View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1645_high_10 (Length: 234)

Name: NF1645_high_10
Description: NF1645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1645_high_10
NF1645_high_10
[»] chr7 (5 HSPs)
chr7 (1-154)||(6932180-6932333)
chr7 (155-193)||(35498467-35498505)
chr7 (155-196)||(26734255-26734296)
chr7 (155-196)||(1649222-1649263)
chr7 (155-195)||(44409270-44409310)
[»] chr6 (3 HSPs)
chr6 (1-154)||(14544730-14544883)
chr6 (155-193)||(26669646-26669684)
chr6 (156-192)||(1395578-1395614)
[»] chr4 (9 HSPs)
chr4 (1-154)||(508244-508397)
chr4 (108-210)||(8241151-8241253)
chr4 (1-56)||(8241253-8241308)
chr4 (155-196)||(33359887-33359928)
chr4 (155-196)||(49039429-49039470)
chr4 (155-193)||(47416538-47416576)
chr4 (155-195)||(21023337-21023377)
chr4 (155-195)||(41492484-41492524)
chr4 (156-192)||(54264999-54265035)
[»] chr5 (5 HSPs)
chr5 (1-154)||(26290854-26291007)
chr5 (155-196)||(28537205-28537246)
chr5 (155-196)||(37986851-37986892)
chr5 (155-196)||(31556888-31556929)
chr5 (155-196)||(35813227-35813267)
[»] chr2 (7 HSPs)
chr2 (31-121)||(39324404-39324494)
chr2 (155-195)||(10602076-10602116)
chr2 (155-194)||(39334867-39334906)
chr2 (155-194)||(1244639-1244678)
chr2 (158-196)||(12206571-12206609)
chr2 (155-196)||(36413830-36413871)
chr2 (155-196)||(41305050-41305091)
[»] chr3 (6 HSPs)
chr3 (73-126)||(9195238-9195291)
chr3 (155-194)||(21248976-21249015)
chr3 (155-194)||(49299226-49299265)
chr3 (155-196)||(40160805-40160846)
chr3 (155-191)||(24160517-24160553)
chr3 (155-191)||(51017859-51017895)
[»] chr1 (8 HSPs)
chr1 (155-196)||(12553264-12553305)
chr1 (155-196)||(3341720-3341761)
chr1 (155-196)||(41677130-41677171)
chr1 (155-194)||(33844687-33844726)
chr1 (155-194)||(33949252-33949291)
chr1 (155-196)||(9768793-9768834)
chr1 (155-196)||(50199460-50199501)
chr1 (155-195)||(2903012-2903052)
[»] scaffold0119 (1 HSPs)
scaffold0119 (155-193)||(1109-1147)
[»] scaffold0039 (1 HSPs)
scaffold0039 (156-193)||(25462-25499)


Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 6932180 - 6932333
Alignment:
Q  1 aatattaccaagattttaatctttggattgttggggatggaattactttgatagtttgtccaagtatttttgtttcactaataactattatttcagatac 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6932180 aatattaccaagattttaatctttggactgttggggatggaattactttgatagtttgtacaagtatttttgtttcactaataactattatttcagatac 6932279  T
Q  101 ttcatggtacgaaattatttggactacaagaccaaatcagattattgagcaaga 154  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6932280 ttcatggtacggaattatttggactacaagaccaaatcagattattgagcaaga 6932333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 35498467 - 35498505
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccacta 193  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  35498467 ccacttattcactttgaaaaaggtgaattctagccacta 35498505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 26734296 - 26734255
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactaggc 196  Q
    |||||||||||| ||||||||| |||||||||||||||||||    
T  26734296 ccacttattcaccttgaaaaaggtgaattctagccactaggc 26734255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 1649222 - 1649263
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactaggc 196  Q
    |||||||||||| ||||||| | |||||||||||||||||||    
T  1649222 ccacttattcaccttgaaaatggtgaattctagccactaggc 1649263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 44409270 - 44409310
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactagg 195  Q
    |||||||||||| ||||||||| ||||||||| ||||||||    
T  44409270 ccacttattcaccttgaaaaaggtgaattctaaccactagg 44409310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 14544730 - 14544883
Alignment:
Q  1 aatattaccaagattttaatctttggattgttggggatggaattactttgatagtttgtccaagtatttttgtttcactaataactattatttcagatac 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14544730 aatattaccaagattttaatctttggactgttggggatggaattactttgatagtttgtacaagtatttttgtttcactaataactattatttcagatac 14544829  T
Q  101 ttcatggtacgaaattatttggactacaagaccaaatcagattattgagcaaga 154  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14544830 ttcatggtacggaattatttggactacaagaccaaatcagattattgagcaaga 14544883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 26669684 - 26669646
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccacta 193  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  26669684 ccacttattcaccttgaaaaaggtgaattctagccacta 26669646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 1395614 - 1395578
Alignment:
Q  156 cacttattcactttgaaaaagctgaattctagccact 192  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  1395614 cacttattcaccttgaaaaaggtgaattctagccact 1395578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 508244 - 508397
Alignment:
Q  1 aatattaccaagattttaatctttggattgttggggatggaattactttgatagtttgtccaagtatttttgtttcactaataactattatttcagatac 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  508244 aatattaccaagattttaatctttggactgttggggatggaattactttgatagtttgtacaagtatttttgtttcactaataactattatttcagatac 508343  T
Q  101 ttcatggtacgaaattatttggactacaagaccaaatcagattattgagcaaga 154  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  508344 ttcatggtacggaattatttggactacaagaccaaatcagattattgagcaaga 508397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 8241253 - 8241151
Alignment:
Q  108 tacgaaattatttggactacaagaccaaatcagattattgagcaagaccacttattcactttgaaaaagctgaattctagccactaggcagtggctactt 207  Q
    |||| |||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  8241253 tacggaattatctggactacaagaccaaatctgattattgagcaagactacttattcactttgaaaaagctgaattctagccactaggcagtgactattt 8241154  T
Q  208 gac 210  Q
    |||    
T  8241153 gac 8241151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 8241308 - 8241253
Alignment:
Q  1 aatattaccaagattttaatctttggattgttggggatggaattactttgatagtt 56  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8241308 aatattaccaagattttaatctttggactgttggggatggaattactttgatagtt 8241253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 33359887 - 33359928
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactaggc 196  Q
    |||||||||||| ||||||||| |||||||||||||||||||    
T  33359887 ccacttattcaccttgaaaaaggtgaattctagccactaggc 33359928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 49039470 - 49039429
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactaggc 196  Q
    |||||||||||| ||||||||| |||||||||||||||||||    
T  49039470 ccacttattcaccttgaaaaaggtgaattctagccactaggc 49039429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 47416538 - 47416576
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccacta 193  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  47416538 ccacttattcactttgaaaaaggtgaattctaaccacta 47416576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 21023377 - 21023337
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactagg 195  Q
    |||||||||||| ||||||||| ||||||||| ||||||||    
T  21023377 ccacttattcaccttgaaaaaggtgaattctaaccactagg 21023337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 41492524 - 41492484
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactagg 195  Q
    ||||||||| || ||||||||| ||||||||||||||||||    
T  41492524 ccacttatttaccttgaaaaaggtgaattctagccactagg 41492484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Original strand, 54264999 - 54265035
Alignment:
Q  156 cacttattcactttgaaaaagctgaattctagccact 192  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  54264999 cacttattcaccttgaaaaagatgaattctagccact 54265035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 26290854 - 26291007
Alignment:
Q  1 aatattaccaagattttaatctttggattgttggggatggaattactttgatagtttgtccaagtatttttgtttcactaataactattatttcagatac 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26290854 aatattaccaagattttaatctttggactgttggggatggaattactttgatagtttgtacaagtatttttgtttcactaataactattatttcagatac 26290953  T
Q  101 ttcatggtacgaaattatttggactacaagaccaaatcagattattgagcaaga 154  Q
    ||||||||||  |||||||| |||||||||||||||||||||||||||||||||    
T  26290954 ttcatggtacagaattattttgactacaagaccaaatcagattattgagcaaga 26291007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 28537205 - 28537246
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactaggc 196  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  28537205 ccacttattcactttgaaaatggtgaattctagccactaggc 28537246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 37986892 - 37986851
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactaggc 196  Q
    |||||||||||| ||||||||| |||||||||||||||||||    
T  37986892 ccacttattcaccttgaaaaaggtgaattctagccactaggc 37986851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 31556888 - 31556929
