View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1645_low_1 (Length: 631)
Name: NF1645_low_1
Description: NF1645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1645_low_1 |
 | |
|
| [»] scaffold0692 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 25)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 377
Target Start/End: Original strand, 10605211 - 10605571
Alignment:
| Q |
17 |
ctttttctacatgttttagagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaattcttaccggta |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
10605211 |
ctttttctacatgtttcagagtatggaatgggttctgaagtgtctatatgtggtgacatgtatagctttggaatcctgatgttggaaatacttactggta |
10605310 |
T |
|
| Q |
117 |
gaagacccgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaaacgattttggaccgacgtct |
216 |
Q |
| |
|
| |||||| || ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| || || |
|
|
| T |
10605311 |
ggagacccactgatgaagtttttcaagatggtcaaaatctgcataactttgttgcaacttcatttcctgataatattaaagagattttggacccacacct |
10605410 |
T |
|
| Q |
217 |
tatatcaagagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggactt |
316 |
Q |
| |
|
| || |||||||||||||||||||||||||| ||| ||| | |||||||| |||||| |||||||| | |||||||||||||||||| ||||||||| |
|
|
| T |
10605411 |
tgtaacaagagatgtagaagtagcaatagaaaatggaaaccatacgaatcttattccaagggtagaggaatccttagtttcactttttagaattggactt |
10605510 |
T |
|
| Q |
317 |
atttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta |
377 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||| ||||||| |||| |||||||| |
|
|
| T |
10605511 |
atttgttcaatggaatcaccgaaagaaagaatgaatattatggatgttactaaagagctta |
10605571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 10746773 - 10746406
Alignment:
| Q |
17 |
ctttttctacatgttttagagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaattcttaccggta |
116 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||| | |||||| |||||||||||||||||||||||| ||||||| ||||| |||| |
|
|
| T |
10746773 |
cttttgctacatgttttagagtatggaatgggttctgaagtgtccacatatggtgatatgtatagctttggaatccttatgctggaaatgcttactggta |
10746674 |
T |
|
| Q |
117 |
gaagacccgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaaacgattttggaccgacgtct |
216 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| || || ||||||| | ||| |
|
|
| T |
10746673 |
gaagacccactgatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatatcgtttcctgataatcttataaatatcttggacccgcatct |
10746574 |
T |
|
| Q |
217 |
tatatcaagagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggactt |
316 |
Q |
| |
|
| ||||||||||| ||| ||||||||| ||| ||||||||||| ||||| |||| | ||||| ||||||||||||||||||||||||||| |
|
|
| T |
10746573 |
tctatcaagagat---------gcagtagaagatggaaacaatgagaatcttattccaactgtaaaagagtgtttagtttcactttttaggattggactt |
10746483 |
T |
|
| Q |
317 |
atttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaaggc |
393 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
10746482 |
atttgtacaattgaatcaccaaaagaaagaatgaatactgtggatgtcactagagagctcaacataatcagaaaggc |
10746406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 24 - 393
Target Start/End: Original strand, 10581461 - 10581830
Alignment:
| Q |
24 |
tacatgttttagagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaattcttaccggtagaagacc |
123 |
Q |
| |
|
|||||| |||||||||||| ||||||| |||||| || | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10581461 |
tacatgctttagagtatgggatgggttctgaagtatctgcatgtggtgacatgtatagctttggaatccttatgttggaaatgcttaccggtagaagacc |
10581560 |
T |
|
| Q |
124 |
cgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaaacgattttggaccgacgtcttatatca |
223 |
Q |
| |
|
| || || | | ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| | |||||||||| || |||| ||||| |
|
|
| T |
10581561 |
cactgatcacgcttttgaagatggtcaaaatctgcataactttgttgcaatatcatttcctgctaatcttaagaaaattttggacccacatcttttatca |
10581660 |
T |
|
| Q |
224 |
agagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgta |
323 |
Q |
| |
|
|| || | |||||||| ||| ||||||| |||| ||||||||||| |||| || | ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10581661 |
agggacgcagaagtagaaatggaagatggaaatcttgagaatcttattccagctgcaaaggagtgcttagtttcactttttaggattggacttatgtgtt |
10581760 |
T |
|
| Q |
324 |
caatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaaggc |
393 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| |||||| || ||||||||| |||||||||||||| |
|
|
| T |
10581761 |
caatggagtcaccaaaagaaagactgaatattgaggatgtatgtatagagcttagtataatcagaaaggc |
10581830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 24 - 393
Target Start/End: Original strand, 10565469 - 10565838
