View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16459_high_2 (Length: 687)

Name: NF16459_high_2
Description: NF16459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16459_high_2
NF16459_high_2
[»] chr4 (44 HSPs)
chr4 (533-661)||(7237084-7237211)
chr4 (534-654)||(48871166-48871288)
chr4 (534-654)||(48876470-48876592)
chr4 (534-654)||(48886852-48886974)
chr4 (527-661)||(45371399-45371533)
chr4 (404-488)||(48899528-48899613)
chr4 (404-487)||(49040386-49040469)
chr4 (394-486)||(45365266-45365358)
chr4 (404-469)||(7772964-7773029)
chr4 (395-488)||(45384078-45384170)
chr4 (407-480)||(50667116-50667188)
chr4 (539-625)||(37826333-37826419)
chr4 (560-661)||(7801236-7801336)
chr4 (600-645)||(45365621-45365666)
chr4 (600-661)||(45384291-45384352)
chr4 (414-486)||(37826188-37826260)
chr4 (541-661)||(50669681-50669801)
chr4 (404-486)||(7779124-7779204)
chr4 (395-474)||(45371246-45371325)
chr4 (404-463)||(50674654-50674713)
chr4 (584-661)||(7787093-7787170)
chr4 (407-472)||(7787475-7787540)
chr4 (527-660)||(7790674-7790807)
chr4 (560-661)||(7823568-7823668)
chr4 (404-468)||(7790858-7790922)
chr4 (395-474)||(48853468-48853547)
chr4 (546-617)||(50673453-50673524)
chr4 (556-654)||(48155780-48155878)
chr4 (404-454)||(48864048-48864098)
chr4 (527-660)||(7771989-7772122)
chr4 (560-661)||(7814076-7814176)
chr4 (395-448)||(48147018-48147071)
chr4 (541-661)||(7908895-7909018)
chr4 (555-643)||(48899357-48899445)
chr4 (602-661)||(48147116-48147175)
chr4 (533-612)||(49038217-49038296)
chr4 (404-474)||(48889469-48889539)
chr4 (344-378)||(49040258-49040292)
chr4 (583-661)||(49040542-49040620)
chr4 (414-486)||(7879173-7879246)
chr4 (409-474)||(48871403-48871468)
chr4 (409-474)||(48876707-48876772)
chr4 (593-661)||(48903551-48903619)
chr4 (547-634)||(50666932-50667020)
[»] chr2 (1 HSPs)
chr2 (554-654)||(29351028-29351128)
[»] chr5 (8 HSPs)
chr5 (544-661)||(9120362-9120482)
chr5 (80-167)||(9120886-9120973)
chr5 (404-485)||(9120554-9120635)
chr5 (539-625)||(29696874-29696960)
chr5 (533-627)||(29688762-29688853)
chr5 (266-307)||(9120760-9120801)
chr5 (409-458)||(29711705-29711754)
chr5 (342-378)||(9120699-9120735)
[»] chr1 (6 HSPs)
chr1 (405-488)||(24310977-24311063)
chr1 (412-480)||(24381859-24381927)
chr1 (404-452)||(24341215-24341263)
chr1 (404-452)||(24353580-24353628)
chr1 (595-654)||(24341017-24341076)
chr1 (595-654)||(24353382-24353441)
[»] chr7 (1 HSPs)
chr7 (406-488)||(48884638-48884720)
[»] chr8 (5 HSPs)
chr8 (554-661)||(4030143-4030250)
chr8 (417-490)||(4961734-4961807)
chr8 (542-621)||(4961864-4961943)
chr8 (539-603)||(12195978-12196042)
chr8 (539-603)||(12440406-12440470)
[»] chr3 (1 HSPs)
chr3 (539-624)||(11023846-11023931)
[»] chr6 (1 HSPs)
chr6 (529-572)||(21016508-21016551)


Alignment Details
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 533 - 661
Target Start/End: Original strand, 7237084 - 7237211
Alignment:
Q  533 gagtaaataatacaatataattataaatatcaagaaaatgatgaagggtgatatttcacaacctcaatcttcttgtttgtgtcatcttcttaagctcgct 632  Q
    ||||| |||| ||||||||||||||||||| |||||||  |||||||   |||||||||||| ||| | ||||||||||||||||||| ||||||  |||    
T  7237084 gagtacataaaacaatataattataaatataaagaaaacaatgaaggagaatatttcacaacatcattgttcttgtttgtgtcatctt-ttaagcatgct 7237182  T
Q  633 cattgtcaccagggagggaaagtagagac 661  Q
    ||||||||||| |||| ||||| ||||||    
T  7237183 cattgtcaccaaggagtgaaagcagagac 7237211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 534 - 654
Target Start/End: Complemental strand, 48871288 - 48871166
Alignment:
Q  534 agtaaataatacaatataat--tataaatatcaagaaaatgatgaagggtgatatttcacaacctcaatcttcttgtttgtgtcatcttcttaagctcgc 631  Q
    |||| ||||| |||||||||  ||||||||||||||||||| ||||||   ||| |||| ||||||| ||||||||||||||||| |||||||| |  ||    
T  48871288 agtacataattcaatataatgttataaatatcaagaaaatggtgaaggagaataattcaaaacctcattcttcttgtttgtgtcaccttcttaaacctgc 48871189  T
Q  632 tcattgtcaccagggagggaaag 654  Q
    ||||||||||||||||| |||||    
T  48871188 tcattgtcaccagggagtgaaag 48871166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 534 - 654
