View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16458_low_3 (Length: 402)
Name: NF16458_low_3
Description: NF16458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16458_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 5 - 365
Target Start/End: Original strand, 16102450 - 16102810
Alignment:
| Q |
5 |
ttggatctaatagtgatattttgcggagatttcgagcgtgacacgtcatattaggcaacaaaagcttaagggatgtggtaaaccaaatttttgcaagaaa |
104 |
Q |
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| T |
16102450 |
ttggatctaattgtgttactttgcggaggtttcgagcttggcactttagattaggcaacacaagtgtaagggaggtagtaaacaggaccctcacaagaaa |
16102549 |
T |
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| Q |
105 |
tgagttgaatgattatatatagatttttcttagcgtgatggtgaagttatatatggtcattagg-acaacaaatagtaatatcacaaaaggatggatcca |
203 |
Q |
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| T |
16102550 |
tgagttgaatgattatacattgattattcttagcatgatggtgaagttatatttggtcatttgggacactaaagatcaatatcacaaaag-atggatcta |
16102648 |
T |
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| Q |
204 |
gtagataaactattggacactatgcagagtcgtagattagatcatggatcatatatataatccactttccgttagagtatgtttggttctgcaatagttg |
303 |
Q |
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| T |
16102649 |
atagatagattattaggcactatgcagagtcgtagattagatcatggatcatatatataatccactctccgctagagtaattttggttctgcaatagttg |
16102748 |
T |
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| Q |
304 |
gttccagtctggaaattgtttcaaagatagtaaattgtgcttttaatatggtcaagtaggtc |
365 |
Q |
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| T |
16102749 |
gttccattcttgaaattgtttcaaagatagtaaattttgtgtttaatatggttaagtaggtc |
16102810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 248 - 364
Target Start/End: Original strand, 14655964 - 14656080
Alignment:
| Q |
248 |
tggatcatatatataatccactttccgttagagtatgtttggttctgcaatagttggttccagtctggaaattgtttcaaagatagtaaattgtgctttt |
347 |
Q |
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| T |
14655964 |
tggatcatatatataatccactttctgttagagtatttttggttctgcaatatttggttccactctggaaattgtttcaaagatagtaaattgtgctttt |
14656063 |
T |
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| Q |
348 |
aatatggtcaagtaggt |
364 |
Q |
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| T |
14656064 |
aatatggtcaagtaggt |
14656080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 292 - 365
Target Start/End: Original strand, 27004663 - 27004736
Alignment:
| Q |
292 |
ctgcaatagttggttccagtctggaaattgtttcaaagatagtaaattgtgcttttaatatggtcaagtaggtc |
365 |
Q |
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| T |
27004663 |
ctgcaatagttggttccacttttgaaattgtttcaaagatagtaaattgtgcgtttaatatggtcaagtaggtc |
27004736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 30607903 - 30607996
Alignment:
| Q |
104 |
atgagttgaatgattatatatagatttttcttagcgtgatggtgaagttatatatggtcattag-gacaacaaatagtaatatcacaaaaggat |
196 |
Q |
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| T |
30607903 |
atgagtggaatgattatatagtgattattcttaacgtggtagtgaaattatatttggtcatttgagacaagaaatatcaatatcacaaagggat |
30607996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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