View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16459_low_8 (Length: 264)

Name: NF16459_low_8
Description: NF16459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16459_low_8
NF16459_low_8
[»] chr8 (1 HSPs)
chr8 (75-231)||(40970799-40970955)
[»] chr5 (1 HSPs)
chr5 (61-231)||(30336220-30336388)
[»] chr4 (1 HSPs)
chr4 (61-231)||(22682398-22682566)
[»] chr7 (2 HSPs)
chr7 (126-164)||(39449407-39449445)
chr7 (69-105)||(39449383-39449419)


Alignment Details
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 75 - 231
Target Start/End: Complemental strand, 40970955 - 40970799
Alignment:
Q  75 aactgcactaacccgtataactgcaaagcttcnnnnnnnnnnnnnngaaggaactgcaaagcttttaaaagcaaactgtaatatttcaaaggaatgaaag 174  Q
    ||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40970955 aactgcactaacccgtataactgcaaagcttctttttttttttgttgaaggaactgcaaagcttttaaaagcaaactgtaatatttcaaacgaatgaaag 40970856  T
Q  175 caaactgcaaagtgacgtgagaagaaactgtaatatttcaagcttataaaagcaatc 231  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  40970855 caaactgcaaagtgacgtgggaagaaactgtaatatttcaagcttataaaagcaatc 40970799  T

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Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 61 - 231
Target Start/End: Original strand, 30336220 - 30336388
Alignment:
Q  61 ttccaaacctctcaaactgcactaacccgtataactgcaaagcttcnnnnnnnnnnnnnngaaggaactgcaaagcttttaaaagcaaactgtaatattt 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||    
T  30336220 ttccaaacctctcaaactgcactaacccgtataactgcaaagcttctttttt--------gaaggaactgcaaagcttttaaaagcaaactgtaatattt 30336311  T
Q  161 caaaggaatgaaagcaaactgcaaa------gtgacgtgagaagaaactgtaatatttcaagcttataaaagcaatc 231  Q
    |||| ||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||    
T  30336312 caaacgaatgaaagcaaactgcaaagcttttgtgacgtgagaagaaactgtaatatttcaagcttataaaagcaatc 30336388  T

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Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 61 - 231
Target Start/End: Original strand, 22682398 - 22682566
Alignment:
Q  61 ttccaaacctctcaaactgcactaacccgtataactgcaaagcttcnnnnnnnnnnnnnngaaggaactgcaaagcttttaaaagcaaactgtaatattt 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||    
T  22682398 ttccaaacctctcaaactgcactaacccgtataactgcaaagcttctttttt--------gaaggaactgcaaagcttttaaaagcaaactgtaatattt 22682489  T
Q  161 caaaggaatgaaagcaaactgcaaa------gtgacgtgagaagaaactgtaatatttcaagcttataaaagcaatc 231  Q
    |||| ||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||    
T  22682490 caaacgaatgaaagcaaactgcaaagcttttgtgacgtgagaagaaactgtaatatttcaagcttataaaagcaatc 22682566  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 39449407 - 39449445
Alignment:
Q  126 aactgcaaagcttttaaaagcaaactgtaatatttcaaa 164  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  39449407 aactgcaaagcttataaaagcaaactgtaatattgcaaa 39449445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 39449383 - 39449419
Alignment:
Q  69 ctctcaaactgcactaacccgtataactgcaaagctt 105  Q
    |||||||||||||||||||  ||||||||||||||||    
T  39449383 ctctcaaactgcactaaccaatataactgcaaagctt 39449419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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