Target Start/End: Complemental strand, 48876592 - 48876470
Alignment:
Q  534 agtaaataatacaatataat--tataaatatcaagaaaatgatgaagggtgatatttcacaacctcaatcttcttgtttgtgtcatcttcttaagctcgc 631  Q
    |||| ||||| |||||||||  ||||||||||||||||||| ||||||   ||| |||| ||||||| ||||||||||||||||| |||||||| |  ||    
T  48876592 agtacataattcaatataatgttataaatatcaagaaaatggtgaaggagaataattcaaaacctcattcttcttgtttgtgtcaccttcttaaacctgc 48876493  T
Q  632 tcattgtcaccagggagggaaag 654  Q
    ||||||||||||||||| |||||    
T  48876492 tcattgtcaccagggagtgaaag 48876470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 534 - 654
Target Start/End: Complemental strand, 48886974 - 48886852
Alignment:
Q  534 agtaaataatacaatataat--tataaatatcaagaaaatgatgaagggtgatatttcacaacctcaatcttcttgtttgtgtcatcttcttaagctcgc 631  Q
    |||| ||||| |||||||||  ||||||||||||||||||| ||||||   ||| |||| ||||||| ||||||||||||||||| |||||||| |  ||    
T  48886974 agtacataattcaatataatgttataaatatcaagaaaatggtgaaggagaataattcaaaacctcattcttcttgtttgtgtcaccttcttaaacctgc 48886875  T
Q  632 tcattgtcaccagggagggaaag 654  Q
    ||||||||||||||||| |||||    
T  48886874 tcattgtcaccagggagtgaaag 48886852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 527 - 661
Target Start/End: Original strand, 45371399 - 45371533
Alignment:
Q  527 acccaggagtaaataatacaatataattataaatatcaagaaaatgatgaagggtgatatttcacaacctcaatcttcttgtttgtgtcatcttcttaag 626  Q
    ||||| ||||| ||||||||| |||||||||||| ||||||||||   ||||||| |||||| ||||||||| || |||||| |||| ||||||||||||    
T  45371399 acccaagagtacataatacaacataattataaatttcaagaaaatagggaagggtaatattttacaacctcattcatcttgtctgtgccatcttcttaag 45371498  T
Q  627 ctcgctcattgtcaccagggagggaaagtagagac 661  Q
    || | |||||||| | || ||| ||||| ||||||    
T  45371499 cttgatcattgtcgctagagagtgaaagcagagac 45371533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 404 - 488
Target Start/End: Complemental strand, 48899613 - 48899528
Alignment:
Q  404 caaacaaagttgtcaatatttccaataagcatattacaaa-tagttaaccaataaaaatttcatgacatattggatcaactcatgt 488  Q
    ||||||||| ||||||||||||||||||||||||| |||| |||| || ||||||| ||||||||||||||||||||| |||||||    
T  48899613 caaacaaagctgtcaatatttccaataagcatattgcaaaatagtgaaacaataaacatttcatgacatattggatcagctcatgt 48899528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 404 - 487
Target Start/End: Original strand, 49040386 - 49040469
Alignment:
Q  404 caaacaaagttgtcaatatttccaataagcatattacaaatagttaaccaataaaaatttcatgacatattggatcaactcatg 487  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||| | ||||  |||||||| | |||||||||||    
T  49040386 caaacaaagttgtcaatattaccaataagcatattacagatagttaaccaatatacattttgtgacatatcgaatcaactcatg 49040469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 394 - 486
Target Start/End: Original strand, 45365266 - 45365358
Alignment:
Q  394 atgaattacgcaaacaaagttgtcaatatttccaataagcatattacaaatagttaaccaataaaaatttcatgacatattggatcaactcat 486  Q
    |||||| || ||||||||| | ||||| ||||||||||||||||||||||| ||||||||||||| ||| |||||||| || ||||| |||||    
T  45365266 atgaatcacacaaacaaagatatcaatgtttccaataagcatattacaaattgttaaccaataaacattgcatgacatgttcgatcagctcat 45365358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 404 - 469
Target Start/End: Original strand, 7772964 - 7773029
Alignment:
Q  404 caaacaaagttgtcaatatttccaataagcatattacaaatagttaaccaataaaaatttcatgac 469  Q
    |||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| ||| ||||||    
T  7772964 caaacaaagttgtcaatatttccaataagcctatgacaaataattaaccaataaacattccatgac 7773029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 395 - 488
Target Start/End: Original strand, 45384078 - 45384170
Alignment:
Q  395 tgaattacgcaaacaaagttgtcaatatttccaataagcatattacaaatagttaaccaataaaaatttcatgacatattggatcaactcatgt 488  Q
    ||||| || |||||| ||||||||||||||| |||||||||||||||||| ||||||||||| | ||| |||||||| || ||||| |||||||    
T  45384078 tgaatcacacaaacagagttgtcaatatttc-aataagcatattacaaattgttaaccaatagacattgcatgacatgttcgatcagctcatgt 45384170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 407 - 480
