View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16459_high_3 (Length: 575)
Name: NF16459_high_3
Description: NF16459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16459_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 13 - 556
Target Start/End: Complemental strand, 38955124 - 38954575
Alignment:
| Q |
13 |
aaaatcacatttaatcaaaacatcaattgcacttttcattatgtacctgttatataaatcaactaacaaaaatgttagacgatgnnnnnnnggattcttt |
112 |
Q |
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| T |
38955124 |
aaaatcacatttaatcaaaacatcaattgcacttttcattatgcacctgttatataaatcaactaacaaaa-tgttagacgatgaaaaaaaggattcttt |
38955026 |
T |
|
| Q |
113 |
gcatggcctgtggcctaaattttccaccagaaccatattgaattgaaggcatacctaaagtgtaaatatagaaatcctggaatctgtcaagaacttgaca |
212 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38955025 |
gcatggcctgtggcctaaattttccacccgaaccatattgaattgaaggcatacctaaagtgtaaatatagaaatcctggaatctgtcaagaacttgaca |
38954926 |
T |
|
| Q |
213 |
tccaacacggatttgacagtgattttacctgtacgcagatgatacaaccacaagcttcaaatccaccttccataattctaagcaacttattatacttaga |
312 |
Q |
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| T |
38954925 |
tccaacacggatttgacagtgattttacctgtacgcagatgatacaaccacaagcttcaaatccaccttccataattctaagcaacttattatacttaga |
38954826 |
T |
|
| Q |
313 |
atctaaggccaccacgtgaaaatttacacct-------gccaaaacttgtcatgaaaaattgaaaacaatcaacatggcattgtcctagagcctaacagg |
405 |
Q |
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| T |
38954825 |
atctaaggccaccacgtgaaaatttacacctttaccgagccaaaacttctcatgaaaaattgaaaacaatcaacatggcattgtcctagagcctaacagg |
38954726 |
T |
|
| Q |
406 |
caagccaaaattgtggaatgtcctgatagttccatcactgccagctgctactattgttagaccccatgtttctgatatattccttccatggctactatct |
505 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38954725 |
caagccaaaattgtggaatgtcttgatagttccatcactgccagctgctactattgttagaccccatgtttctgatatattccttccatggctactatct |
38954626 |
T |
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| Q |
506 |
tcgtgacataaattttgatgatcacattcatcttctacaagaggtaaatcc |
556 |
Q |
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| T |
38954625 |
tcgtgacataaattttgatgatcacattcatcttctacaagaggtaaatcc |
38954575 |
T |
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