View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16457_high_2 (Length: 268)
Name: NF16457_high_2
Description: NF16457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16457_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 13749444 - 13749679
Alignment:
| Q |
13 |
agaaatccaacaaatttttagatacttgagctttgtcatctccaaaagcaatttctggtttagaaaattagatacatgtcatacacataattctttaaat |
112 |
Q |
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| T |
13749444 |
agaaatccaagaaaattttagatacttgagctttgtcatctccaaaggcaatttacggtttagaaaattagatatttgtcatacacataattctttaaat |
13749543 |
T |
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| Q |
113 |
ccataagttttcaatagattatgaacatcaaacaaaccagaagttttcaattcaagatccctggaagnnnnnnnatgatgtctaggaacagttttaacaa |
212 |
Q |
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| T |
13749544 |
ccataagttttcaatagattaagaacacccaacaaaccagaagttttcaattcaagatccctggaagttttcttatgatgtctaggaacagttttaacaa |
13749643 |
T |
|
| Q |
213 |
tcaaagtaacaaaagcagcaacaaaagcagcgaaca |
248 |
Q |
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|||||||||||||| || ||||||| ||| |||||| |
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| T |
13749644 |
tcaaagtaacaaaaccatcaacaaaggcatcgaaca |
13749679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 13598823 - 13598790
Alignment:
| Q |
13 |
agaaatccaacaaatttttagatacttgagcttt |
46 |
Q |
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| T |
13598823 |
agaaatccaacaattttttagatacttgagcttt |
13598790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 55 - 244
Target Start/End: Original strand, 56233999 - 56234192
Alignment:
| Q |
55 |
caaaagcaatttctggtttagaaaattagatacatgtcatacacataattctttaaatccataagttttcaatagattatgaacatcaaacaaaccagaa |
154 |
Q |
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| T |
56233999 |
caaaagcaatttctggtttagaaaattaaatatatgtcatacacataattctttaaatccataagttttcaatagattatgaacatcaaataaaccagaa |
56234098 |
T |
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| Q |
155 |
gttttcaattcaagatccctggaagnnnnnnnatgatgtctaggaac----agttttaacaatcaaagtaacaaaagcagcaacaaaagcagcg |
244 |
Q |
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| T |
56234099 |
gttctcaattcaagatcactggaagttttcttatgatgtctaggaacagttagttttaacaatcaaagtaacaaaacgagcaacaaaagcagcg |
56234192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 10570059 - 10570120
Alignment:
| Q |
187 |
atgatgtctaggaacagttttaacaatcaaagtaacaaaagcagcaacaaaagcagcgaaca |
248 |
Q |
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| T |
10570059 |
atgatgtctaggaacagttttaacaatcaaagtaacaaaaccagcaacaaaagcagcaaaca |
10570120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 37610322 - 37610289
Alignment:
| Q |
13 |
agaaatccaacaaatttttagatacttgagcttt |
46 |
Q |
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||||||||||||| |||||||||||||||||||| |
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| T |
37610322 |
agaaatccaacaattttttagatacttgagcttt |
37610289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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