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| Q |
221 |
tcaatttccttgatacacctctcaatttggatatcaatgc |
260 |
Q |
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| T |
48645676 |
tcaatttccttgatacacctctcaatttggatatcaatgc |
48645637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 21 - 260
Target Start/End: Complemental strand, 48654292 - 48654050
Alignment:
| Q |
21 |
ttctacttcaagtggaaataatgataataaga---acaagaagtacaaaggtgtgagattgagaaagtggggaaaatgggtatctgaaataaggctacca |
117 |
Q |
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| T |
48654292 |
ttctacttcaagtggaaataatgataataagactgagaagaagtacaaaggtgtgagattgagaaagtggggaaaatgggtatctgaaataaggctacca |
48654193 |
T |
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| Q |
118 |
aatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagcatttgatgctgcactttattgtcttcgcggtcgtcatgcaa |
217 |
Q |
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| T |
48654192 |
aatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagcatttgatgctgcactttattgtcttcgtggtcgtcatgcaa |
48654093 |
T |
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| Q |
218 |
atttcaatttccttgatacacctctcaatttggatatcaatgc |
260 |
Q |
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| T |
48654092 |
atttcaatttccttgatacacctctcaatttggatatcaatgc |
48654050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 78 - 240
Target Start/End: Original strand, 3573750 - 3573912
Alignment:
| Q |
78 |
gagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagca |
177 |
Q |
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| T |
3573750 |
gagaaaatggggaaaatgggtatctgaaattaggcttccaaatagtcgtgagagaatatggttaggatcatatgacacacaagaaaaagcagctagggca |
3573849 |
T |
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| Q |
178 |
tttgatgctgcactttattgtcttcgcggtcgtcatgcaaatttcaatttccttgatacacct |
240 |
Q |
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| T |
3573850 |
tttgatgcagccctatattgtctacgtggtcctcatgcaagtttcaatttccctaatacacct |
3573912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 78 - 242
Target Start/End: Original strand, 3551332 - 3551496
Alignment:
| Q |
78 |
gagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagca |
177 |
Q |
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|||||| |||||||||||||||||||| || ||||| ||||||||| | || ||||||||||||||||||||||| || ||||||||||| | |||| |
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| T |
3551332 |
gagaaattggggaaaatgggtatctgagattaggcttccaaatagtagggagagaatatggttaggatcatatgacacacaagagaaagcagcaagagca |
3551431 |
T |
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| Q |
178 |
tttgatgctgcactttattgtcttcgcggtcgtcatgcaaatttcaatttccttgatacacctct |
242 |
Q |
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| T |
3551432 |
tttgatgcagccctttattgtctacgtggtcctcatgcaagtttcaatttccctaacacacctct |
3551496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 78 - 242
Target Start/End: Original strand, 3589042 - 3589206
Alignment:
| Q |
78 |
gagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagca |
177 |
Q |
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|||||| ||||||||||||||||||||||| ||||| ||||||||| | || ||||||||||||||||||||||| || || |||||||||| ||| |
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| T |
3589042 |
gagaaaatggggaaaatgggtatctgaaattaggcttccaaatagtagggagagaatatggttaggatcatatgacacacaagaaaaagcagctagggca |
3589141 |
T |
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| Q |
178 |
tttgatgctgcactttattgtcttcgcggtcgtcatgcaaatttcaatttccttgatacacctct |
242 |
Q |
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|||||||| || || |||||||| || |||| |||||||| ||||||||||| | | |||||||| |
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| T |
3589142 |
tttgatgcagccctatattgtctacgtggtcctcatgcaagtttcaatttccctaacacacctct |
3589206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 242
Target Start/End: Original strand, 3562483 - 3562670
Alignment:
| Q |
55 |
aagaagtacaaaggtgtgagattgagaaagtggggaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgatt |
154 |
Q |
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|||| ||||||||| ||||| |||||| ||||||||||||||||||||||| ||||| ||||||||| | || ||||||||||||||||||||||| |
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| T |
3562483 |
aagatgtacaaaggggtgaggaagagaaaatggggaaaatgggtatctgaaattaggcttccaaatagtagggagagaatatggttaggatcatatgaca |
3562582 |
T |
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| Q |
155 |
cagctgagaaagcagctaaagcatttgatgctgcactttattgtcttcgcggtcgtcatgcaaatttcaatttccttgatacacctct |
242 |
Q |
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| T |
3562583 |
cacaagaaaaagcagctagggcatttgatgcagccctatattgtctacgtggtcctcatgctagtttcaatttccctaacacacctct |
3562670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 89 - 242
Target Start/End: Original strand, 10025200 - 10025353
Alignment:
| Q |
89 |
gaaaatgggtatctgaaataaggctaccaaatagtcgtgaaagaatatggttaggatcatatgattcagctgagaaagcagctaaagcatttgatgctgc |
188 |
Q |
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||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| |||| || || |||||||||| |||||||||||| || |
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| T |
10025200 |
gaaaatgggtatctgaaattaggcttccaaatagtcgtgagagaatatggttaggatcacatgacacacaagaaaaagcagctagagcatttgatgcagc |
10025299 |
T |
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| Q |
189 |
actttattgtcttcgcggtcgtcatgcaaatttcaatttccttgatacacctct |
242 |
Q |
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|| |||||||| || |||| |||||| | ||||||||||| | |||||||||| |
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| T |
10025300 |
cctatattgtctacgtggtcctcatgctagtttcaatttccctaatacacctct |
10025353 |
T |
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