View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16459_high_4 (Length: 447)

Name: NF16459_high_4
Description: NF16459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16459_high_4
NF16459_high_4
[»] chr4 (16 HSPs)
chr4 (7-431)||(3954201-3954610)
chr4 (7-431)||(4002220-4002646)
chr4 (10-431)||(4025150-4025573)
chr4 (7-431)||(4009917-4010343)
chr4 (9-269)||(3801509-3801769)
chr4 (9-422)||(4218566-4218972)
chr4 (160-421)||(3987069-3987341)
chr4 (10-266)||(3809940-3810196)
chr4 (160-269)||(3817658-3817767)
chr4 (160-269)||(3919697-3919806)
chr4 (160-269)||(3932921-3933030)
chr4 (7-119)||(3986916-3987028)
chr4 (6-57)||(3933121-3933172)
chr4 (6-52)||(3817516-3817562)
chr4 (6-52)||(3919902-3919948)
chr4 (232-268)||(3963218-3963254)
[»] chr5 (1 HSPs)
chr5 (7-431)||(13397871-13398297)
[»] scaffold1360 (1 HSPs)
scaffold1360 (219-269)||(1916-1966)
[»] chr8 (6 HSPs)
chr8 (212-269)||(7069128-7069185)
chr8 (217-268)||(7075639-7075690)
chr8 (6-40)||(7023411-7023445)
chr8 (6-40)||(7075419-7075453)
chr8 (6-52)||(7092860-7092906)
chr8 (7-40)||(7036509-7036542)


Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 7 - 431
Target Start/End: Complemental strand, 3954610 - 3954201
Alignment:
Q  7 acatcatcaagaacaataagaaccttcatacggccaatccttctctgaatattatcagacaacccatttggtgaatcgattttcacatcttctgctaata 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3954610 acatcatcaagaacaataagaaccttcatacggccaatccttctctgaatattattagacaacccatttggtgaatcgattttcacatcttctgctaata 3954511  T
Q  107 gtgtagaaaaaagctctttttnnnnnnntgctgttacgtgccttcctaattcgtcactcacctttgccaaaaaacaacaaccttcatattcagagcaact 206  Q
    |||| ||||||||||                 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3954510 gtgttgaaaaaagct-----------------gttccgtgccttcctaattcgtcactcacctttgccaaaaaacaacaaccttcatattcagagcaact 3954428  T
Q  207 tcggttataaacttcttcagtaatagttgtcttgccaatacctcccataccccaaattccaatgaca--aaccttttctgacttttgacgtaacaatgat 304  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  3954427 tcggttataaacttcttcagcaatagttgtcttgccaatacctcccataccccaaattccaatgacacaaaccttttctgacttttgacgtaacaatgat 3954328  T
Q  305 tctaaatgtccaactggtttggcaattccaatatatccttttgtgttaataggatacttactcaacctcttcaacacaagattgatgatttcttcaagta 404  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3954327 tctaaatgtccaactggtttggcaattccaatatatccttctgtgttaataggatacttactcaacctcttcaacacaagattgatgatttcttcaagta 3954228  T
Q  405 tctcagcatcattcctatacaacaaaa 431  Q
    ||||| |||||||||||||||||||||    
T  3954227 tctcaacatcattcctatacaacaaaa 3954201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 7 - 431
Target Start/End: Original strand, 4002220 - 4002646
Alignment:
Q  7 acatcatcaagaacaataagaaccttcatacggccaatccttctctgaatattatcagacaacccatttggtgaatcgattttcacatcttctgctaata 106  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||| || ||||| ||||||||||||||  ||||||||||||||||||||||    
T  4002220 acatcatcaagaacaataagaaccttcatacggccaatcatcctctgaatataattagacagcccatttggtgaattaattttcacatcttctgctaata 4002319  T
Q  107 gtgtagaaaaaagctctttttnnnnnnntgctgttacgtgccttcctaattcgtcactcacctttgccaaaaaacaacaaccttcatattcagagcaact 206  Q
    ||||||||||||||| || ||       || | || | ||||||||| |||| ||||| |||||| ||||||||||| ||||||||||||||||||||||    
