View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16459_low_1 (Length: 777)
Name: NF16459_low_1
Description: NF16459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16459_low_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 758; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 758; E-Value: 0
Query Start/End: Original strand, 12 - 777
Target Start/End: Original strand, 55738566 - 55739331
Alignment:
| Q |
12 |
aggagcacagatgacattcccggatggggaacttttttccatggccttgttggtgatggaagtgtcagtgtaagtactacatgtatctctcttttgtctt |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55738566 |
aggatcacagatgacattcccggatggggaacttttttccatggccttgttggtgatggaagtgtcagtgtaagtactacatgtatctctcttttgtctt |
55738665 |
T |
|
| Q |
112 |
cagattgaagtcttgtctggtgtccgatatgtgctagtgtttaagagttgagacataatctatattacaaactagtgctaatgtcatgtttgttaatcaa |
211 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55738666 |
cagattgaagtcgtgtctggtgtccgatatgtgctagtgtttaagagttgagacataatctatattacaaactagtgctaatgtcatgtttgttaatcaa |
55738765 |
T |
|
| Q |
212 |
ttaaactttgtcattttttcataatataggttatggtggctgtattattgttcataataccgaacagaaaacaagagggtgagaggctaatggattggaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55738766 |
ttaaactttgtcattttttcataatataggttatggtggctgtattattgttcataataccgaacagaaaacaagagggtgagaggctaatggattggaa |
55738865 |
T |
|
| Q |
312 |
tgaatgcaagaaactaccttggaacctaattttgttacttggagctggttttgctttagctgatggagttcaatctagtggtctagcagatgtgctttct |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55738866 |
tgaatgcaagaaactaccttggaacctaattttgttacttggagctggttttgctttagctgatggagttcaatctagtggtctagcagatgtgctttct |
55738965 |
T |
|
| Q |
412 |
aaagctttagatttcttagaagatgccccatatttggcaattgctcctgcagttagtcttataagtagtattattactgaattcatcacttctaatgatg |
511 |
Q |
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| T |
55738966 |
aaagctttagatttcttagaagatgccccatatttggcaattgctcctgcagttagtcttataagtagtattattactgaattcatcacttctaatgatg |
55739065 |
T |
|
| Q |
512 |
ccactgctacacttattattccacttctatatcatatagctaggactatgcatgtacatcctcttcttcttatgatcccaggagcaattgctactgaatt |
611 |
Q |
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| T |
55739066 |
ccactgctacacttattattccacttctatatcatatagctaggactatgcatgtacatcctcttcttcttatgatcccaggagcaattgctactgaatt |
55739165 |
T |
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| Q |
612 |
tgctttcttgcttcctacgtcaactccctcaaatgtagttggttttgctactggtcacattgaaattcaagatacgctcaaagttggtctgccacttaag |
711 |
Q |
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| T |
55739166 |
tgctttcttgcttcctacgtcaactccctcaaatgtagttggttttgctactggtcacattgaaattcaagatacgctcaaagttggtctgccacttaag |
55739265 |
T |
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| Q |
712 |
gttgctgggatagctgtgctctcagtttttatgccatctctaggtaaattatttgcaaaattattc |
777 |
Q |
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| T |
55739266 |
gttgctgggatagctgtgctctcagtttttatgccatctctaggtaaattatttgcaaaattattc |
55739331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 3e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 250 - 719
Target Start/End: Original strand, 9380791 - 9381260
Alignment:
| Q |
250 |
gctgtattattgttcataataccgaacagaaaacaagagggtgagaggctaatggattggaatgaatgcaagaaactaccttggaacctaattttgttac |
349 |
Q |
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||||| ||||| |||||||| || |||| || ||| | || |||| ||||||||| |||||||||||||| || |||| ||||||||||||||| | | |
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| T |
9380791 |
gctgtcttattattcataatcccaaacatgaagcaaaatggggagaagctaatggactggaatgaatgcaaaaagttaccatggaacctaattttgcttc |
9380890 |
T |
|
| Q |
350 |
ttggagctggttttgctttagctgatggagttcaatctagtggtctagcagatgtgctttctaaagctttagatttcttagaagatgccccatatttggc |
449 |
Q |
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| T |
9380891 |
taggagctggatttgccttagcagatggagtacaatctagtggtctagctgatgtaatgtcaaaagccttagaattcttaaaagatgttccatacttagc |
9380990 |
T |
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| Q |
450 |
aattgctcctgcagttagtcttataagtagtattattactgaattcatcacttctaatgatgccactgctacacttattattccacttctatatcatata |
549 |
Q |
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| T |
9380991 |
aattgttcctgctgttagtctactatgtagcattatcactgaattcatcacttccaatgatgccacagccacacttcttgttccacttttgtatcacata |
9381090 |
T |
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| Q |
550 |
gctaggactatgcatgtacatcctcttcttcttatgatcccaggagcaattgctactgaatttgctttcttgcttcctacgtcaactccctcaaatgtag |
649 |
Q |
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| T |
9381091 |
gccataaatatgcatgttcatccacttcttcttatgatccctggtggtatagcaactgagtttgcattctggcttccaacatcaacaccttcaaatgttg |
9381190 |
T |
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| Q |
650 |
ttggttttgctactggtcacattgaaattcaagatacgctcaaagttggtctgccacttaaggttgctgg |
719 |
Q |
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| T |
9381191 |
ttggatttgccactggacatattgaaattaaagacatgcttaaagttggtgtgccacttaaggttgctgg |
9381260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 9379667 - 9379735
Alignment:
| Q |
19 |
cagatgacattcccggatggggaacttttttccatggccttgttggtgatggaagtgtcagtgtaagta |
87 |
Q |
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|||||||| | || ||||||||| ||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
9379667 |
cagatgacttacctggatggggagttttgttccatggccttgttggtgatggaagcatcagtgtaagta |
9379735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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