View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1645_high_6 (Length: 336)
Name: NF1645_high_6
Description: NF1645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1645_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 329
Target Start/End: Original strand, 1355369 - 1355680
Alignment:
| Q |
18 |
agtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatgcaaaag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1355369 |
agtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatgctaaag |
1355468 |
T |
|
| Q |
118 |
agttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatagggttccttccaattccaacaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1355469 |
agttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatagggttccttccaattccaacaa |
1355568 |
T |
|
| Q |
218 |
ctaagtagactagtaattttgtatcatgtgtttcccttcttctcataatcaatatatttattgtgatttttgttttgcaataaaaggttttattttagtt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1355569 |
ctaagtagactagtaattttgtatcatgtgtttcccttcttctcataatcaatatatttattgtgatttttgttttgcaataaaaggttttattttagtt |
1355668 |
T |
|
| Q |
318 |
tccttcatctca |
329 |
Q |
| |
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|||||| ||||| |
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| T |
1355669 |
tccttcttctca |
1355680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 1362255 - 1362465
Alignment:
| Q |
18 |
agtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatgcaaaag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1362255 |
agtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatgctaaag |
1362354 |
T |
|
| Q |
118 |
agttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatagggttccttccaattccaacaa |
217 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1362355 |
agttggggaaagttttcagttcaaaagatattcataatcaatatattgatgatctcattgctgctctttacaagtataggaatccttccaattccaacaa |
1362454 |
T |
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| Q |
218 |
ctaagtagact |
228 |
Q |
| |
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||| ||||||| |
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| T |
1362455 |
ctaggtagact |
1362465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 20493042 - 20493182
Alignment:
| Q |
20 |
tgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatgcaaaagag |
119 |
Q |
| |
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|||| |||||||||| ||||||||||||||| | || | |||||||||||||||| ||||||||||||||||||| | || || ||||| ||||| |
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| T |
20493042 |
tgagcaagatgggtcctttactagggactctatagccaaaacattgaggttggcaatagtggatgaggaaggaagtatctatagaaaaaatgccaaagat |
20493141 |
T |
|
| Q |
120 |
ttggggaaggttttcagttcaaaagatattcacaatcaata |
160 |
Q |
| |
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|||| ||| ||||| ||||||||||| |||||||| |||| |
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| T |
20493142 |
atgggaaagattttcggttcaaaagatcttcacaatgaata |
20493182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 11532218 - 11532409
Alignment:
| Q |
18 |
agtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatgcaaaag |
117 |
Q |
| |
|
|||||| |||| ||||| |||||||||||||| || || | |||||||||||| ||| |||||||||||||||||| | ||| |||||||| |||| |
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| T |
11532218 |
agtgagaaagacgggtcctttactagggactcagtagccaaaacattgaggttggtaataatggatgaggaaggaagtacgtacagaaacaatgccaaag |
11532317 |
T |
|
| Q |
118 |
agttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatagggttccttccaat |
209 |
Q |
| |
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| |||| ||||||||||||||||||||| ||||||||||||| ||||| || ||||||| ||||||| | |||||||| |||| ||||||| |
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| T |
11532318 |
atatgggaaaggttttcagttcaaaagatcttcacaatcaatacattgaagattttattgttgctcttcaaaagtatagagttcattccaat |
11532409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 12846883 - 12847066
Alignment:
| Q |
18 |
agtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatgcaaaag |
117 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| ||| || | |||||||||| ||||| |||||| ||||||| || || ||||||||||||||||| |
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| T |
12846883 |
agtgaggaggatgggtcctttactagggactttgtagccctaacattgaggttagcaataatggatgccgaaggaattatttacaggaacaatgcaaaag |
12846982 |
T |
|
| Q |
118 |
agttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatagggttc |
201 |
Q |
| |
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|| |||| ||| |||||||||||||||| ||||||| |||| ||||| || || |||||||||||| | ||||||||||||| |
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| T |
12846983 |
agatgggcaagattttcagttcaaaagaacttcacaaaaaatacattgaagatttcattgctgctcttcaaaagtatagggttc |
12847066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 61 - 160
Target Start/End: Original strand, 14589371 - 14589470
Alignment:
| Q |
61 |
cattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaata |
160 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||| || |||||||||||| ||||| |||| |||||| | |||||||||||| |||||||| |||| |
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| T |
14589371 |
cattgaggttggtaatagtggatgaggaaggaagtatttacaggaacaatgccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatgaata |
14589470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 61 - 160
Target Start/End: Original strand, 14623029 - 14623128
Alignment:
| Q |
61 |
cattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaata |
160 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||| || |||||||||||| ||||| |||| |||||| | |||||||||||| |||||||| |||| |
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| T |
14623029 |
cattgaggttggtaatagtggatgaggaaggaagtatttacaggaacaatgccaaagacatgggaaaggttgtgagttcaaaagatcttcacaatgaata |
14623128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 29954905 - 29955088
Alignment:
| Q |
18 |
agtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagta-gtttcaggaacaatgcaaaa |
116 |
Q |
| |
|
|||||| |||||||||| |||||||||||||| | || || |||||||||||||||| ||||||||||||||||||| || || |||| ||||| ||| |
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| T |
29954905 |
agtgagcaagatgggtcctttactagggactcgatagcccaaacattgaggttggcaatagtggatgaggaaggaagtatgtatc-ggaataatgccaaa |
29955003 |
T |
|
| Q |
117 |
gagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatagggttc |
201 |
Q |
| |
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|| ||| ||||||||||||||||||||| |||||||| |||| ||| | || | |||||||||||| | |||||||| |||| |
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| T |
29955004 |
gatatggaaaaggttttcagttcaaaagatcttcacaatgaatacattaaagatgtcattgctgctcttcaaaagtatagagttc |
29955088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 51369548 - 51369360
Alignment:
| Q |
18 |
agtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagtagtttcaggaacaatgcaaaag |
117 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||| || | |||||||||||| ||| |||||||||||||| || | | |||||| ||||| |||| |
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|
| T |
51369548 |
agtgagcaagatgggtcctttactagggactctgtagccaaaacattgaggttggtaatagtggatgaggaaggtagcacgtgcaggaaaaatgctaaag |
51369449 |
T |
|
| Q |
118 |
agttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatagggttccttcc |
206 |
Q |
| |
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| |||| || ||||||||||||||||| ||||||||||||| ||| | || || || ||||||||| | ||| |||| |||| |||| |
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| T |
51369448 |
atatgggaaaaattttcagttcaaaagatcttcacaatcaatacattaaagatttaatcgctgctcttcaaaagcatagagttcattcc |
51369360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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