T  4002320 gtgtagaaaaaagcttttcttttaaaaatgttattccatgccttcctgattcttcacttaccttttccaaaaaacaaaaaccttcatattcagagcaact 4002419  T
Q  207 tcggttataaacttcttcagtaatagttgtcttgccaatacctcccataccccaaattccaatgacaa--accttttctgacttttgacgtaacaatgat 304  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||| ||||||||||||||||    
T  4002420 tcggttaaaaacttcttcagcaatagttgtcttgccaatacctcccataccccaaattccaatgacacggaccttttctaactgttgacgtaacaatgat 4002519  T
Q  305 tctaaatgtccaactggtttggcaattccaatatatccttttgtgttaataggatacttactcaacctcttcaacacaagattgatgatttcttcaagta 404  Q
    ||||||||| ||||||||||| |||||||||||  ||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  4002520 tctaaatgtgcaactggtttgccaattccaataagtccttttgtattaatagggtgcttactcaacctcttcaacacaagattgatgatttcttcaagta 4002619  T
Q  405 tctcagcatcattcctatacaacaaaa 431  Q
     ||||||||||||||||||||||||||    
T  4002620 gctcagcatcattcctatacaacaaaa 4002646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 431
Target Start/End: Original strand, 4025150 - 4025573
Alignment:
Q  10 tcatcaagaacaataagaaccttcatacggccaatccttctctgaatattatcagacaacccatttggtgaatcgattttcacatcttctgctaatagtg 109  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||||||||||     
T  4025150 tcatcaagaacaataaggaccttcatacggccaatccttctctcaatataactagacaacccatttggtgaatcgattttcacatcttctgctaatagtc 4025249  T
Q  110 tagaaaaaagctctttttnnnnnnntgctgttacgtgccttcctaattcgtcactcacctttgccaaaaaacaacaaccttcatattcagagcaacttcg 209  Q
    |||||||||| | || ||       || | || | || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| || |    
T  4025250 tagaaaaaagtttttctttcaaaaatgttattccatgtcttcctaattcttcacttacctttgccaaaaaacaacaaccttcatattcagagcaattttg 4025349  T
Q  210 gttataaacttcttcagtaatagttgtcttgccaatacctcccataccccaaattccaatgaca--aaccttttctgacttttgacgtaacaatgattct 307  Q
     ||| ||| |||||| | |||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||| |||||||||||| ||||||    
T  4025350 tttaaaaatttcttcggcaatagttgtcttgccaatacctcccataccccaaattccaataacacgaaccttttctgactcttgacgtaacaacgattct 4025449  T
Q  308 aaatgtccaactggtttggcaattccaatatatccttttgtgttaataggatacttactcaacctcttcaacacaagattgatgatttcttcaagtatct 407  Q
    |||||  | | ||||||| |||||||||||  |||||||||||||||||| | ||| |||||||| |||| ||||||||||||||||||||||||||  |    
T  4025450 aaatgagccattggtttgccaattccaataagtccttttgtgttaatagggtgcttgctcaaccttttcatcacaagattgatgatttcttcaagtagtt 4025549  T
Q  408 cagcatcattcctatacaacaaaa 431  Q
    | || |||||||||||||||||||    
T  4025550 cggcgtcattcctatacaacaaaa 4025573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 7 - 431
Target Start/End: Original strand, 4009917 - 4010343
Alignment:
Q  7 acatcatcaagaacaataagaaccttcatacggccaatccttctctgaatattatcagacaacccatttggtgaatcgattttcacatcttctgctaata 106  Q
    |||||||||||||||||||||||||||||||| ||||||||||||  | ||| || ||||||||||||||| |||  |||||||||||||||||||||||    
T  4009917 acatcatcaagaacaataagaaccttcatacgaccaatccttctcacagtataattagacaacccatttggcgaacggattttcacatcttctgctaata 4010016  T
Q  107 gtgtagaaaaaagctctttttnnnnnnntgctgttacgtgccttcctaattcgtcactcacctttgccaaaaaacaacaaccttcatattcagagcaact 206  Q
    ||||||||||||| | || ||       || | || | || ||||||||||  || || |||||| |||||||||||||||||||||||||||||||| |    