Target Start/End: Complemental strand, 50667188 - 50667116
Alignment:
Q  407 acaaagttgtcaatatttccaataagcatattacaaatagttaaccaataaaaatttcatgacatattggatca 480  Q
    |||||||||||||||||  |||||||||||||||||| ||||||||||||||  |||||||||||| |||||||    
T  50667188 acaaagttgtcaatattctcaataagcatattacaaa-agttaaccaataaatgtttcatgacataatggatca 50667116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 539 - 625
Target Start/End: Original strand, 37826333 - 37826419
Alignment:
Q  539 ataatacaatataattataaatatcaagaaaatgatgaagggtgatatttcacaacctcaatcttcttgtttgtgtcatcttcttaa 625  Q
    ||||||||||||||||  |||||||||||||||| ||||||   ||||||   ||||||| ||||||||||||| ||||||||||||    
T  37826333 ataatacaatataattgaaaatatcaagaaaatggtgaaggagaatattttgaaacctcattcttcttgtttgtatcatcttcttaa 37826419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 560 - 661
Target Start/End: Complemental strand, 7801336 - 7801236
Alignment:
Q  560 tatcaagaaaatgatgaagggtgatatttcacaacctcaatcttcttgtttgtgtcatcttcttaagctcgctcattgtcaccagggagggaaagtagag 659  Q
    ||||||||||||| |||| | ||||||||||  |||||| | ||||||||| |||||||||||||| ||  ||||||||| |||||||| ||||| ||||    
T  7801336 tatcaagaaaatggtgaatgatgatatttcagtacctcatt-ttcttgtttttgtcatcttcttaaacttactcattgtccccagggagtgaaagcagag 7801238  T
Q  660 ac 661  Q
    ||    
T  7801237 ac 7801236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 600 - 645
Target Start/End: Original strand, 45365621 - 45365666
Alignment:
Q  600 tcttcttgtttgtgtcatcttcttaagctcgctcattgtcaccagg 645  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  45365621 tcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccagg 45365666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 600 - 661
Target Start/End: Original strand, 45384291 - 45384352
Alignment:
Q  600 tcttcttgtttgtgtcatcttcttaagctcgctcattgtcaccagggagggaaagtagagac 661  Q
    ||||||||||||||||||||||||||||| |||||||||||||||  || ||||| ||||||    
T  45384291 tcttcttgtttgtgtcatcttcttaagcttgctcattgtcaccagaaagtgaaaggagagac 45384352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 414 - 486
Target Start/End: Original strand, 37826188 - 37826260
Alignment:
Q  414 tgtcaatatttccaataagcatattacaaatagttaaccaataaaaatttcatgacatattggatcaactcat 486  Q
    |||||||||||  |||||||||||| |||| |||||||||||||| ||||||||| |||||| |||| |||||    
T  37826188 tgtcaatatttgtaataagcatattccaaacagttaaccaataaacatttcatgaaatattgaatcagctcat 37826260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 541 - 661
Target Start/End: Complemental strand, 50669801 - 50669681
Alignment:
Q  541 aatacaatataattataaatatcaagaaaatgatgaagggtgatatttcacaacctcaatcttcttgtttgtgtcatcttcttaagctcgctcattgtca 640  Q
    |||||||||||||||||||||| || |||||| ||||||   |||||||| |||||   ||||||||||||||||||||| || | || | |||| | ||    
T  50669801 aatacaatataattataaatataaataaaatggtgaaggagaatatttcaaaaccttgttcttcttgtttgtgtcatctttttgaacttgttcatggaca 50669702  T
Q  641 ccagggagggaaagtagagac 661  Q
     | ||||| ||||||||||||    
T  50669701 gcggggagtgaaagtagagac 50669681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 404 - 486
Target Start/End: Original strand, 7779124 - 7779204
Alignment:
Q  404 caaacaaagttgtcaatatttccaataagcatattacaaatagttaaccaataaaaatttcatgacatattggatcaactcat 486  Q
    |||| ||||||||||||||||||||||||||||  ||||||||| |||||||||| ||| ||||| ||||  | |||||||||    
T  7779124 caaagaaagttgtcaatatttccaataagcata--acaaatagtcaaccaataaacattccatgatatatcaggtcaactcat 7779204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 395 - 474
Target Start/End: Original strand, 45371246 - 45371325
Alignment:
Q  395 tgaattacgcaaacaaagttgtcaatatttccaataagcatattacaaatagttaaccaataaaaatttcatgacatatt 474  Q
    ||||| || |||||| |||||||||  ||||||| |||||||||||||| | |||| ||||||| |||||||||||||||    
T  45371246 tgaatcacacaaacagagttgtcaaagtttccaagaagcatattacaaacaattaatcaataaacatttcatgacatatt 45371325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 404 - 463
