View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16459_low_11 (Length: 235)
Name: NF16459_low_11
Description: NF16459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16459_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 4653170 - 4653373
Alignment:
| Q |
18 |
cattgctagcaagaggccggaaactataatcgtcgcaacaatcgctatggtgatcttaannnnnnnngatgattgggttgaaaaatcctgatcaatggat |
117 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||| |
|
|
| T |
4653170 |
cattgctagcaagaggctggaaactacaatcgtcgcaacaatcgctatggtgatcttaattttttttggtgattgggttgaaaattcctgatcaatggat |
4653269 |
T |
|
| Q |
118 |
tttgttattgatcctgcaagattgtcgttgtagtcactttcttttaaaatctggattccattcaatatgacatcacgatattttgtgtggttagttgctc |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
4653270 |
tttgttattgatcctgcgagattgtcgttgtagtcactttcttttaaaatctggattccattcaatatgacatcgcggtattttgtgtggttagttgctc |
4653369 |
T |
|
| Q |
218 |
tctg |
221 |
Q |
| |
|
|||| |
|
|
| T |
4653370 |
tctg |
4653373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 4666671 - 4666740
Alignment:
| Q |
110 |
caatggattttgttattgatcctgcaagattgtcgttgtagtcactttcttttaaaatctggattccatt |
179 |
Q |
| |
|
|||||||||||| ||||| |||||| ||||||| || | ||||||| ||||||||||| ||||||||| |
|
|
| T |
4666671 |
caatggattttgatattggtcctgcgagattgttatttttgtcacttatttttaaaatctcgattccatt |
4666740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 202
Target Start/End: Complemental strand, 18926104 - 18926009
Alignment:
| Q |
107 |
gatcaatggattttgttattgatcctgcaagattgtcgttgtagtcactttcttttaaaatctggattccattcaatatgacatcacgatattttg |
202 |
Q |
| |
|
||||| ||||||||| |||||||||||| ||||||| || | ||||||| ||| ||||||| ||| ||||||||| |||||| ||| ||||||| |
|
|
| T |
18926104 |
gatcattggattttgatattgatcctgcgagattgttatttttgtcacttattttcaaaatctcgatcccattcaatgtgacattacggtattttg |
18926009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University