View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16457_high_1 (Length: 412)

Name: NF16457_high_1
Description: NF16457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16457_high_1
NF16457_high_1
[»] chr7 (1 HSPs)
chr7 (14-160)||(3336114-3336257)
[»] chr2 (3 HSPs)
chr2 (14-111)||(12370058-12370155)
chr2 (329-412)||(12369810-12369892)
chr2 (127-160)||(12370011-12370044)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 6e-41; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 14 - 160
Target Start/End: Complemental strand, 3336257 - 3336114
Alignment:
Q  14 aatatccaaaattgtcccaatgcaaatgcaagctgcacagccaaatcctgtcaaaggcgtttgcttgcttcctccccaattcaagcagtgttatcacann 113  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||      
T  3336257 aatattcaaaattgtcccaatccaaatgcaagctgcacagccaaatcctgtcaaacacgtttgcttgcttcctccccaattcaagcagtgttatcaca-- 3336160  T
Q  114 nnnnnnctctgctttttaacaaaccctaaccctactcctagtcctat 160  Q
          |||| | ||||||||||||||||| ||||||||||||||||    
T  3336159 ttttttctctac-ttttaacaaaccctaactctactcctagtcctat 3336114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 12370155 - 12370058
Alignment:
Q  14 aatatccaaaattgtcccaatgcaaatgcaagctgcacagccaaatcctgtcaaaggcgtttgcttgcttcctccccaattcaagcagtgttatcaca 111  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  12370155 aatatccaaaattgtcccaatccaaatgcaagctgtacagccaaatcctgtcaaacgtgtttgcttgcttcctccccaattcaagcagtgttatcaca 12370058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 329 - 412
Target Start/End: Complemental strand, 12369892 - 12369810
Alignment:
Q  329 ttacagccgtagttacatatatatgtttcatcgctactgttgaattatttggatcccaatccctaccattttccattgccgtat 412  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||    
T  12369892 ttacagccgtagttccatatatatgtttcatcgctattgttgaattatttggat-ccaatccctaccattttcccttgccgtat 12369810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 160
Target Start/End: Complemental strand, 12370044 - 12370011
Alignment:
Q  127 ttttaacaaaccctaaccctactcctagtcctat 160  Q
    ||||||||||||||||||||||||||| ||||||    
T  12370044 ttttaacaaaccctaaccctactcctaatcctat 12370011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University