Target Start/End: Complemental strand, 50674713 - 50674654
Alignment:
Q  404 caaacaaagttgtcaatatttccaataagcatattacaaatagttaaccaataaaaattt 463  Q
    ||||||||| ||||||||||||||||||||||||| ||| |||||||| |||||| ||||    
T  50674713 caaacaaagctgtcaatatttccaataagcatattgcaactagttaacaaataaacattt 50674654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 584 - 661
Target Start/End: Complemental strand, 7787170 - 7787093
Alignment:
Q  584 tatttcacaacctcaatcttcttgtttgtgtcatcttcttaagctcgctcattgtcaccagggagggaaagtagagac 661  Q
    ||||||||||||||| | ||||||| |||||||||||||||| |  |||||| |||||| | ||| ||||||||||||    
T  7787170 tatttcacaacctcattgttcttgtctgtgtcatcttcttaaacatgctcatcgtcaccggagagtgaaagtagagac 7787093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 407 - 472
Target Start/End: Complemental strand, 7787540 - 7787475
Alignment:
Q  407 acaaagttgtcaatatttccaataagcatattacaaatagttaaccaataaaaatttcatgacata 472  Q
    |||||||||||||||||| | |||||||||| ||||| ||| ||| |||||| |||||||||||||    
T  7787540 acaaagttgtcaatattttcgataagcatatgacaaacagtaaacgaataaacatttcatgacata 7787475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 527 - 660
Target Start/End: Complemental strand, 7790807 - 7790674
Alignment:
Q  527 acccaggagtaaataatacaatataattataaatatcaagaaaatgatgaagggtgatatttcacaacctcaatcttcttgtttgtgtcatcttcttaag 626  Q
    ||||| ||||| |||| ||||||||||||||||||| |||||||  ||||||    ||||||  ||| |||| | || ||||||||| |||||||||||     
T  7790807 acccaagagtacataaaacaatataattataaatataaagaaaacaatgaagaagaatatttatcaaactcattgtttttgtttgtgacatcttcttaat 7790708  T
Q  627 ctcgctcattgtcaccagggagggaaagtagaga 660  Q
    |  |||||||||||||| | || ||||| |||||    
T  7790707 catgctcattgtcaccaagtagtgaaagcagaga 7790674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 560 - 661
Target Start/End: Complemental strand, 7823668 - 7823568
Alignment:
Q  560 tatcaagaaaatgatgaagggtgatatttcacaacctcaatcttcttgtttgtgtcatcttcttaagctcgctcattgtcaccagggagggaaagtagag 659  Q
    |||||| |||||| |||| | ||||||||||  |||||| | ||||||||| |||||||||||||| ||  ||||||||| |||||||| ||||| ||||    
T  7823668 tatcaataaaatggtgaatgatgatatttcagtacctcatt-ttcttgtttttgtcatcttcttaaacttactcattgtccccagggagtgaaagcagag 7823570  T
Q  660 ac 661  Q
    ||    
T  7823569 ac 7823568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 404 - 468
Target Start/End: Complemental strand, 7790922 - 7790858
Alignment:
Q  404 caaacaaagttgtcaatatttccaataagcatattacaaatagttaaccaataaaaatttcatga 468  Q
    |||||||||  |||||||||||||||| |||||| |||||| ||||||||||||| | |||||||    
T  7790922 caaacaaagcagtcaatatttccaatatgcatatgacaaatcgttaaccaataaatacttcatga 7790858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 395 - 474
Target Start/End: Complemental strand, 48853547 - 48853468
Alignment:
Q  395 tgaattacgcaaacaaagttgtcaatatttccaataagcatattacaaatagttaaccaataaaaatttcatgacatatt 474  Q
    ||||| |||||||||||||||| || ||||||||| | ||||| ||| ||| || ||||| ||| |||||||||||||||    
T  48853547 tgaatcacgcaaacaaagttgtaaacatttccaattaacatatcacagataattgaccaacaaacatttcatgacatatt 48853468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 546 - 617
Target Start/End: Complemental strand, 50673524 - 50673453
Alignment:
Q  546 aatataattataaatatcaagaaaatgatgaagggtgatatttcacaacctcaatcttcttgtttgtgtcat 617  Q
    ||||||||||||||||||||||||||| ||||||   |||||| | ||||||| ||||| |||||| |||||    
T  50673524 aatataattataaatatcaagaaaatggtgaaggaaaatattttaaaacctcattcttcatgtttgagtcat 50673453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 556 - 654
Target Start/End: Original strand, 48155780 - 48155878
Alignment:
Q  556 taaatatcaagaaaatgatgaagggtgatatttcacaacctcaatcttcttgtttgtgtcatcttcttaagctcgctcattgtcaccagggagggaaag 654  Q
    ||||||||||||||||  |||||| |  ||||| |  |||||| ||||||||||||||   |||||||| ||| || |||||||||||||||| |||||    
T  48155780 taaatatcaagaaaattgtgaaggatagtattttaatacctcattcttcttgtttgtgatgtcttcttaggcttgcacattgtcaccagggagtgaaag 48155878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 404 - 454
