View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1645_low_14 (Length: 224)

Name: NF1645_low_14
Description: NF1645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1645_low_14
NF1645_low_14
[»] chr1 (2 HSPs)
chr1 (7-224)||(50274921-50275119)
chr1 (7-224)||(50278945-50279143)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 50274921 - 50275119
Alignment:
Q  7 agaagtacagatattaaaatttcatgtgtcaatttaccatataagagttggaatgatatatctatggcaattagtttcaagcgtagcactgtcacaacat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50274921 agaagtacagatattaaaatttcatgtgtcaatttaccatataagagttggaatgatatatctatggcaattagtttcaagcgtagcactgtcacaacat 50275020  T
Q  107 aacatccccttgaatgtgatgatattcacaacatttatcaatacgtcaattattcgcctacacactagttatgcactatagaatgtgtcacttcctttag 206  Q
    ||||||||||||||||                   ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  50275021 aacatccccttgaatg-------------------tatcaatacgtcaattattcgcctacacactagttatgcactatagaatgtgtcaattcctttag 50275101  T

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Target: chr1; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 50278945 - 50279143
Alignment:
Q  7 agaagtacagatattaaaatttcatgtgtcaatttaccatataagagttggaatgatatatctatggcaattagtttcaagcgtagcactgtcacaacat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50278945 agaagtacagatattaaaatttcatgtgtcaatttaccatataagagttggaatgatatatctatggcaattagtttcaagcgtagcactgtcacaacat 50279044  T
Q  107 aacatccccttgaatgtgatgatattcacaacatttatcaatacgtcaattattcgcctacacactagttatgcactatagaatgtgtcacttcctttag 206  Q
    ||||||||||||||||                   ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  50279045 aacatccccttgaatg-------------------tatcaatacgtcaattattcgcctacacactagttatgcactatagaatgtgtcaattcctttag 50279125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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