View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16459_low_12 (Length: 230)
Name: NF16459_low_12
Description: NF16459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16459_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 44992284 - 44992479
Alignment:
| Q |
18 |
atgtacctgctgaagtttggttgcaattttctgatacatccaattgagctccggcaagtagctctctttcatagctttaatctattgtttaagatcatca |
117 |
Q |
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| T |
44992284 |
atgtacctgctgaagtttggttgcaattttctgatacatccaattgagctccggcaagtagctctctttcatagctttaatctgttgtttaaaatcatca |
44992383 |
T |
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| Q |
118 |
gaatcaaataaagaatgtgttagaaaccattaaatatctcatgcaagaatctggattactgctgttgttgtattaaacagcacaataagtaaaata |
213 |
Q |
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| T |
44992384 |
gaatcaaataaagaatgtgttagaaaccattaaatatctcatgcaagaatctggattactgctgttgttgtattaaacagcacaataagtaaaata |
44992479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 44978906 - 44979053
Alignment:
| Q |
18 |
atgtacctgctgaagtttggttgcaattttctgatacatccaattgagctccggcaagtagctctctttcatagctttaatctattgtttaagatcatca |
117 |
Q |
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| T |
44978906 |
atgtacctgctgaagtttcgttgctattttctgatacatctcattgagctccggcaagtagctctctttcataactttgatctattg-ttaaaatcatca |
44979004 |
T |
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| Q |
118 |
gaatcaaataaagaatgtgttagaaaccattaaatatctcatgcaagaat |
167 |
Q |
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| T |
44979005 |
gaatc-aataaagaatgtgttagaaaccatgaaatatgtcacacaagaat |
44979053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 44980719 - 44980865
Alignment:
| Q |
20 |
gtacctgctgaagtttggttgcaattttctgatacatccaattgagctccggcaagtagctctctttcatagctttaatctattgtttaagatcatcaga |
119 |
Q |
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| T |
44980719 |
gtacctgctgaagtttcgttgcaattttctgaatcatctcactaagctttggcaagtagctctctttcatagctttgatctattgttaaa-atcatcata |
44980817 |
T |
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| Q |
120 |
atcaaataaagaatgtgttagaaaccattaaatatctcatgcaagaat |
167 |
Q |
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||||||||||||| || ||||||||||| ||||||||||||||||||| |
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| T |
44980818 |
atcaaataaagaacgttttagaaaccatgaaatatctcatgcaagaat |
44980865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 152
Target Start/End: Original strand, 44964748 - 44964878
Alignment:
| Q |
21 |
tacctgctgaagtttggttgcaattttctgatacatccaattgagctccggcaagtagctctctttcatagctttaatctattgtttaagatcatcagaa |
120 |
Q |
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| T |
44964748 |
tacctgatgaagtttcgttgcgattttctgatacatctcgctaagctctggcaagtagctctctttcatagctttgatctatt-attaaaatcatccaaa |
44964846 |
T |
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| Q |
121 |
tcaaataaagaatgtgttagaaaccattaaat |
152 |
Q |
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| T |
44964847 |
tcatataaggaatgtgttagaaaccataaaat |
44964878 |
T |
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