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactaggc 196  Q
    |||||||||||| ||||||| | |||||||||||||||||||    
T  31556888 ccacttattcaccttgaaaagggtgaattctagccactaggc 31556929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 35813267 - 35813227
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactaggc 196  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  35813267 ccacttattc-ctttgaaaaaggtgaattctagccactaggc 35813227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 39324494 - 39324404
Alignment:
Q  31 ttggggatggaattactttgatagtttgtccaagtatttttgtttcactaataactattatttcagatacttcatggtacgaaattatttg 121  Q
    ||||||||||||||| ||||||||||||| || |||||||||||||| |||||| ||||| | ||||||| |||| |||| ||||||||||    
T  39324494 ttggggatggaattattttgatagtttgtacatgtatttttgtttcaataataaatattactccagatacatcattgtaccaaattatttg 39324404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 10602076 - 10602116
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactagg 195  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  10602076 ccacttattcactttgaaaaagatgaattctagccactagg 10602116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 39334906 - 39334867
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactag 194  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  39334906 ccacttattcactttgaaaaaggtgaattctagccactag 39334867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 1244639 - 1244678
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactag 194  Q
    |||||||||||| ||||||||| |||||||||||||||||    
T  1244639 ccacttattcaccttgaaaaaggtgaattctagccactag 1244678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 12206571 - 12206609
Alignment:
Q  158 cttattcactttgaaaaagctgaattctagccactaggc 196  Q
    ||||||||| ||||||||| |||||||||||||||||||    
T  12206571 cttattcaccttgaaaaaggtgaattctagccactaggc 12206609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 36413830 - 36413871
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactaggc 196  Q
    |||||||||||||||||||||| |||||| |||||| |||||    
T  36413830 ccacttattcactttgaaaaaggtgaattttagccattaggc 36413871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 41305091 - 41305050
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactaggc 196  Q
    |||||||||||| ||||||||| ||||||| |||||||||||    
T  41305091 ccacttattcaccttgaaaaaggtgaattcgagccactaggc 41305050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 9195238 - 9195291
Alignment:
Q  73 tttcactaataactattatttcagatacttcatggtacgaaattatttggacta 126  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  9195238 tttcactaataactattatttcagatacttcatggtacggaattatttggacta 9195291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 21249015 - 21248976
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactag 194  Q
    |||||||||||| ||||||||| |||||||||||||||||    
T  21249015 ccacttattcaccttgaaaaaggtgaattctagccactag 21248976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 49299265 - 49299226
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactag 194  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  49299265 ccacttattcaccttgagaaagctgaattctagccactag 49299226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 40160805 - 40160846
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactaggc 196  Q
    |||||||||||| || |||||| |||||||||||||||||||    
T  40160805 ccacttattcacctttaaaaaggtgaattctagccactaggc 40160846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 24160553 - 24160517
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccac 191  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  24160553 ccacttattcactttcaaaaagttgaattctagccac 24160517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 51017859 - 51017895
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccac 191  Q
    |||||||||||||||||||||  ||||||||||||||    
T  51017859 ccacttattcactttgaaaaaagtgaattctagccac 51017895  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 12553264 - 12553305
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactaggc 196  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  12553264 ccacttattcactttgaaaaaggtgaattctagccactaggc 12553305  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 3341761 - 3341720
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactaggc 196  Q
    |||||||||||| ||||||||| |||||||||||||||||||    
T  3341761 ccacttattcaccttgaaaaaggtgaattctagccactaggc 3341720  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 41677130 - 41677171
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactaggc 196  Q
    |||||||||||| ||||||||| |||||||||||||||||||    
T  41677130 ccacttattcaccttgaaaaaggtgaattctagccactaggc 41677171  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 33844687 - 33844726
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactag 194  Q
    |||||||||||||||||||||| |||||| ||||||||||    
T  33844687 ccacttattcactttgaaaaaggtgaattatagccactag 33844726  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 33949291 - 33949252
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactag 194  Q
    |||||||||||||||||||||| |||||| ||||||||||    
T  33949291 ccacttattcactttgaaaaaggtgaattatagccactag 33949252  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 9768834 - 9768793
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactaggc 196  Q
    |||||||||||| ||||||||| ||||||||||| |||||||    
T  9768834 ccacttattcaccttgaaaaaggtgaattctagctactaggc 9768793  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 50199501 - 50199460
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactaggc 196  Q
    |||||||||||| ||||||||| | |||||||||||||||||    
T  50199501 ccacttattcaccttgaaaaaggtcaattctagccactaggc 50199460  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 2903052 - 2903012
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccactagg 195  Q
    |||||||||||| |||||||||  |||||||||||||||||    
T  2903052 ccacttattcaccttgaaaaaggagaattctagccactagg 2903012  T

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Target: scaffold0119 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 1109 - 1147
Alignment:
Q  155 ccacttattcactttgaaaaagctgaattctagccacta 193  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  1109 ccacttattcaccttgaaaaaggtgaattctagccacta 1147  T

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Target: scaffold0039 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 25462 - 25499
Alignment:
Q  156 cacttattcactttgaaaaagctgaattctagccacta 193  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  25462 cacttattcactttgaaaaaggtgaattctaaccacta 25499  T

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