View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16458_low_10 (Length: 278)
Name: NF16458_low_10
Description: NF16458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16458_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 31974639 - 31974901
Alignment:
| Q |
1 |
ataaaaagagtgaatgacttcagttgagaaaaattataattaagagagactggactaaacattttcgtcatagtactgaannnnnnncaacaaatcttga |
100 |
Q |
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| T |
31974639 |
ataaaaagagtgaatgacttcagttgagaaaaattataattaagagagacgggactaaacattttcgtcatagtactgaatttttttcaacaaatcttga |
31974738 |
T |
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| Q |
101 |
ttcttcattagttagcttctgccctagtgcatggtggatcatggattctttcttggtttacacaactttgctgacctttagatgatctaaataaagatgg |
200 |
Q |
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| T |
31974739 |
ttcttcattagttagcttctgccctagtgcatggtggatcatggattctttcttggtttacacaactttgctgacctttagatgatctaaataaagatgg |
31974838 |
T |
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| Q |
201 |
tattgtaattgtgttctacagttttgttttgtttctactcaagtaaagtctaaacaatgtttt |
263 |
Q |
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| T |
31974839 |
tattgtaattgtgttctacagttttgttttgtttctactcaagtaaagtctaaacaatgtttt |
31974901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 31909968 - 31910089
Alignment:
| Q |
1 |
ataaaaagagtgaatgacttcagttgagaaaaattataattaagagagactggactaaacattttcgtcatagtactgaannnnnnncaacaaatcttga |
100 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||| ||||||| ||||||||| |||||| ||||||||||||| ||||||||||||| |
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| T |
31909968 |
ataaaaagagtgaacgacttcagttgaggaaaattataattgagagagattggactaaatattttcatcatagtactgaa-ttttttcaacaaatcttga |
31910066 |
T |
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| Q |
101 |
ttcttcattagttagcttctgcc |
123 |
Q |
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| T |
31910067 |
ttcttcattagttagcttctgcc |
31910089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 153 - 263
Target Start/End: Original strand, 31910382 - 31910495
Alignment:
| Q |
153 |
ttggtttacacaactttgctgacctttagat--gatctaaata-aagatggtattgtaattgtgttctacagttttgttttgtttctactcaagtaaagt |
249 |
Q |
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| T |
31910382 |
ttggtttacacaactttgctggcttttagatatgatctaaatcgaagatggtatcgtaactgtgttctacagttttgttttgtttctactcaagtaaaat |
31910481 |
T |
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| Q |
250 |
ctaaacaatgtttt |
263 |
Q |
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||||| | |||||| |
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| T |
31910482 |
ctaaagagtgtttt |
31910495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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