Alignment:
| Q |
24 |
tacatgttttagagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaattcttaccggtagaagacc |
123 |
Q |
| |
|
||||||||||||||||||| |||||| |||||| ||||| |||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
10565469 |
tacatgttttagagtatgggatgggtgctgaagtatccacatgtggtgatatgtatagctttggaatctttatgttggaaatgcttaccggtagaagacc |
10565568 |
T |
|
| Q |
124 |
cgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaaacgattttggaccgacgtcttatatca |
223 |
Q |
| |
|
| || || | | ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| | ||||||||||| || |||| ||||| |
|
|
| T |
10565569 |
cactgatcacgcttttgaagatggtcaaaatctgcataactttgttgcaatatcatttcctggtaatcttaagaagattttggacccacatcttttatca |
10565668 |
T |
|
| Q |
224 |
agagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgta |
323 |
Q |
| |
|
| |||| |||||| | ||| |||||| |||| ||||||||||| |||| || | ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10565669 |
atggatgcagaagttgaaatgaaagatggaaatcatgagaatcttattccacctgcaaaggagtgcttagtttcactttttaggattggacttatgtgtt |
10565768 |
T |
|
| Q |
324 |
caatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaaggc |
393 |
Q |
| |
|
||||||| ||||||||||||||||| || |||| || ||| |||||||||||| |||||||||||||| |
|
|
| T |
10565769 |
caatggagtcaccaaaagaaagaatcaacattgaggttgtatgtagagagcttagtataatcagaaaggc |
10565838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 377
Target Start/End: Original strand, 10612169 - 10612529
Alignment:
| Q |
17 |
ctttttctacatgttttagagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaattcttaccggta |
116 |
Q |
| |
|
||||| |||||||||||||||||||| |||||| |||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10612169 |
cttttgctacatgttttagagtatgggatgggtgctgaagtatccacatgtggtgatatgtatagctttggaatccttatgttggaaatgcttaccggta |
10612268 |
T |
|
| Q |
117 |
gaagacccgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaaacgattttggaccgacgtct |
216 |
Q |
| |
|
|||||||| || |||| | |||||||||| ||||||||| |||||||||||||||| ||||||| |||||||| || ||| ||||||| || ||| |
|
|
| T |
10612269 |
gaagacccactgatgaggcatttgaagatgatcaaaatctacataactttgttgcaacactgtttcctgctaatcttataaagatcttggacccacatct |
10612368 |
T |
|
| Q |
217 |
tatatcaagagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggactt |
316 |
Q |
| |
|
| | |||| | ||| |||||||| |||| |||||| ||| |||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10612369 |
tgtgtcaaaatatgcagaagtagaaatacaagatggaaagagtgagaatcttattccaagtttaaaggagtgcttagtttcactttttaggattggactt |
10612468 |
T |
|
| Q |
317 |
atttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta |
377 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
10612469 |
ctttgttcaatggaatcacccaaagaaagaatgaatattgtggatgttactagagaactta |
10612529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 17 - 391
Target Start/End: Complemental strand, 10716727 - 10716365
Alignment:
| Q |
17 |
ctttttctacatgttttagagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaattcttaccggta |
116 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10716727 |
cttttgctacatgtttcagagtatggaatgggttctgaagtgtccacatgtggtgacatgtatagctttggaatccttatgttggaaatgcttaccggta |
10716628 |
T |
|
| Q |
117 |
gaagacccgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaaacgattttggaccgacgtct |
216 |
Q |
| |
|
|||||||| || ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||| || ||||||||| | || ||| |
|
|
| T |
10716627 |
gaagacccactgatgaattttttcaagatggtcaaaatctgcataactttgttgcatcttcatttcctgacaatcttataaagattttggatccacatct |
10716528 |
T |
|
| Q |
217 |
tatatcaagagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggactt |
316 |
Q |
| |
|
| |||||||||||| ||||| || |||| | |||||||||| ||| ||| | || ||||||||||| ||||| |||||||||||| |
|
|
| T |
10716527 |
tgtatcaagagatgcagaag-----atggaagcata-------gagaatcttattcctgcggtaaatgaatgcttagtttctcttttcaggattggactt |
10716440 |
T |
|
| Q |
317 |
atttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaag |
391 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| | ||||||||||||| |
|
|
| T |
10716439 |
gtttgtacaatggaatcaccgatagaaagaatgaatattatggatgtcactagagagctcaacataatcagaaag |
10716365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 16 - 393
Target Start/End: Complemental strand, 10740177 - 10739800
Alignment:
| Q |
16 |
actttttctacatgttttagagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaattcttaccggt |
115 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||| ||||||||| || | ||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10740177 |
acttttgctgcatgttttagagtatggaatgggttctgaagtgtcaacatctggtgacatgtatagctttggaatccttatgttggaaatacttaccggt |
