View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16458_low_5 (Length: 329)
Name: NF16458_low_5
Description: NF16458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16458_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 128 - 286
Target Start/End: Original strand, 4286173 - 4286331
Alignment:
| Q |
128 |
attcgtctgagaataatatacacctccatagagcattcaagttttttgataaaaatcaatctgggtatattgaacttgaggataattaagtaagctaact |
227 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4286173 |
attcatctgagaatgatatacacctccatagagcattcaagttttttgataaaaatcaatctcggtatattgaacttgaggataattaagtaagctaact |
4286272 |
T |
|
| Q |
228 |
cttcatttaagacaagactctgttatcattcccttggcccatcatggcataaccttagc |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4286273 |
cttcatttaagacaagactctgttatcattcccttggcccatcatggcataaccttagc |
4286331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 4284576 - 4284670
Alignment:
| Q |
17 |
ctgtgcccgcgaaattgtaaagaaacttgttattgggagtagtgctattagtacactctttgttttgnnnnnnngctaatacaccttcttattgttgaaa |
116 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
4284576 |
ctgtgcccgcgaaattgtgaagaaacttgttatttggagtagtgctattagtacactctttttttt-----tttgctaatacaccttcttattgttgaaa |
4284670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 21387211 - 21387149
Alignment:
| Q |
147 |
acacctccatagagcattcaagttttttgataaaaatcaatctgggtatattgaacttgagga |
209 |
Q |
| |
|
||||||||| ||||||||| | |||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
21387211 |
acacctccaaagagcattccaattttttgataaaaacgaatctgggtttattgaacttgagga |
21387149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University