View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16458_high_9 (Length: 278)

Name: NF16458_high_9
Description: NF16458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16458_high_9
NF16458_high_9
[»] chr4 (3 HSPs)
chr4 (1-263)||(31974639-31974901)
chr4 (1-123)||(31909968-31910089)
chr4 (153-263)||(31910382-31910495)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 31974639 - 31974901
Alignment:
Q  1 ataaaaagagtgaatgacttcagttgagaaaaattataattaagagagactggactaaacattttcgtcatagtactgaannnnnnncaacaaatcttga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||       |||||||||||||    
T  31974639 ataaaaagagtgaatgacttcagttgagaaaaattataattaagagagacgggactaaacattttcgtcatagtactgaatttttttcaacaaatcttga 31974738  T
Q  101 ttcttcattagttagcttctgccctagtgcatggtggatcatggattctttcttggtttacacaactttgctgacctttagatgatctaaataaagatgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31974739 ttcttcattagttagcttctgccctagtgcatggtggatcatggattctttcttggtttacacaactttgctgacctttagatgatctaaataaagatgg 31974838  T
Q  201 tattgtaattgtgttctacagttttgttttgtttctactcaagtaaagtctaaacaatgtttt 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31974839 tattgtaattgtgttctacagttttgttttgtttctactcaagtaaagtctaaacaatgtttt 31974901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 31909968 - 31910089
Alignment:
Q  1 ataaaaagagtgaatgacttcagttgagaaaaattataattaagagagactggactaaacattttcgtcatagtactgaannnnnnncaacaaatcttga 100  Q
    |||||||||||||| ||||||||||||| |||||||||||| ||||||| ||||||||| |||||| |||||||||||||       |||||||||||||    
T  31909968 ataaaaagagtgaacgacttcagttgaggaaaattataattgagagagattggactaaatattttcatcatagtactgaa-ttttttcaacaaatcttga 31910066  T
Q  101 ttcttcattagttagcttctgcc 123  Q
    |||||||||||||||||||||||    
T  31910067 ttcttcattagttagcttctgcc 31910089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 153 - 263
Target Start/End: Original strand, 31910382 - 31910495
Alignment:
Q  153 ttggtttacacaactttgctgacctttagat--gatctaaata-aagatggtattgtaattgtgttctacagttttgttttgtttctactcaagtaaagt 249  Q
    ||||||||||||||||||||| | |||||||  |||||||||  |||||||||| |||| |||||||||||||||||||||||||||||||||||||| |    
T  31910382 ttggtttacacaactttgctggcttttagatatgatctaaatcgaagatggtatcgtaactgtgttctacagttttgttttgtttctactcaagtaaaat 31910481  T
Q  250 ctaaacaatgtttt 263  Q
    ||||| | ||||||    
T  31910482 ctaaagagtgtttt 31910495  T

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