10740078 |
T |
|
| Q |
116 |
agaagacccgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaaacgattttggaccgacgtc |
215 |
Q |
| |
|
||||||||| || ||||||||||| |||||||||||||||| ||||||||||| |||| ||| ||||||| ||| ||| | ||||||||||| || || |
|
|
| T |
10740077 |
agaagacccactgatgaagtttttcaagatggtcaaaatctacataactttgtagcaacttcgtttcctggtaacattatagagattttggacccacatc |
10739978 |
T |
|
| Q |
216 |
ttatatcaagagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggact |
315 |
Q |
| |
|
|| | ||||||||||||||||| ||||| |||||| ||| | | || ||| ||| | |||||||| | |||||||||||||||||| |||||||| |
|
|
| T |
10739977 |
ttgaagcaagagatgtagaagtaacaatacaagatggaaaccgagcgattctagttcctggggtagaggaatccttagtttcactttttagaattggact |
10739878 |
T |
|
| Q |
316 |
tatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaaggc |
393 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||| ||||||| | | |||||||| || |||| ||||||| |
|
|
| T |
10739877 |
tatttgttcaatggaatcaccgaaagaaagaatgaatattatggatgttaatcaagagcttaacacaatccgaaaggc |
10739800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 24 - 377
Target Start/End: Complemental strand, 10762584 - 10762231
Alignment:
| Q |
24 |
tacatgttttagagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaattcttaccggtagaagacc |
123 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| || | |||||||||||||||||||||| ||||||||||| |||| ||||| ||||||||||| |
|
|
| T |
10762584 |
tacatgttttagagtatggaatgggttctgaagtgtcaacatctggtgacatgtatagctttggagtccttatgttgaaaatacttactggtagaagacc |
10762485 |
T |
|
| Q |
124 |
cgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaaacgattttggaccgacgtcttatatca |
223 |
Q |
| |
|
| || ||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| ||| ||| | |||||||||| || |||| | || |
|
|
| T |
10762484 |
cactgatgaagtttttcaagatggtcaaaatctgcataactttgtagcagcttcatttcctggtaacattatagatattttggacccacatcttgaagca |
10762385 |
T |
|
| Q |
224 |
agagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgta |
323 |
Q |
| |
|
||||||||||||||| ||| | |||||| ||| | | || ||||| | || | |||||||| | |||||||||||||||||| ||||||||||||||| |
|
|
| T |
10762384 |
agagatgtagaagtaacaaaacaagatggaaaccgagcgattcttattgcaggggtagaggaatccttagtttcactttttagaattggacttatttgtt |
10762285 |
T |
|
| Q |
324 |
caatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta |
377 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||| ||| |||||||| |
|
|
| T |
10762284 |
caatggaatcaccgaaagaaagaatgaatattatggatgttactcaagagctta |
10762231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 412 - 624
Target Start/End: Complemental strand, 11048241 - 11048013
Alignment:
| Q |
412 |
acttgacactttttctcctcattaattgattgcatatcaaaattcctaacctacaaaatacaaaggcaataacgagcttcctcttgatttgaatttcagg |
511 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11048241 |
acttaacactttttctcctcattaattgattgcatatcaaaatttctaacctacaaaatacaaaggcaataacaagcttcctcttgatttgaatttcagg |
11048142 |
T |
|
| Q |
512 |
tgttcacact----------------aaatttataaggtcatttgtgggagaagaagtgtctagctggaagcgtgtatgagtgtgttcaatgaatttggt |
595 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11048141 |
tgttcacactcataagtaattgaactaaatttataaggtcatttgtgggagaagaagtgtctagctggaagcgtgtatgagtgtgttcaatgaatttggt |
11048042 |
T |
|
| Q |
596 |
ttgcaacattaaattatgtgtgatgatgt |
624 |
Q |
| |
|
|||||| ||||||||||||||||| |||| |
|
|
| T |
11048041 |
ttgcaagattaaattatgtgtgattatgt |
11048013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 11048413 - 11048241
Alignment:
| Q |
16 |
actttttctacatgttttagagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaattcttaccggt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11048413 |
actttttctacatgttttagagtatggaatgggttctgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaatgcttaccggt |
11048314 |
T |
|
| Q |
116 |
agaagacccgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgata |
188 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11048313 |
agaagacccacccatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcacttcctgata |
11048241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 30 - 351
Target Start/End: Complemental strand, 10651940 - 10651619
Alignment:
| Q |
30 |
ttttagagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaattcttaccggtagaagacccgctaa |
129 |
Q |
| |
|
||||||||||||||||||||| |||| | ||||| | |||||||||||||||||| || | |||||||||||||| |||||||| |||||||| | | |
|
|
| T |
10651940 |
ttttagagtatggaatgggttctgaaatatccacatatggtgacatgtatagcttcggggtgcttatgttggaaatgcttaccggaagaagaccaacaga |
10651841 |
T |
|
| Q |
130 |
tgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaaacgattttggaccgacgtcttatatcaagagat |
229 |
Q |
| |
|
|| | | |||||||| ||||||||| |||||| ||||||| ||||||||||||| ||||| ||| | ||||||||| | || |||| || ||||| || |
|
|
| T |
10651840 |
tggaatgtttgaagaaggtcaaaatttgcatatgtttgttggaatttcatttcctaataatattatacagattttggatccacatcttgtaccaagaaat |
10651741 |
T |
|
| Q |
230 |
gtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatgg |
329 |
Q |
| |
|
| ||||| || ||||||||| | ||| |||| ||| | | ||||| ||||||| |||| |||||||||||||| |||||||||||| |||| || || |
|
|
| T |
10651740 |
gaagaagaagaaatagaagaaggaaactgtggaaatttcactccaactgtagagaagtgtttagtttcacttttcaggattggacttgcttgttcagtga |
10651641 |
T |
|
| Q |
330 |
aatcaccaaaagaaagaatgaa |
351 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
10651640 |
aatcaccaaaagaaagaatgaa |
10651619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 33 - 386
Target Start/End: Original strand, 7193481 - 7193834
Alignment:
| Q |
33 |
tagagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaattcttaccggtagaagacccgctaatga |
132 |
Q |
| |
|
|||| ||||||||||||| |||||| || || | |||||| ||||||||||| || || ||| ||||||||||||||||||| || ||||| | |||| |
|
|
| T |
7193481 |
tagaatatggaatgggttctgaagtatctacatatggtgatatgtatagcttcgggatgcttttgttggaaattcttaccggaaggagaccggtagatga |
7193580 |
T |
|
| Q |
133 |
agtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaaacgattttggaccgacgtcttatatcaagagatgta |
232 |
Q |
| |
|
| | ||||| ||||||||||||| | || ||||||| |||||| || ||| ||||||||| | |||||||||| | |||| || ||||| || || |
|
|
| T |
7193581 |
aatgtttgacaatggtcaaaatctacgtatttttgttgaaatttcgttgcctaataatcttatacatattttggacccaaatcttgtaccaagaaatata |
7193680 |
T |
|
| Q |
233 |
gaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaat |
332 |
Q |
| |
|
|||| | |||||||||||| ||| ||| ||| | | ||||| ||||||| ||||| |||||||||||||||||||||||||| |||| || |||||| |
|
|
| T |
7193681 |
gaagcaacaatagaagatggaaacagtggaaatttcactccaaatgtagagaagtgcgtagtttcactttttaggattggacttgcttgttcagtggaat |
7193780 |
T |
|
| Q |
333 |
caccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatca |
386 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||| | |||||||||| |
|
|
| T |
7193781 |
caccaaaagaaagaatgaatatagtggatgtcatcagagacttaagcataatca |
7193834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 30 - 395
Target Start/End: Complemental strand, 10659823 - 10659458
Alignment:
| Q |
30 |
ttttagagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaattcttaccggtagaagacccgctaa |
129 |
Q |
| |
|
||||||||||||||||||||| ||| | ||||| |||||||||||||||||| || | ||| |||||||||| |||||||| |||||||| | | |
|
|
| T |
10659823 |
ttttagagtatggaatgggttctgagatatccacacatggtgacatgtatagcttcggggtgcttctgttggaaatgcttaccggaagaagaccaacgga |
10659724 |
T |
|
| Q |
130 |
tgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaaacgattttggaccgacgtcttatatcaagagat |
229 |
Q |
| |
|
|||| | |||||||| |||||||||||||||| ||||||| |||||||||||| ||||| || | ||||||||||| || |||| || ||||| || |
|
|
| T |
10659723 |
tgaaatgtttgaagagggtcaaaatctgcatatatttgttgaaatttcatttccaaataatattttacagattttggacccacatcttgtaccaagaaat |
10659624 |
T |
|
| Q |
230 |
gtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatgg |
329 |
Q |
| |
|
| ||||| ||||||||| | ||| ||| ||| | ||||| |||||| |||||||||||||||||||| ||||||||||| ||| || || |
|
|
| T |
10659623 |
gaagaagccaaaatagaagaaggaaagagtggaaatttccctccaatcgtagagaagtgcttagtttcactttttcggattggacttgcatgttcagtga |
10659524 |
T |
|
| Q |
330 |
aatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaaggcat |
395 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| |||||| | |||||||||| |||||||| |
|
|
| T |
10659523 |
aatcaccaaaagaaagaatgaatatagttgatgtcaccagagagttaagcataatcaaaaaggcat |
10659458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 27 - 375
Target Start/End: Complemental strand, 9836069 - 9835721
Alignment:
| Q |
27 |
atgttttagagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaattcttaccggtagaagacccgc |
126 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || || | ||||||||||||||||||||| || || |||||||||| |||| || |||||||| | |
|
|
| T |
9836069 |
atgttttagagtatggaatgggttctgaagcatcaacatatggtgacatgtatagctttgggatgctcgtgttggaaatgattactggaagaagacctac |
9835970 |
T |
|
| Q |
127 |
taatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaaacgattttggaccgacgtcttatatcaaga |
226 |
Q |
| |
|
||||| ||||| |||||||||||||| | || |||| || || |||||| ||| ||||||| | ||||||||||| || | || || ||||| |
|
|
| T |
9835969 |
agatgaaagatttgaggatggtcaaaatctacgtacgtttgctgaaagttcattagctggtaatctttcacagattttggaccaacattttgtaccaaga |