Target Start/End: Complemental strand, 48864098 - 48864048
Alignment:
Q  404 caaacaaagttgtcaatatttccaataagcatattacaaatagttaaccaa 454  Q
    ||||||||| |||||||||| || ||||||||||| |||||||||||||||    
T  48864098 caaacaaagctgtcaatattaccgataagcatattgcaaatagttaaccaa 48864048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 660
Target Start/End: Complemental strand, 7772122 - 7771989
Alignment:
Q  527 acccaggagtaaataatacaatataattataaatatcaagaaaatgatgaagggtgatatttcacaacctcaatcttcttgtttgtgtcatcttcttaag 626  Q
    ||||| ||||| |||| |||||||||||||||| || |||||||  ||||||    ||||||| ||| || | | || ||||||||| |||||||||||     
T  7772122 acccaagagtacataaaacaatataattataaagataaagaaaacaatgaagaagaatatttctcaaactgattgtttttgtttgtgacatcttcttaat 7772023  T
Q  627 ctcgctcattgtcaccagggagggaaagtagaga 660  Q
    |  |||||||||||||| | || ||||| |||||    
T  7772022 catgctcattgtcaccaagtagtgaaagcagaga 7771989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 560 - 661
Target Start/End: Complemental strand, 7814176 - 7814076
Alignment:
Q  560 tatcaagaaaatgatgaagggtgatatttcacaacctcaatcttcttgtttgtgtcatcttcttaagctcgctcattgtcaccagggagggaaagtagag 659  Q
    |||||| |||||| |||| | ||||||||||  |||||| | ||||| ||| |||||||||||||| ||  ||||||||| |||||||| ||||| ||||    
T  7814176 tatcaataaaatggtgaatgatgatatttcagtacctcatt-ttcttttttttgtcatcttcttaaacttactcattgtccccagggagtgaaagcagag 7814078  T
Q  660 ac 661  Q
    ||    
T  7814077 ac 7814076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 448
Target Start/End: Original strand, 48147018 - 48147071
Alignment:
Q  395 tgaattacgcaaacaaagttgtcaatatttccaataagcatattacaaatagtt 448  Q
    ||||| ||||||||||||||||||| |||||||| || |||| |||||||||||    
T  48147018 tgaatcacgcaaacaaagttgtcaacatttccaagaaacatactacaaatagtt 48147071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 541 - 661
Target Start/End: Complemental strand, 7909018 - 7908895
Alignment:
Q  541 aatacaatataattataaatatcaagaaaatgatgaagggtgatatttcacaacctcaatctt-----cttgtttgtgtcatctt-cttaagctcgctca 634  Q
    |||||||||||||||||||||| ||||||||  |  ||    |||||||||||||||| ||||     |||| |||||| ||||| ||||| || |||||    
T  7909018 aatacaatataattataaatatgaagaaaatcgttgaga---atatttcacaacctcagtcttgtcttcttgattgtgtgatctttcttaaacttgctca 7908922  T
Q  635 ttgtcaccagggagggaaagtagagac 661  Q
    |||||||||||||| ||||| ||||||    
T  7908921 ttgtcaccagggagtgaaagcagagac 7908895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 555 - 643
Target Start/End: Complemental strand, 48899445 - 48899357
Alignment:
Q  555 ataaatatcaagaaaatgatgaagggtgatatttcacaacctcaatcttcttgtttgtgtcatcttcttaagctcgctcattgtcacca 643  Q
    |||||||||||||||||| | ||||   |||||||| ||||||  ||||||||||| |||||||||| || ||  ||| ||||||||||    
T  48899445 ataaatatcaagaaaatggtaaaggagaatatttcaaaacctccttcttcttgtttatgtcatcttcctatgcctgctaattgtcacca 48899357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 661
Target Start/End: Original strand, 48147116 - 48147175
Alignment:
Q  602 ttcttgtttgtgtcatcttcttaagctcgctcattgtcaccagggagggaaagtagagac 661  Q
    ||||||||||||||||||||||| | | || ||||||||| |||||| ||||| ||||||    
T  48147116 ttcttgtttgtgtcatcttcttagggtagcacattgtcactagggagtgaaagcagagac 48147175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 612
Target Start/End: Original strand, 49038217 - 49038296
Alignment:
Q  533 gagtaaataatacaatataattataaatatcaagaaaatgatgaagggtgatatttcacaacctcaatcttcttgtttgt 612  Q
    ||||| |||||| | ||||  ||||||||||||||||||| ||||| |  |||||||| ||||||  |||||||||||||    
T  49038217 gagtacataataaagtatagctataaatatcaagaaaatggtgaagaggaatatttcataacctcgttcttcttgtttgt 49038296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 404 - 474
Target Start/End: Complemental strand, 48889539 - 48889469
Alignment:
Q  404 caaacaaagttgtcaatatttccaataagcatattacaaatagttaaccaataaaaatttcatgacatatt 474  Q
    ||||||||| ||||||||||| |||| | || | |||||| ||||||| | |||| |||||||||||||||    
T  48889539 caaacaaagctgtcaatattttcaattaacaaactacaaagagttaacaactaaatatttcatgacatatt 48889469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 344 - 378
