View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16458_low_6 (Length: 291)
Name: NF16458_low_6
Description: NF16458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16458_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 32686353 - 32686614
Alignment:
| Q |
1 |
caagccttgatcaatgatatcaattagtcacaagtagagacagacataagagcatnnnnnnnntatagtaaagataagatgtagttagtgacggtgtata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
32686353 |
caagccttgatcaatgatatcaattagtcacaagtagagacagacataagagcataacaaa--tatagtaaagatgagatgtagttagtgacggtgtata |
32686450 |
T |
|
| Q |
101 |
tgaattaaatccaaaagttatttaatgaatacatgattatttataaaagaagtcacatgaccaattagaaaacttatatgacagtttgttttaatcttta |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32686451 |
tgaattaaatccaaaagttatttaatgaatacatgattatttataaaaaaagtcacatgaccaattagaaaacttatatgacagtttgttttaatcttta |
32686550 |
T |
|
| Q |
201 |
ccattcatgattagactcaacagtcagaatttacttctctcactgtcatgcaaagacattttct |
264 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
32686551 |
ccattcatgattagactcaacagtcagaatttacttctctcactttcatgcaaagacattttct |
32686614 |
T |
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