9835870 |
T |
|
| Q |
227 |
gatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgtacaa |
326 |
Q |
| |
|
|||| ||||| |||||||||||||| |||| |||||||||||| |||| |||| || | |||||||||||| |||| |||||||||||| ||| ||| |
|
|
| T |
9835869 |
gatgaagaagcagcaatagaagatggaaatagtgagaatcttattccagctgtaaagaattgcttagtttcagttttaaggattggacttgcctgttcaa |
9835770 |
T |
|
| Q |
327 |
tggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagct |
375 |
Q |
| |
|
||||||||||||||||||||||| || || ||||| ||||||||||| |
|
|
| T |
9835769 |
gagaatcaccaaaagaaagaatgaacatagtagatgttactagagagct |
9835721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 67 - 375
Target Start/End: Complemental strand, 9827660 - 9827352
Alignment:
| Q |
67 |
tggtgacatgtatagctttggaatccttatgttggaaattcttaccggtagaagacccgctaatgaagtttttgaagatggtcaaaatctgcataacttt |
166 |
Q |
| |
|
||||||||||||||||||||| || || |||||||||| |||| || |||||||| | ||||| ||||| |||||||||||||| | || ||| |
|
|
| T |
9827660 |
tggtgacatgtatagctttgggatgctcgtgttggaaatgattactggaagaagacctacagatgaaagatttgaggatggtcaaaatctacgtacgttt |
9827561 |
T |
|
| Q |
167 |
gttgcaatttcatttcctgataatcttaaaacgattttggaccgacgtcttatatcaagagatgtagaagtagcaatagaagatgaaaattgtgagaatc |
266 |
Q |
| |
|
| || || |||||| ||||||||||| | ||||||| ||| || | || || ||||||||| ||||| |||||||||||||| |||| ||||||||| |
|
|
| T |
9827560 |
gctgaaagttcattagctgataatctttcacagattttgaaccaacattttgtaccaagagatgaagaagcagcaatagaagatggaaatagtgagaatc |
9827461 |
T |
|
| Q |
267 |
ttaatccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcac |
366 |
Q |
| |
|
||| |||| |||| || | |||||||||||| |||| |||||||||||| ||| ||| ||||||||||||||||||||||| || || ||||| || |
|
|
| T |
9827460 |
ttattccagctgtaaagaattgcttagtttcagttttaaggattggacttgcctgttcaagagaatcaccaaaagaaagaatgaacatagtagatgttac |
9827361 |
T |
|
| Q |
367 |
tagagagct |
375 |
Q |
| |
|
||||||||| |
|
|
| T |
9827360 |
tagagagct |
9827352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 33 - 350
Target Start/End: Complemental strand, 10588194 - 10587895
Alignment:
| Q |
33 |
tagagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaattcttaccggtagaagacccgctaatga |
132 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| | ||||||||||||||||||||| || |||||||||||||| | ||||| ||||||||| | |||| |
|
|
| T |
10588194 |
tagagtatggaatgggttctgaagtatccacatctggtgacatgtatagctttgggatgcttatgttggaaatgatcaccggaagaagacccacagatga |
10588095 |
T |
|
| Q |
133 |
agtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaaacgattttggaccgacgtcttatatcaagagatgta |
232 |
Q |
| |
|
| | |||||||||||||||||||| |||| ||||||| || |||||||| |||||||||| | ||||||||||| || |||| |
|
|
| T |
10588094 |
aatgtttgaagatggtcaaaatctacatatgtttgttgaaagttcatttcaagataatcttatacagattttggacccacatctt--------------- |
10588010 |
T |
|
| Q |
233 |
gaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaat |
332 |
Q |
| |
|
|| |||||||||||| | || ||||||||||| |||| | ||| ||||||||||||||||| | |||||||||||| |||| ||||||||| |
|
|
| T |
10588009 |
---gtttcaatagaagatggacataatgagaatcttattccagctaaggagaagtgcttagtttcacttctaaggattggacttgcttgttcaatggaat |
10587913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 30 - 392
Target Start/End: Original strand, 10559370 - 10559732
Alignment:
| Q |
30 |
ttttagagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaattcttaccggtagaagacccgctaa |
129 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||| || ||||| |||||||| |||| || |||||||| || | |
|
|
| T |
10559370 |
ttttagagtatggaatgggttctgaagtttccacacatggtgacatgtatagctttgggatgcttatattggaaatgattacaggaagaagaccaactga |
10559469 |
T |
|
| Q |
130 |
tgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaaacgattttggaccgacgtcttatatcaagagat |
229 |
Q |
| |
|
|||| | ||| ||||||||||||||||||| | ||||| || |||||||||| ||||| ||| ||||||||||| || | || || ||||||| |
|
|
| T |
10559470 |
tgaaatgtttttagatggtcaaaatctgcatttgtatgttgaaaattcatttcctaataatgttatgcagattttggacccacatattgtaccaagagaa |
10559569 |
T |
|
| Q |
230 |
gtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatgg |
329 |
Q |
| |
|
| |||| ||||||||||||| || ||||||||| | || || | | | |||||||||||| ||||||||||||||| ||| | ||| |
|
|
| T |
10559570 |
gaggaagcagcaatagaagatagaagcaagaagaatcttatttcattaatacataaatccttagtttcactctttaggattggacttgcatgttcggtgg |
10559669 |
T |
|
| Q |
330 |
aatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaagg |
392 |
Q |
| |
|
|||| |||| | ||||||||||||| |||||||||||||||| || | ||| |||||||||| |
|
|
| T |
10559670 |
aatcgccaacacaaagaatgaatatattggatgtcactagagaactaaacatgatcagaaagg |
10559732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 30 - 391