Target Start/End: Original strand, 49040258 - 49040292
Alignment:
Q  344 gatcttgattaacatgcataaactcatcagactaa 378  Q
    |||| ||||||||||||||||||||||||||||||    
T  49040258 gatcctgattaacatgcataaactcatcagactaa 49040292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 583 - 661
Target Start/End: Original strand, 49040542 - 49040620
Alignment:
Q  583 atatttcacaacctcaatcttcttgtttgtgtcatcttcttaagctcgctcattgtcaccagggagggaaagtagagac 661  Q
    |||||| || |||||| |||||||||||||| |||||||||||||| ||| | |||||   ||||| ||||| ||||||    
T  49040542 atatttgactacctcattcttcttgtttgtgccatcttcttaagcttgctaactgtcattggggagtgaaagcagagac 49040620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 486
Target Start/End: Complemental strand, 7879246 - 7879173
Alignment:
Q  414 tgtcaatatttccaataagcatattacaa-atagttaaccaataaaaatttcatgacatattggatcaactcat 486  Q
    |||||||||||||||||||||||  ||||  |||| ||||| |||| ||| ||||||||||||| ||| |||||    
T  7879246 tgtcaatatttccaataagcatacgacaatttagtcaaccagtaaacattccatgacatattggttcacctcat 7879173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 48871468 - 48871403
Alignment:
Q  409 aaagttgtcaatatttccaataagcatattacaaatagttaaccaataaaaatttcatgacatatt 474  Q
    ||||||||||| |||| |||||| ||||||| |||||| ||| ||||||| | ||||| |||||||    
T  48871468 aaagttgtcaacattttcaataaacatattataaatagctaagcaataaacagttcataacatatt 48871403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 474
Target Start/End: Complemental strand, 48876772 - 48876707
Alignment:
Q  409 aaagttgtcaatatttccaataagcatattacaaatagttaaccaataaaaatttcatgacatatt 474  Q
    ||||||||||| |||| |||||| ||||||| |||||| ||| ||||||| | ||||| |||||||    
T  48876772 aaagttgtcaacattttcaataaacatattataaatagctaagcaataaacagttcataacatatt 48876707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 593 - 661
Target Start/End: Complemental strand, 48903619 - 48903551
Alignment:
Q  593 acctcaatcttcttgtttgtgtcatcttcttaagctcgctcattgtcaccagggagggaaagtagagac 661  Q
    |||||| ||||||| ||| || ||||||||||| || ||| | ||||||||||||| |||| |||||||    
T  48903619 acctcattcttcttatttatgccatcttcttaaacttgcttaatgtcaccagggagtgaaaatagagac 48903551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 547 - 634
Target Start/End: Complemental strand, 50667020 - 50666932
Alignment:
Q  547 atataattataaatatcaagaaaatgatgaagggtgatatttcacaacct-caatcttcttgtttgtgtcatcttcttaagctcgctca 634  Q
    ||||||||| ||||||||| |||||  ||||||   |||||||||||||| || ||||||||||| ||| || ||||||| || |||||    
T  50667020 atataattaaaaatatcaataaaatagtgaaggagaatatttcacaacctgcattcttcttgtttatgtgattttcttaaacttgctca 50666932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 554 - 654
Target Start/End: Complemental strand, 29351128 - 29351028
Alignment:
Q  554 tataaatatcaagaaaatgatgaagggtgatatttcacaacctcaatcttcttgtttgtgtcatcttcttaagctcgctcattgtcaccagggagggaaa 653  Q
    ||||| ||||||||||||  |||| | | |||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||| ||||| ||||    
T  29351128 tataattatcaagaaaatagtgaaagataatatttcacaacctcattcttcttgtttgagtcatcttcttaagcttgctcattgtcaccggggagtgaaa 29351029  T
Q  654 g 654  Q
    |    
T  29351028 g 29351028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 544 - 661
Target Start/End: Complemental strand, 9120482 - 9120362
Alignment:
Q  544 acaatataattataaatatcaagaaaatgatgaagggtgatatttcacaacctcaatcttctt---gtttgtgtcatcttcttaagctcgctcattgtca 640  Q
    ||||||||| |||||| |||||||||||| ||||||   |||||||| ||||||| |||||||   ||||||||||||| |||||||| | |||||||||    
T  9120482 acaatataactataaaaatcaagaaaatggtgaaggagaatatttcaaaacctcattcttcttcttgtttgtgtcatctccttaagcttgttcattgtca 9120383  T
Q  641 ccagggagggaaagtagagac 661  Q
    |||||||| ||||| ||||||    
T  9120382 ccagggagtgaaagcagagac 9120362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 167
Target Start/End: Complemental strand, 9120973 - 9120886
Alignment:
Q  80 atgatcttatcttcctattttaaagagtcaagcaagcaaagaaaacaatgatgagtgctgacaatataatcctattccactttataag 167  Q
