View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1645_high_2 (Length: 454)
Name: NF1645_high_2
Description: NF1645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1645_high_2 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 16 - 454
Target Start/End: Complemental strand, 30104746 - 30104308
Alignment:
| Q |
16 |
gtttgcactctgcagccctgacaactcattggcctctcgcatactatgttcatcaaccccataagcttctcctattgacttaaccgtttcaccatagttc |
115 |
Q |
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| T |
30104746 |
gtttgcactttgcagccctgacaactcattggcctctcgcatactatgttcatcaacaccataagcttctcctatcgacttaaccgtttcaccatagttc |
30104647 |
T |
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| Q |
116 |
accatgtgaacgagtaaggaggtaaccccttttgccgtcaggtttgctgtgggacaagcacatagtattggaactgtgagctcagcatcaagttgaatta |
215 |
Q |
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| T |
30104646 |
accatgtgaacgagtaaggaggtaaccccttttgccgtcaggtttgctgtgggacaagcacatagtattggaactgtgagctcagcatcaagttgaattg |
30104547 |
T |
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| Q |
216 |
agacaggagcatagtagttctgacccatcaatgcctggcaggttgtaaggccttggtaagtttcttttaccaactcatagtaagtatcattctgctttac |
315 |
Q |
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| T |
30104546 |
agacaggagcatagtagttctgacccatcaatgcctggcaggttgtaaggccttggtaagtttcttttaccaactcatagtaagtatcattctgctttac |
30104447 |
T |
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| Q |
316 |
agtgtaagatgtactatgctggtagatatttccatcacatgaacaaaagactgggacaatgattgatttatttgaaggaatcttttcatttaaagggatc |
415 |
Q |
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| T |
30104446 |
agagtaagatgtactatgctggtagatatttccatcacatgaacaaaagactgggacaatgattgatttatttgaaggaatcttttcatttaaagggatc |
30104347 |
T |
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| Q |
416 |
ttattgattgaggctatggctgatgcttcagagcgaaga |
454 |
Q |
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| T |
30104346 |
ttattgattgaggctatggctgatgcttcagagcgaaga |
30104308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 37 - 454
Target Start/End: Complemental strand, 30114937 - 30114520
Alignment:
| Q |
37 |
caactcattggcctctcgcatactatgttcatcaaccccataagcttctcctattgacttaaccgtttcaccatagttcaccatgtgaacgagtaaggag |
136 |
Q |
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| T |
30114937 |
caactcatttgcctctaatatgctttgttcatcaacaccataagcctctcctatagacttaacagtttcaccatagttcactatgtaaaccagcaaggaa |
30114838 |
T |
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| Q |
137 |
gtaaccccttttgccgtcaggtttgctgtgggacaagcacatagtattggaactgtgagctcagcatcaagttgaattaagacaggagcatagtagttct |
236 |
Q |
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| T |
30114837 |
gtgatccctttcgccatctgtgttgttgtaggacaagcacaaagtactggaactgttacctcggcaccaattgcaatgttttcagaagcataataattct |
30114738 |
T |
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| Q |
237 |
gacccatcaatgcctggcaggttgtaaggccttggtaagtttcttttaccaactcatagtaagtatcattctgctttacagtgtaagatgtactatgctg |
336 |
Q |
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||||| |||| || || || ||||| |||| |||||||||||| |||||||| | | |||| |||||| | | |||||||||| || |||| || |
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| T |
30114737 |
gacccttcaaagcttgacatgttgtgaggctttggtaagtttcatttaccaagtgaaagtatgtatcacctttttggacagtgtaaggagtgttatgttg |
30114638 |
T |
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| Q |
337 |
gtagatatttccatcacatgaacaaaagactgggacaatgattgatttatttgaaggaatcttttcatttaaagggatcttattgattgaggctatggct |
436 |
Q |
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||||||||||||| |||||| || |||| ||||||||||||| |||||| | |||| ||||||||| | ||| || |||||||||||||||| |
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| T |
30114637 |
gtagatatttccagaacatgagcacaagatagggacaatgattgttttattggttggaagtttttcatttcttgagatgttgttgattgaggctatggtc |
30114538 |
T |
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| Q |
437 |
gatgcttcagagcgaaga |
454 |
Q |
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|||||||| |||| |||| |
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| T |
30114537 |
gatgcttctgagccaaga |
30114520 |
T |
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