Target Start/End: Complemental strand, 19605604 - 19605243
Alignment:
| Q |
30 |
ttttagagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaattcttaccggtagaagacccgctaa |
129 |
Q |
| |
|
||||||||||||||||| ||| |||||| ||||| |||||| |||||||||||||| || ||||| |||||||| ||||| || |||||||| | | |
|
|
| T |
19605604 |
ttttagagtatggaatgagttctgaagtttccacacatggtgatatgtatagctttgggatgcttatattggaaatgcttacgggaagaagaccgacgga |
19605505 |
T |
|
| Q |
130 |
tgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaaacgattttggaccgacgtcttatatcaagagat |
229 |
Q |
| |
|
||| | ||| ||||||||||||||||| | | ||||| |||||||||||||||||| ||| | ||||||||||| || || || |||||| | |
|
|
| T |
19605504 |
tgacatgtttacagatggtcaaaatctgcgtttgtatgttgaaatttcatttcctgataacattatgaagattttggacccgtgtattgtaccaagagtt |
19605405 |
T |
|
| Q |
230 |
gtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatgg |
329 |
Q |
| |
|
| ||||| | ||||||| |||| || | | |||||| | ||| | || | ||||| ||||| ||||||||||||||||| ||| | |||| |
|
|
| T |
19605404 |
gaagaagcaacaatagatgatggaagcaatcggcatcttatttcaacgatggataaatgctttgtttccatttttaggattggacttgcctgttcgatgg |
19605305 |
T |
|
| Q |
330 |
aatcaccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaag |
391 |
Q |
| |
|
|||| || ||||||||||||||||| | |||| |||||||||||| | ||||||||||||| |
|
|
| T |
19605304 |
aatctcccaaagaaagaatgaatatagaagatgccactagagagctaaacataatcagaaag |
19605243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 214 - 310
Target Start/End: Complemental strand, 10760892 - 10760796
Alignment:
| Q |
214 |
tcttatatcaagagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggatt |
310 |
Q |
| |
|
|||| |||||||||||||| |||||| |||| |||||| ||| || |||||||| ||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
10760892 |
tcttgtatcaagagatgtaaaagtagaaatacaagatggaaacaatgggaatcttattccaagtgtagagaagtgcttagtttcactgtttaggatt |
10760796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 9825523 - 9825604
Alignment:
| Q |
30 |
ttttagagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaattcttac |
111 |
Q |
| |
|
|||||||||||||||||| || | |||| ||||| | |||||||||||||||||||||||| | ||| |||||||| ||||| |
|
|
| T |
9825523 |
ttttagagtatggaatggattctaaagtttccacttatggtgacatgtatagctttggaattcctatattggaaatgcttac |
9825604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 277 - 363
Target Start/End: Original strand, 10551520 - 10551606
Alignment:
| Q |
277 |
tgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgt |
363 |
Q |
| |
|
||||||| | || ||| |||||||| ||||||||| |||| |||| || |||||||||||||||||||||||||||| || ||||| |
|
|
| T |
10551520 |
tgtagagaaatgtttactttcacttcttaggattgcactttcttgttcagtggaatcaccaaaagaaagaatgaatatggttgatgt |
10551606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 10551280 - 10551336
Alignment:
| Q |
34 |
agagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaat |
90 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
10551280 |
agagtatggaatgggttttgaggtgtcaactgaaggtgacatgtatagctttggaat |
10551336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 513
Target Start/End: Original strand, 10565949 - 10566012
Alignment:
| Q |
450 |
aaaattcctaacctacaaaatacaaaggcaataacgagcttcctcttgatttgaatttcaggtg |
513 |
Q |
| |
|
||||||||||| ||||||||||||| || ||||| | ||| ||||||||||||||||||||| |
|
|
| T |
10565949 |
aaaattcctaaactacaaaatacaatggtaataatggatttcttcttgatttgaatttcaggtg |
10566012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 390
Target Start/End: Complemental strand, 9849680 - 9849623
Alignment:
| Q |
333 |
caccaaaagaaagaatgaatattgtggatgtcactagagagcttagcataatcagaaa |
390 |
Q |
| |
|
|||| |||| ||||||||||| ||||||||||||||||||| | |||||||||||| |
|
|
| T |
9849680 |
caccgaaagcaagaatgaatacaatggatgtcactagagagctaaacataatcagaaa |
9849623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 10216523 - 10216487
Alignment:
| Q |
24 |
tacatgttttagagtatggaatgggttttgaagtgtc |
60 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
10216523 |
tacatattttagagtatggaatgggtgttgaagtgtc |
10216487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 24 - 377
Target Start/End: Original strand, 12958523 - 12958876
Alignment:
| Q |
24 |
tacatgttttagagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaattcttaccggtagaagacc |
123 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
12958523 |
tacatgttttagagtatgggatgggttcagaagtatccacatgtggtgacatgtatagctttggaatccttatgctggaaatgcttactggtagaagacc |
12958622 |
T |
|
| Q |
124 |
cgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaaacgattttggaccgacgtcttatatca |
223 |
Q |
| |
|