T  4010017 gtgtagaaaaaagtttttctttcaaaaatgttcttccatgtcttcctaattgctcgcttaccttttccaaaaaacaacaaccttcatattcagagcaatt 4010116  T
Q  207 tcggttataaacttcttcagtaatagttgtcttgccaatacctcccataccccaaattccaatgaca--aaccttttctgacttttgacgtaacaatgat 304  Q
    | ||||| ||| |||| | | |||||||||||||||||||| |||||| ||||||||||||||||||   ||||||||||||| ||   ||||||||||     
T  4010117 ttggttaaaaatttctcctgcaatagttgtcttgccaatacttcccatgccccaaattccaatgacactgaccttttctgactctttttgtaacaatgaa 4010216  T
Q  305 tctaaatgtccaactggtttggcaattccaatatatccttttgtgttaataggatacttactcaacctcttcaacacaagattgatgatttcttcaagta 404  Q
    |  |||||| ||| || |||| |||||||||||  |||||||| |||||  || | ||||||||||||||||||||  ||||||||||||||||| ||||    
T  4010217 ttcaaatgtgcaattgatttgtcaattccaataagtccttttgagttaactgggtgcttactcaacctcttcaacaatagattgatgatttcttcgagta 4010316  T
Q  405 tctcagcatcattcctatacaacaaaa 431  Q
     |||||||||||| |||||||||||||    
T  4010317 gctcagcatcatttctatacaacaaaa 4010343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 9 - 269
Target Start/End: Original strand, 3801509 - 3801769
Alignment:
Q  9 atcatcaagaacaataagaaccttcatacggccaatccttctctgaatattatcagacaacccatttggtgaatcgattttcacatcttctgctaatagt 108  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||   ||||||     
T  3801509 atcatcaagatcaataagaaccttcatacggccaatccttctatgaatattattagacaacccatttggtgaatcgattttcacatcttcatttaatagg 3801608  T
Q  109 gtagaaaaaagctctttttnnnnnnntgctgttacgtgccttcctaattcgtcactcacctttgccaaaaaacaacaaccttcatattcagagcaacttc 208  Q
     |||||||||||| || ||       || | || |  |||||||||||||   |||||| |||| || |||||||||||| ||||||||| ||| | ||     
T  3801609 ttagaaaaaagcttttctttttaaattgttattccacgccttcctaattccaaactcacatttgacataaaacaacaaccatcatattcaaagcgatttt 3801708  T
Q  209 ggttataaacttcttcagtaatagttgtcttgccaatacctcccataccccaaattccaat 269  Q
    ||||| | | |||||| | ||||||||||||||||||||| ||||||||||||||||||||    
T  3801709 ggttaaatatttcttctgcaatagttgtcttgccaataccgcccataccccaaattccaat 3801769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 9 - 422
Target Start/End: Original strand, 4218566 - 4218972
Alignment:
Q  9 atcatcaagaacaataagaaccttcatacggccaatccttctctgaatattatcagacaacccatttggtgaatcgattttcacatcttctgctaatagt 108  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||   ||||||     
T  4218566 atcatcaagaacaataagaaccttcatacggtcaatccttctatgaatattattagacaacccatttgatgaatcgattttcacatcttcatttaatagg 4218665  T
Q  109 gtagaaaaaagctctttttnnnnnnntgctgttacgtgccttcctaattcgtcactcacctttgccaaaaaacaacaaccttcatattcagagcaacttc 208  Q
     |||||||||||  || ||       || | || |  | |||  |||| |   |||||| |||| || |||||||||||| ||||||||||| ||| ||     
T  4218666 ttagaaaaaagcatttcttttaaaaatgttattccacgactttgtaatcccaaactcacatttgacataaaacaacaaccatcatattcagaacaaattt 4218765  T
Q  209 ggttataaacttcttcagtaatagttgtcttgccaatacctcccataccccaaattccaatgaca--aaccttttctgacttttgacgtaacaatgattc 306  Q
    ||| | | | |||||  | ||||||||||||||||||||| |||||||||||||||||||| |||   |||||| | |||| ||    ||||||||| |     
T  4218766 ggtcaaataattcttttgcaatagttgtcttgccaataccgcccataccccaaattccaataacacggacctttcccgactctttgtttaacaatgaatt 4218865  T
Q  307 taaatgtccaactggtttggcaattccaatatatccttttgtgttaataggatacttactcaacctcttcaacacaagattgatgatttcttcaagtatc 406  Q