    ||||||||||||||||||| |||||||||| |||| ||| ||||| | ||||| ||| ||| ||||||| ||||||||| ||||||||    
T  9120973 atgatcttatcttcctattgtaaagagtcatgcaaacaaggaaaatactgatgggtggtgataatataaccctattccattttataag 9120886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 404 - 485
Target Start/End: Complemental strand, 9120635 - 9120554
Alignment:
Q  404 caaacaaagttgtcaatatttccaataagcatattacaaatagttaaccaataaaaatttcatgacatattggatcaactca 485  Q
    |||||||||||||||||||||| |||||||| |  ||||| |||||| ||||| |||||||||||| | |||||||| ||||    
T  9120635 caaacaaagttgtcaatatttcaaataagcacaacacaaacagttaagcaatacaaatttcatgacctgttggatcacctca 9120554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 539 - 625
Target Start/End: Complemental strand, 29696960 - 29696874
Alignment:
Q  539 ataatacaatataattataaatatcaagaaaatgatgaagggtgatatttcacaacctcaatcttcttgtttgtgtcatcttcttaa 625  Q
    ||||||||||||||||||||| |||| ||||||| |||||    ||| |||| ||||||| |||||||| || ||||||||||||||    
T  29696960 ataatacaatataattataaagatcatgaaaatggtgaagaagaatacttcaaaacctcattcttcttggttctgtcatcttcttaa 29696874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 533 - 627
Target Start/End: Complemental strand, 29688853 - 29688762
Alignment:
Q  533 gagtaaataatacaatataattataaatatcaagaaaatgatgaagggtgatatttcacaacctcaatcttcttgtttgtgtcatcttcttaagc 627  Q
    ||||| ||||||| ||||||||||||| |||| ||||||| |||||||  ||| || | |||||||   ||||||| || |||||||||||||||    
T  29688853 gagtacataatactatataattataaagatcatgaaaatggtgaaggggaatacttgaaaacctca---ttcttgtctgcgtcatcttcttaagc 29688762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 9120801 - 9120760
Alignment:
Q  266 aaaggttaacggaaatgctatgctttgagaagataataatca 307  Q
    ||||||||| ||||||| |||| |||||||||||||||||||    
T  9120801 aaaggttaatggaaatgttatgttttgagaagataataatca 9120760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 458
Target Start/End: Original strand, 29711705 - 29711754
Alignment:
Q  409 aaagttgtcaatatttccaataagcatattacaaatagttaaccaataaa 458  Q
    |||| |||||| |||| |||||||||||||||||||  ||||||||||||    
T  29711705 aaagctgtcaacattttcaataagcatattacaaatgtttaaccaataaa 29711754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 342 - 378
Target Start/End: Complemental strand, 9120735 - 9120699
Alignment:
Q  342 ttgatcttgattaacatgcataaactcatcagactaa 378  Q
    |||||||||||| |||||||||||||||| |||||||    
T  9120735 ttgatcttgattgacatgcataaactcatgagactaa 9120699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 5e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 405 - 488
Target Start/End: Complemental strand, 24311063 - 24310977
Alignment:
Q  405 aaacaaagttgtcaatatttccaataagcatattacaaatagtt---aaccaataaaaatttcatgacatattggatcaactcatgt 488  Q
    |||||||| || ||||||||||||||| ||||||||||||||||   || ||||||| |||||||||||||||||||||||||||||    
T  24311063 aaacaaagctgccaatatttccaataaacatattacaaatagttaagaaacaataaacatttcatgacatattggatcaactcatgt 24310977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 412 - 480
Target Start/End: Complemental strand, 24381927 - 24381859
Alignment:
Q  412 gttgtcaatatttccaataagcatattacaaatagttaaccaataaaaatttcatgacatattggatca 480  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||| ||||||||    
T  24381927 gttgtcaatatttccaataaacatgttacaaatagttaaccaataaacatttcatgacatgttggatca 24381859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 404 - 452
Target Start/End: Complemental strand, 24341263 - 24341215
Alignment:
Q  404 caaacaaagttgtcaatatttccaataagcatattacaaatagttaacc 452  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  24341263 caaacaaagttgttaatatttccaataaacatattacaaatagttaacc 24341215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 404 - 452
Target Start/End: Complemental strand, 24353628 - 24353580
Alignment:
Q  404 caaacaaagttgtcaatatttccaataagcatattacaaatagttaacc 452  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  24353628 caaacaaagttgttaatatttccaataaacatattacaaatagttaacc 24353580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 595 - 654
