View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1645_high_7 (Length: 329)
Name: NF1645_high_7
Description: NF1645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1645_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 18677539 - 18677467
Alignment:
| Q |
1 |
gtatttaacacgttctaataattctcatgaagctggcaaggtaacacaataaaataaataagcaccggcgtgc |
73 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18677539 |
gtatttaacacgttctaataattctcatgaagctggcaaggtaacacaataaaataaataagcaccggcgtgc |
18677467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 258 - 312
Target Start/End: Complemental strand, 18675036 - 18674982
Alignment:
| Q |
258 |
aaattttgaacaaaatggttaaggattgaagtatatatgactttatgctactcct |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18675036 |
aaattttgaacaaaatggttaaggattgaagtatatatgactttatgctactcct |
18674982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University