     |||||| ||| ||||||| | |||||||||  |||||||| |         ||||||| ||| ||| ||||||||| |||| |||||||||| || | |    
T  4218866 caaatgtgcaattggtttgtccattccaataagtccttttgag---------tacttacccaaactcatcaacacaaaattggtgatttcttccagcagc 4218956  T
Q  407 tcagcatcattcctat 422  Q
    ||||||||||||||||    
T  4218957 tcagcatcattcctat 4218972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 160 - 421
Target Start/End: Original strand, 3987069 - 3987341
Alignment:
Q  160 tcactcacctttgccaaaaaacaacaaccttcatattcagagcaacttcggttataaacttcttcagtaatagttgtcttgccaatacctcccatacccc 259  Q
    ||||||||||||||||||||||||||||| ||||||||||||| | || ||||| ||| |||||| | |||||||||||||||||| ||   ||||||||    
T  3987069 tcactcacctttgccaaaaaacaacaaccatcatattcagagcgattttggttaaaaatttcttctgcaatagttgtcttgccaatgccaggcatacccc 3987168  T
Q  260 aaattccaatgaca--aaccttttctgacttttgacgtaacaatgattctaaatgtccaactggtttggcaattccaatatatccttttgtgttaatagg 357  Q
    |||||||||| |||   ||||||| ||||| ||    ||||||||| | ||||||| ||| || |||| |||||||||||  |||||||| |||||  ||    
T  3987169 aaattccaatcacacggaccttttgtgactctttctttaacaatgaatttaaatgtgcaattgatttgtcaattccaataagtccttttgagttaactgg 3987268  T
Q  358 atacttac---------tcaacctcttcaacacaagattgatgatttcttcaagtatctcagcatcattccta 421  Q
     | |||||         |||||||| ||||||||| |||| ||||||||||||| | ||||||||||||||||    
T  3987269 gtgcttactcaacatcttcaacctcatcaacacaacattggtgatttcttcaagcagctcagcatcattccta 3987341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 10 - 266
Target Start/End: Original strand, 3809940 - 3810196
Alignment:
Q  10 tcatcaagaacaataagaaccttcatacggccaatccttctctgaatattatcagacaacccatttggtgaatcgattttcacatcttctgctaatagtg 109  Q
    ||||||||||| |||||||||||||| ||||||||||  |||| ||||| |  || ||||| |||||||| ||| ||||||||||||||||| ||||||     
T  3809940 tcatcaagaacgataagaaccttcatgcggccaatccgcctctcaatatcactaggcaaccaatttggtgtatcaattttcacatcttctgccaatagtt 3810039  T
Q  110 tagaaaaaagctctttttnnnnnnntgctgttacgtgccttcctaattcgtcactcacctttgccaaaaaacaacaaccttcatattcagagcaacttcg 209  Q
    |||||||||| |  ||||         |  || | || |||  ||| || ||||| |||||| |||| ||||||||||| ||||||||||| ||| || |    
T  3810040 tagaaaaaagtttattttttaaagaatccattccatgtcttgttaactcttcacttaccttttccaagaaacaacaaccatcatattcagaacaaatttg 3810139  T
Q  210 gttataaacttcttcagtaatagttgtcttgccaatacctcccataccccaaattcc 266  Q
    || | | | |||||  | ||||||||||||||||||||| |||||||||||||||||    
T  3810140 gtcaaataattcttttgcaatagttgtcttgccaataccacccataccccaaattcc 3810196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 269
Target Start/End: Original strand, 3817658 - 3817767
Alignment:
Q  160 tcactcacctttgccaaaaaacaacaaccttcatattcagagcaacttcggttataaacttcttcagtaatagttgtcttgccaatacctcccatacccc 259  Q
    ||||| |||||| |||| ||||||||||| ||||| || || | | || || || | | |||||| | ||||||||||||||||||||| ||||| ||||    
T  3817658 tcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccatgcccc 3817757  T
Q  260 aaattccaat 269  Q
    ||||||||||    
T  3817758 aaattccaat 3817767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 269
Target Start/End: Complemental strand, 3919806 - 3919697
Alignment:
Q  160 tcactcacctttgccaaaaaacaacaaccttcatattcagagcaacttcggttataaacttcttcagtaatagttgtcttgccaatacctcccatacccc 259  Q
