View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16458_low_1 (Length: 586)
Name: NF16458_low_1
Description: NF16458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16458_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 3 - 570
Target Start/End: Complemental strand, 35762380 - 35761810
Alignment:
| Q |
3 |
gagcagagaagtaacctagtcatattaaccatggctatggtggataaaaacactacaatgtattaccaatttggtgtaggaaacaagtaatatagatgct |
102 |
Q |
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| T |
35762380 |
gagcagagaagtaacctagtcatattaaccatggctatggtggataaaaacactacaatgtattaccaatttggtgtaggaaacaagtaatatagattct |
35762281 |
T |
|
| Q |
103 |
ttgannnnnnnaaccatgtagtctttgattcgttatcggttgatgcgtatagaaaaatatatgagatatgtaaatattattcaatcccaaattaatggat |
202 |
Q |
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| T |
35762280 |
ttgatttttttaaccatgtagtctttgattcgttattggctgatgcgtatagaaaaatatatgagatatgtaaatattattcaatcccaaattaatggat |
35762181 |
T |
|
| Q |
203 |
ttgatgaagatgatacaacaaaatgtgggtttattccaagttaaactgataaacaaaaacccaaatatttagagaaaatgattgggtgatattaaattag |
302 |
Q |
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| T |
35762180 |
ttgatgaagatgatacaacaaaatgtgggtttattccaagttaaaccgataaacaaaaacccaaatatttagagaaaataattgggtgatattaaattag |
35762081 |
T |
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| Q |
303 |
aaagccctatacttggttgcttgctaacttaa---nnnnnnnnnnnctttcaaagaataattaataaacaaacatatttgagttaaagtgtccatggttg |
399 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35762080 |
aaagccctatacttggttgcttgctaacttaattttttttttctttctttcaaagaataattaataaacaaacatatttgagttaaagtgtccatggttg |
35761981 |
T |
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| Q |
400 |
atgaactaaattgtgatccatattattcagtgtttccccttgaggagcttacgctcttcctctaactccaacaagttcataatcactgcttccgaagcat |
499 |
Q |
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| T |
35761980 |
atgaactaaattgtgatccatattattcagtgtttccccttgaggagcttacgctcttcctctaactccaacaagttcataatcactgcttccgaagcat |
35761881 |
T |
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| Q |
500 |
cttttaacaacaccgaccagtccctattggaagaatcaaaggttaatccaacagtgaatttagcttcctct |
570 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35761880 |
cttttaacaacaccgaccagtccctattggaagaatcaaaggttaatccaacagtgaatttagcttcctct |
35761810 |
T |
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