View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16458_low_2 (Length: 563)
Name: NF16458_low_2
Description: NF16458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16458_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 539
Target Start/End: Complemental strand, 36676192 - 36675671
Alignment:
| Q |
18 |
gataaatctttgaccggggaaggacttgaaaatgaagtttgtactctcattaagattgcctgtgagtgtgttcacccttttccagaccaaaggccaacaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676192 |
gataaatctttgaccggggaaggacttgaaaatgaagtttgtactctcattaagattgcctgtgagtgtgttcacccttttccagaccaaaggccaacaa |
36676093 |
T |
|
| Q |
118 |
tgcttgaagtttacaacaatatgaggaacgttaggaagggaccaaatggttctggtgatgattctgacccattaaggggattagaatatgcttcttctat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36676092 |
tgcttgaagtttacaacaatatgaggaacgttaggaagggaccaaatggttctggtgatgattctgacacattaaggggattagaatatgcttcttctat |
36675993 |
T |
|
| Q |
218 |
tcctatggacgaaattgtcgagttttaaataattagatcgggtttatgtcggaaaaaagtaatgttagtctcagtaacattgtgataaaaagttgtaatg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36675992 |
tcctatggacgaaattgtcgagttttaaataattagatcgggtttatgtctgaaaaaagtaatgttagtctcagtaacattgtgataaaaagttgtaatg |
36675893 |
T |
|
| Q |
318 |
ctctcctgataatnnnnnnntaagcctgttattggtcaaatatatgtataatatgtctcccccacatatattaaaaaagtgaacatgaactccattttcc |
417 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36675892 |
ctctcctgataat-aaaaaataagcctgttattggtcaaatatatgtataatatgtctcccccacatatattaaaaaattgaacatgaactccattttcc |
36675794 |
T |
|
| Q |
418 |
tctccatcctctacatctccctcatacttgtactttttctctatta-ttttccctcgattttaacannnnnnncttctcctctatgaactctcttacttt |
516 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
36675793 |
tctccatcctctacatctccctcatacttgtactttttctctattatttttcccttgattttaacatttttttcttctcctctatgaactctcttacttt |
36675694 |
T |
|
| Q |
517 |
tccctcaattttaacattttctt |
539 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
36675693 |
tccctcaattttaacattttctt |
36675671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 36673437 - 36673200
Alignment:
| Q |
18 |
gataaatctttgaccggggaaggacttgaaaatgaagtttgtactctcattaagattgcctgtgagtgtgttcacccttttccagaccaaaggccaacaa |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36673437 |
gataaatctttgaccggggaaggacttgaaaatgaagtttgtactctcattaagattgcctgtgagtgtgttcacccttttccagaccaaaggccaacaa |
36673338 |
T |
|
| Q |
118 |
tgcttgaagtttacaacaatatgaggaacgttaggaagggaccaaatggttctggtgatgattctgacccattaaggggattagaatatgcttcttctat |
217 |
Q |
| |
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||||||||||||||||||||||||| || || |||||||||| |||| | |||| | || |||||||| |||||||||||||||||||||| |||| || |
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| T |
36673337 |
tgcttgaagtttacaacaatatgagcaatgtaaggaagggacaaaatagctctgttaataattctgacagattaaggggattagaatatgctacttcaat |
36673238 |
T |
|
| Q |
218 |
tcctatggacgaaattgtcgagttttaaataattagatc |
256 |
Q |
| |
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| |||| ||||||||||| ||| |||||||||| ||||| |
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| T |
36673237 |
tactatagacgaaattgttgag-tttaaataataagatc |
36673200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 36695721 - 36695531
Alignment:
| Q |
18 |
gataaatctttgaccggggaaggacttgaaaatgaagtttgtactctcattaagattgcctgtgagtgtgttcacccttttccagaccaaaggccaacaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36695721 |
gataaatctttgaccggggaaggacttgaaaatgaagtttgtactctcattaagattgcctgtgagtgtgttcacccttttccagaccaaaggtcaacaa |
36695622 |
T |
|
| Q |
118 |
tgcttgaagtttacaacaatatgaggaacgttaggaagggaccaaatggttctggtgatgattctgacccattaaggggattagaatatgc |
208 |
Q |
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||||||||||||||||||||||||| || | |||||| ||||||||||| |||||||||||||||| ||||||||||||| |||||||| |
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|
| T |
36695621 |
tgcttgaagtttacaacaatatgagcaatgacaggaagccaccaaatggttatggtgatgattctgacacattaaggggatttgaatatgc |
36695531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 36683865 - 36683744
Alignment:
| Q |
18 |
gataaatctttgaccggggaaggacttgaaaatgaagtttgtactctcattaagattgcctgtgagtgtgttcacccttttccagaccaaaggccaacaa |
117 |
Q |
| |
|
||||||||| || | ||| ||||| ||||||||| ||| ||| ||||| | |||||||| |||||||||||| | ||| | | ||||||| ||||||| |
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|
| T |
36683865 |
gataaatctctgcctgggcaaggatttgaaaatggagtatgtgctctcctaaagattgcatgtgagtgtgttaaacctat---aaaccaaagaccaacaa |
36683769 |
T |
|
| Q |
118 |
tgcttgaagtttacaacaatatgag |
142 |
Q |
| |
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|||||||||||||||||||| |||| |
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|
| T |
36683768 |
tgcttgaagtttacaacaatttgag |
36683744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 482
Target Start/End: Complemental strand, 36695471 - 36695354
Alignment:
| Q |
359 |
atatgtataatatgtctcccccac-----atatattaaaaaagtgaacatgaactccattttcctctccatcctctacatctccctcatacttgtacttt |
453 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |
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| T |
36695471 |
atatgtataatacgtctcccccacgccacatatattaaaaaagtgaacatgaact------------ccatcgtctacatctccctcatacttgtaattt |
36695384 |
T |
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| Q |
454 |
ttctctatta-ttttccctcgattttaaca |
482 |
Q |
| |
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||||| ||| ||||||||| ||||||||| |
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| T |
36695383 |
ctctcttttatttttccctcaattttaaca |
36695354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 344 - 401
Target Start/End: Complemental strand, 36673069 - 36673012
Alignment:
| Q |
344 |
tgttattggtcaaatatatgtataatatgtctcccccacatatattaaaaaagtgaac |
401 |
Q |
| |
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|||||||| ||||||||||||||||||| ||||||| |||| |||||| ||| ||||| |
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|
| T |
36673069 |
tgttattgctcaaatatatgtataatatatctccccaacatgtattaagaaaatgaac |
36673012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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