    ||||| |||||| |||| ||||||||||| ||||| || || | | || || || | | |||||| | ||||||||||||||||||||| ||||| ||||    
T  3919806 tcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccatgcccc 3919707  T
Q  260 aaattccaat 269  Q
    ||||||||||    
T  3919706 aaattccaat 3919697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 269
Target Start/End: Complemental strand, 3933030 - 3932921
Alignment:
Q  160 tcactcacctttgccaaaaaacaacaaccttcatattcagagcaacttcggttataaacttcttcagtaatagttgtcttgccaatacctcccatacccc 259  Q
    ||||| |||||| |||| ||||||||||| ||||| || || | | || || || | | |||||| | ||||||||||||||||||||| ||||| ||||    
T  3933030 tcactgaccttttccaagaaacaacaaccatcataatcggaacgattttggctaaatatttcttctgcaatagttgtcttgccaataccgcccatgcccc 3932931  T
Q  260 aaattccaat 269  Q
    ||||||||||    
T  3932930 aaattccaat 3932921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 3986916 - 3987028
Alignment:
Q  7 acatcatcaagaacaataagaaccttcatacggccaatccttctctgaatattatcagacaacccatttggtgaatcgattttcacatcttctgctaata 106  Q
    |||||||||||||  |||||||||||||| || ||||| | ||||| ||||| |   ||||||| |||||||| ||| |||||||||||||| || ||||    
T  3986916 acatcatcaagaatgataagaaccttcatgcgtccaattcgtctctcaatatcactggacaacctatttggtgtatcaattttcacatcttcggccaata 3987015  T
Q  107 gtgtagaaaaaag 119  Q
     | ||| ||||||    
T  3987016 ttttagtaaaaag 3987028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 3933172 - 3933121
Alignment:
Q  6 gacatcatcaagaacaataagaaccttcatacggccaatccttctctgaata 57  Q
    |||||||||||||||||||||||| ||||| ||||| |||| ||||| ||||    
T  3933172 gacatcatcaagaacaataagaactttcatgcggccgatccgtctctcaata 3933121  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 3817516 - 3817562
Alignment:
Q  6 gacatcatcaagaacaataagaaccttcatacggccaatccttctct 52  Q
    ||||||||||||||| |||||||||||||| |||| ||||| |||||    
T  3817516 gacatcatcaagaacgataagaaccttcatgcggctaatccgtctct 3817562  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 3919948 - 3919902
Alignment:
Q  6 gacatcatcaagaacaataagaaccttcatacggccaatccttctct 52  Q
    ||||||||||||||| |||||||||||||| |||| ||||| |||||    
T  3919948 gacatcatcaagaacgataagaaccttcatgcggctaatccgtctct 3919902  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 3963254 - 3963218
Alignment:
Q  232 gttgtcttgccaatacctcccataccccaaattccaa 268  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  3963254 gttgtcttgccaataccacccataccccaaatcccaa 3963218  T

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Target: chr5 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 7 - 431
Target Start/End: Original strand, 13397871 - 13398297
Alignment:
Q  7 acatcatcaagaacaataagaaccttcatacggccaatccttctctgaatattatcagacaacccatttggtgaatcgattttcacatcttctgctaata 106  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| |  || ||||||||||| |||||||||||| ||||||||||||||||    
T  13397871 acatcatcaagaacaataagaaccttcatatggccaatccttctctgaatataactaggcaacccatttgatgaatcgatttttacatcttctgctaata 13397970  T
Q  107 gtgtagaaaaaagctctttttnnnnnnntgctgttacgtgccttcctaattcgtcactcacctttgccaaaaaacaacaaccttcatattcagagcaact 206  Q
    ||||||||| ||||| || ||        ||| || | |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| |    
