View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16458_low_8 (Length: 290)
Name: NF16458_low_8
Description: NF16458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16458_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 43107082 - 43107345
Alignment:
| Q |
18 |
atttgaaagaagaaaaacacacacaattgaaatagaataaagtaggtggaaaaacctctagnnnnnnnnagtaataggaaacaaaaaaccctagtcacaa |
117 |
Q |
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| T |
43107082 |
atttgaaagaagaaaaacgcacacaattgaaatagaataaagtaggtggaaaaacctctagttttttttagtaataggaaacaaaaaaccctagtcacaa |
43107181 |
T |
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| Q |
118 |
gaagttacacatataatataataacataaaa-aatactagtttgattcatcacgtacatcatttagtccaataagacattatcttttgatgttgaatatg |
216 |
Q |
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| T |
43107182 |
gaagttacacatataacataataacataaaaaaatactagtttgattcatcacgtacatcatttagtccaataagacattatcttttgatgttgaatatg |
43107281 |
T |
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| Q |
217 |
aattcatcaatttcaccagcttcttccttcttttgttattgtcattcttcaattttgtttcatc |
280 |
Q |
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| T |
43107282 |
gattcatcaatttcaccagcttcttccttcttttgttattgtcattcttcaattttgtttcatc |
43107345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 38186423 - 38186350
Alignment:
| Q |
208 |
ttgaatatgaattcatcaatttcaccagcttcttccttcttttgttattgtcattcttcaattttgtttcatct |
281 |
Q |
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| T |
38186423 |
ttgaacatggattcatcaatttcaccagcttcttccttcttttgttattgtcattcttcaattttgtttcatct |
38186350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 38211934 - 38212007
Alignment:
| Q |
208 |
ttgaatatgaattcatcaatttcaccagcttcttccttcttttgttattgtcattcttcaattttgtttcatct |
281 |
Q |
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| T |
38211934 |
ttgaacatggattcatcaatttcaccagcttcttccttcttttgttattgtcattcttcaattttgtttcatct |
38212007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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