Target Start/End: Complemental strand, 24341076 - 24341017
Alignment:
Q  595 ctcaatcttcttgtttgtgtcatcttcttaagctcgctcattgtcaccagggagggaaag 654  Q
    |||| |||||||||||||| ||||||||||||||  ||||||||||| |||||| |||||    
T  24341076 ctcattcttcttgtttgtgccatcttcttaagcttcctcattgtcactagggagtgaaag 24341017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 595 - 654
Target Start/End: Complemental strand, 24353441 - 24353382
Alignment:
Q  595 ctcaatcttcttgtttgtgtcatcttcttaagctcgctcattgtcaccagggagggaaag 654  Q
    |||| |||||||||||||| ||||||||||||||  ||||||||||| |||||| |||||    
T  24353441 ctcattcttcttgtttgtgccatcttcttaagcttcctcattgtcactagggagtgaaag 24353382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 406 - 488
Target Start/End: Complemental strand, 48884720 - 48884638
Alignment:
Q  406 aacaaagttgtcaatatttccaataagcatattacaaatagttaaccaataaaaatttcatgacatattggatcaactcatgt 488  Q
    ||||||| |||||||||||||||||| || |||| ||||| ||||||| |||| |||||||| ||||||||||||||||||||    
T  48884720 aacaaagctgtcaatatttccaataaccaaattaaaaataattaaccactaaacatttcatgtcatattggatcaactcatgt 48884638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 554 - 661
Target Start/End: Original strand, 4030143 - 4030250
Alignment:
Q  554 tataaatatcaagaaaatgatgaagggtgatatttcacaacctcaatcttcttgtttgtgtcatcttcttaagctcgctcattgtcaccagggagggaaa 653  Q
    ||||| ||||||||||||  |||| | | ||| |||| || |||| |||||||||||| |||||||||||||||| ||||||||| ||||||||| ||||    
T  4030143 tataattatcaagaaaatagtgaaagataatacttcaaaaactcattcttcttgtttgagtcatcttcttaagcttgctcattgttaccagggagtgaaa 4030242  T
Q  654 gtagagac 661  Q
    | ||||||    
T  4030243 gcagagac 4030250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 417 - 490
Target Start/End: Original strand, 4961734 - 4961807
Alignment:
Q  417 caatatttccaataagcatattacaaatagttaaccaataaaaatttcatgacatattggatcaactcatgtcg 490  Q
    ||||||||||  |||||||||||| ||||||||||||||||| ||||||||||||||  ||||| ||| |||||    
T  4961734 caatatttccggtaagcatattacgaatagttaaccaataaacatttcatgacatatcagatcagctcctgtcg 4961807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 542 - 621
Target Start/End: Original strand, 4961864 - 4961943
Alignment:
Q  542 atacaatataattataaatatcaagaaaatgatgaagggtgatatttcacaacctcaatcttcttgtttgtgtcatcttc 621  Q
    |||||| |||| ||||||||||||||||||| |||| |   |||||||| ||||| | ||||||| ||| ||||||||||    
T  4961864 atacaacataactataaatatcaagaaaatggtgaatgagaatatttcaaaacctgattcttcttatttatgtcatcttc 4961943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 539 - 603
Target Start/End: Complemental strand, 12196042 - 12195978
Alignment:
Q  539 ataatacaatataattataaatatcaagaaaatgatgaagggtgatatttcacaacctcaatctt 603  Q
    ||||||||| || | |||||||||||||||||||| |||||   |||||||| ||||||| ||||    
T  12196042 ataatacaacattactataaatatcaagaaaatgaagaaggagaatatttcaaaacctcattctt 12195978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 539 - 603
Target Start/End: Complemental strand, 12440470 - 12440406
Alignment:
Q  539 ataatacaatataattataaatatcaagaaaatgatgaagggtgatatttcacaacctcaatctt 603  Q
    ||||||||| || | |||||||||||||||||||| |||||   |||||||| ||||||| ||||    
T  12440470 ataatacaacattactataaatatcaagaaaatgaagaaggagaatatttcaaaacctcattctt 12440406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 539 - 624
Target Start/End: Original strand, 11023846 - 11023931
Alignment:
Q  539 ataatacaatataattataaatatcaagaaaatgatgaagggtgatatttcacaacctcaatcttcttgtttgtgtcatcttctta 624  Q
    |||||||| ||||||||||||||| ||||||| | |||||    || ||||||||| ||| ||||||| | |||||||||||||||    
T  11023846 ataatacactataattataaatattaagaaaaagttgaagaaaaatgtttcacaacttcattcttcttctgtgtgtcatcttctta 11023931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 572
Target Start/End: Complemental strand, 21016551 - 21016508
Alignment:
Q  529 ccaggagtaaataatacaatataattataaatatcaagaaaatg 572  Q
    ||||||||| |||||||||| ||||||||||||| |||||||||    
T  21016551 ccaggagtacataatacaatttaattataaatataaagaaaatg 21016508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University