T  13397971 gtgtagaaacaagcttttcttttaaaaacgctattccatgccttcctaattcttcactcacctttgccaaaaaacaacatccttcatattcagaacaaat 13398070  T
Q  207 tcggttataaacttcttcagtaatagttgtcttgccaatacctcccataccccaaattccaatgaca--aaccttttctgacttttgacgtaacaatgat 304  Q
    | | ||| ||| |||||| | |||||||||||| ||||||||||||||||||||||| ||||| ||   |||||||||||||| |||| ||||||||| |    
T  13398071 ttgattaaaaatttcttcggcaatagttgtctttccaatacctcccataccccaaataccaattacgcgaaccttttctgactcttgatgtaacaatggt 13398170  T
Q  305 tctaaatgtccaactggtttggcaattccaatatatccttttgtgttaataggatacttactcaacctcttcaacacaagattgatgatttcttcaagta 404  Q
    ||||||||| ||| || |||  |||||||||||  ||||||||| |||| ||| | |||| ||||||||||||||||||| |||||||||||||||||||    
T  13398171 tctaaatgtgcaattgctttctcaattccaataagtccttttgttttaacagggtgcttattcaacctcttcaacacaagcttgatgatttcttcaagta 13398270  T
Q  405 tctcagcatcattcctatacaacaaaa 431  Q
     ||||||||||||||||| ||||||||    
T  13398271 gctcagcatcattcctatgcaacaaaa 13398297  T

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Target: scaffold1360 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1360
Description:

Target: scaffold1360; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 1966 - 1916
Alignment:
Q  219 ttcttcagtaatagttgtcttgccaatacctcccataccccaaattccaat 269  Q
    |||||| | ||||||||||||||||||||| ||||| ||||||||||||||    
T  1966 ttcttctgcaatagttgtcttgccaataccgcccatgccccaaattccaat 1916  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 269
Target Start/End: Original strand, 7069128 - 7069185
Alignment:
Q  212 tataaacttcttcagtaatagttgtcttgccaatacctcccataccccaaattccaat 269  Q
    |||| |||||||| | |||||||||||| |||||||| | ||||||||||||||||||    
T  7069128 tatatacttcttctgcaatagttgtctttccaataccactcataccccaaattccaat 7069185  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 268
Target Start/End: Original strand, 7075639 - 7075690
Alignment:
Q  217 acttcttcagtaatagttgtcttgccaatacctcccataccccaaattccaa 268  Q
    |||||||||| ||||||||| || |||||||||  |||||||||||||||||    
T  7075639 acttcttcagcaatagttgttttaccaatacctggcataccccaaattccaa 7075690  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 7023445 - 7023411
Alignment:
Q  6 gacatcatcaagaacaataagaaccttcatacggc 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  7023445 gacatcatcaagaacaataagaaccttcatgcggc 7023411  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 7075419 - 7075453
Alignment:
Q  6 gacatcatcaagaacaataagaaccttcatacggc 40  Q
    |||||||||||||||||||||||||||||| ||||    
T  7075419 gacatcatcaagaacaataagaaccttcatgcggc 7075453  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 7092860 - 7092906
Alignment:
Q  6 gacatcatcaagaacaataagaaccttcatacggccaatccttctct 52  Q
    |||||| |||||||||||||||||||||||||| | |||||| ||||    
T  7092860 gacatcgtcaagaacaataagaaccttcatacgacgaatcctcctct 7092906  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 40
Target Start/End: Complemental strand, 7036542 - 7036509
Alignment:
Q  7 acatcatcaagaacaataagaaccttcatacggc 40  Q
    ||||||||||||||||||||||||||||| ||||    
T  7036542 acatcatcaagaacaataagaaccttcatgcggc 7036509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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