| || ||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | || ||| ||||| | || |||| || || |
|
|
| T |
12958623 |
cactgatgaactttttgaagatggtcaaaatctgcataactttgttacaaattcatttcctgataatctaataaagatgttggatccacatcttttacca |
12958722 |
T |
|
| Q |
224 |
agagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgta |
323 |
Q |
| |
|
|||| || ||| | ||||| |||||||| |||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
12958723 |
agagctgaagatggagcaagagaagatggaaatcatgagattcttattccaactgtagaggagtgcttagtttcactttttaggattggacttttatgtt |
12958822 |
T |
|
| Q |
324 |
caatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta |
377 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12958823 |
cattggaatcaccaaaagaaagaatgaatattgtcgatgtcactagagagctta |
12958876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 24 - 377
Target Start/End: Original strand, 12907635 - 12907988
Alignment:
| Q |
24 |
tacatgttttagagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaattcttaccggtagaagacc |
123 |
Q |
| |
|
||||| ||||||||||||| |||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
12907635 |
tacatattttagagtatggggtgggttcagaagtatccacttgtggtgacatgtatagctttggaatccttatgctggaaatgcttactggtagaagacc |
12907734 |
T |
|
| Q |
124 |
cgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaaacgattttggaccgacgtcttatatca |
223 |
Q |
| |
|
| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||| | || |||| || || |
|
|
| T |
12907735 |
cactgatgaactttttgaagatggtcaaaatctgcataactttgttacaatttcatttcctgataatcttataaagattttggatccacatcttttacca |
12907834 |
T |
|
| Q |
224 |
agagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgta |
323 |
Q |
| |
|
|||| || ||||| || ||||||||||| || | ||||| ||||| ||||| |||||||||||||||| |||||||||||||||||||||| | ||| |
|
|
| T |
12907835 |
agagctgaagaaggaggaatagaagatggaattcatgagattcttattccaaatgtagaggagtgcttaacttcactttttaggattggacttttatgtt |
12907934 |
T |
|
| Q |
324 |
caatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta |
377 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
12907935 |
cattggaatcaacaaaagaaagaatgaatattgtagatgtcaatagagagctta |
12907988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 26 - 377
Target Start/End: Original strand, 12932726 - 12933077
Alignment:
| Q |
26 |
catgttttagagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaattcttaccggtagaagacccg |
125 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||| |
|
|
| T |
12932726 |
catgttttagagtatgggatgggttcagaagtttccacatgtggtgacatgtatagctttggaatccttatgctggaaatgcttactggtagaagaccca |
12932825 |
T |
|
| Q |
126 |
ctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaaacgattttggaccgacgtcttatatcaag |
225 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||| | || |||| || |||| |
|
|
| T |
12932826 |
ccgatgaactttttgaagatggtcaaaatctgcataactttgttacaatttcatttcctgataatcttataaagattttggatccacatcttttaccaag |
12932925 |
T |
|
| Q |
226 |
agatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgtaca |
325 |
Q |
| |
|
|| || ||||| |||||||||||||| |||| ||||| || || ||||| | |||| || ||||| ||||||||| ||||||||| |||| | ||| | |
|
|
| T |
12932926 |
agctgaagaaggagcaatagaagatggaaatcatgagattcatattccaactatagaagattgctttgtttcacttcttaggattgcacttttatgttct |
12933025 |
T |
|
| Q |
326 |
atggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12933026 |
ttggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta |
12933077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 24 - 377
Target Start/End: Original strand, 12900015 - 12900371
Alignment:
| Q |
24 |
tacatgttttagagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaattcttaccggtagaagacc |
123 |
Q |
| |
|
||||| ||||||||||||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
12900015 |
tacatattttagagtatgggatgggttcagaagtatccacttgtggtgacatgtatagctttggaatccttatgctggaaatgcttactggtagaagacc |
12900114 |
T |
|
| Q |
124 |
cgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaaacgattttggaccgacgtcttatatca |
223 |
Q |
| |
|
| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||| | || |||| || || |
|
|
| T |
12900115 |
cactgatgaactttttgaagatggtcaaaatctgcataactttgttacaatttcatttcctgataatcttataaagattttggatccacatcttttacca |
12900214 |
T |
|
| Q |
224 |
agagatgtaga---agtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggacttattt |
320 |
Q |
| |
|
|||| || ||| || |||||||||||||| |||| ||||| || || ||||| | |||| |||||||||||||||||| ||||||||| |||| | | |
|
|
| T |
12900215 |
agagctgaagaattaggagcaatagaagatggaaatcatgagattcatattccaactatagaagagtgcttagtttcacttcttaggattgcacttttat |
12900314 |
T |
|
| Q |
321 |
gtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta |
377 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12900315 |
gttctttggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta |
12900371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 24 - 377
Target Start/End: Original strand, 12949078 - 12949417
Alignment:
| Q |
24 |
tacatgttttagagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaattcttaccggtagaagacc |
123 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
12949078 |
tacatgttttagagtatgggatgggttcggaagtatccacttgtggtgacatgtatagctttggaatccttatgctggaaatgcttactggtagaagacc |
12949177 |
T |
|
| Q |
124 |
cgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaaacgattttggaccgacgtcttatatca |
223 |
Q |
| |
|
| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | || ||||||||| | || |||| || || |
|
|
| T |
12949178 |
cactgatgaactttttgaagatggtcaaaatctgcataactttgttaaaatttcatttcccaataatttcgtaaagattttggatccacatcttttacca |
12949277 |
T |
|
| Q |
224 |
agagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagttt-cactttttaggattggacttatttgt |
322 |
Q |
| |
|
|||| | ||||||| |||| ||||| ||||| ||||| | |||| ||||||| ||||| | |||||||||||||||||| ||||| |
|
|
| T |
12949278 |
agagct---------------gaagatggaaatcatgagattcttattccaactatagaagagtgctcagtttcccctttttaggattggacttttttgt |
12949362 |
T |
|
| Q |
323 |
acaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta |
377 |
Q |
| |
|
|| |||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12949363 |
tcattggaatcatcaaatgaaagaatgaatattgtggatgtcactagagagctta |
12949417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 174; Significance: 3e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 24 - 377
Target Start/End: Complemental strand, 17923161 - 17922808
Alignment:
| Q |
24 |
tacatgttttagagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaattcttaccggtagaagacc |
123 |
Q |
| |
|
||||| ||||||||||||| ||||||| ||||| ||||| | ||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| |
|
|
| T |
17923161 |
tacatattttagagtatgggatgggttcagaagtatccacttatggtgacatgtatagctttggaatccttatgctggaaatgcttaccggaagaagacc |
17923062 |
T |
|
| Q |
124 |
cgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaaacgattttggaccgacgtcttatatca |
223 |
Q |
| |
|
| | ||||| ||||| |||| ||||||||||| |||||||||||| |||||||||||||| ||||||| || ||||||||| | || |||| || || |
|
|
| T |
17923061 |
caccgatgaactttttaaagacggtcaaaatctacataactttgttacaatttcatttccttgcaatcttataaagattttggatccacatcttttacca |
17922962 |
T |
|
| Q |
224 |
agagatgtagaagtagcaatagaagatgaaaattgtgagaatcttaatccaagtgtagaggagtgcttagtttcactttttaggattggacttatttgta |
323 |
Q |
| |
|
|||| || ||| | |||| |||||||| |||| ||||| |||| ||||| ||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
17922961 |
agagctgaagatggagcacgagaagatggaaatcatgagattcttcttccaactgtagaggagtgcttagtttccctttttaggattggacttttttgtt |
17922862 |
T |
|
| Q |
324 |
caatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta |
377 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17922861 |
cattggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctta |
17922808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0692 (Bit Score: 128; Significance: 7e-66; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 24 - 207
Target Start/End: Original strand, 7738 - 7921
Alignment:
| Q |
24 |
tacatgttttagagtatggaatgggttttgaagtgtccacgtgtggtgacatgtatagctttggaatccttatgttggaaattcttaccggtagaagacc |
123 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
7738 |
tacatgttttagagtatgggatgggttaagaagtatccacatgtggtgacatgtatagctttggaatccttatgctggaaatgcttactggtagaagacc |
7837 |
T |
|
| Q |
124 |
cgctaatgaagtttttgaagatggtcaaaatctgcataactttgttgcaatttcatttcctgataatcttaaaacgattttgga |
207 |
Q |
| |
|
| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||| |
|
|
| T |
7838 |
cactgatgaactttttgaagatggtcaaaatctgcataactttgttacaatttcatttcctgataatcttataaagattttgga |
7921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 277 - 377
Target Start/End: Complemental strand, 31466648 - 31466548
Alignment:
| Q |
277 |
tgtagaggagtgcttagtttcactttttaggattggacttatttgtacaatggaatcaccaaaagaaagaatgaatattgtggatgtcactagagagctt |
376 |
Q |
| |
|
||||||| | || ||| ||||||||||||| |||| |||| |||| |||||||||||||||||||||| |||| ||| || || |||| |||||||||| |
|
|
| T |
31466648 |
tgtagagaaatgtttaatttcactttttagtattgcacttggttgttcaatggaatcaccaaaagaaaggatgagtatggttgaagtcattagagagctt |
31466549 |
T |
|
| Q |
377 |
a |
377 |
Q |
| |
|
| |
|
|
| T |
31466548 |
a |
31466548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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