View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1645_low_2 (Length: 600)

Name: NF1645_low_2
Description: NF1645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1645_low_2
NF1645_low_2
[»] chr5 (16 HSPs)
chr5 (16-577)||(3299645-3300214)
chr5 (16-577)||(3392538-3393107)
chr5 (230-570)||(1163333-1163676)
chr5 (325-570)||(1850063-1850293)
chr5 (230-577)||(40418410-40418758)
chr5 (230-577)||(39879947-39880297)
chr5 (230-577)||(38987832-38988180)
chr5 (230-577)||(39726551-39726906)
chr5 (79-198)||(1163164-1163288)
chr5 (144-234)||(1850346-1850444)
chr5 (455-577)||(39168979-39169101)
chr5 (38-87)||(39880491-39880540)
chr5 (151-232)||(39880327-39880405)
chr5 (151-232)||(40418782-40418860)
chr5 (467-509)||(39400042-39400084)
chr5 (151-204)||(38988229-38988282)
[»] chr4 (6 HSPs)
chr4 (450-575)||(25912122-25912244)
chr4 (230-374)||(44444395-44444543)
chr4 (275-370)||(25911951-25912046)
chr4 (45-86)||(25911657-25911698)
chr4 (460-520)||(44444614-44444674)
chr4 (151-187)||(25911785-25911821)


Alignment Details
Target: chr5 (Bit Score: 529; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 16 - 577
Target Start/End: Complemental strand, 3300214 - 3299645
Alignment:
Q  16 gaagtaaaactagccatgtttgagtgcaacacatggaagacaggaaagtaaatggaagggtgaggtgaaatg--------tactttatatgccgaatata 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||        ||||||||||||||||||||    
T  3300214 gaagtaaaactagccatgtttgagtgcaacacatggaagacaggaaagtaaatgaaagggtgaggtgaaatggtgaaaggtactttatatgccgaatata 3300115  T
Q  108 attaatgacatgcatggtttgggaagcacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300114 attaatgacatgcatggtttgggaagcacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaac 3300015  T
Q  208 tagttgttcttgttatcggaataaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtga 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300014 tagttgttcttgttatcggaataaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtga 3299915  T
Q  308 tgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatgg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299914 tgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatgg 3299815  T
Q  408 cagttggttcgatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttat 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3299814 cagttggttcgatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttat 3299715  T
Q  508 cctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcagg 577  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  3299714 cctgaacagcaacaactctaccattctcctcttcggcataactaattttggtgatcaaaatggcagcagg 3299645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 16 - 577
Target Start/End: Complemental strand, 3393107 - 3392538
Alignment:
Q  16 gaagtaaaactagccatgtttgagtgcaacacatggaagacaggaaagtaaatggaagggtgaggtgaaatg--------tactttatatgccgaatata 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||        ||||||||||||||||||||    
T  3393107 gaagtaaaactagccatgtttgagtgcaacacatggaagacaggaaagtaaatgaaagggtgaggtgaaatggtgaaaggtactttatatgccgaatata 3393008  T
Q  108 attaatgacatgcatggtttgggaagcacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3393007 attaatgacatgcatggtttgggaagcacacataacttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaac 3392908  T
Q  208 tagttgttcttgttatcggaataaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtga 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392907 tagttgttcttgttatcggaataaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtga 3392808  T
Q  308 tgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatgg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392807 tgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatgg 3392708  T
Q  408 cagttggttcgatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttat 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3392707 cagttggttcgatttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttat 3392608  T
Q  508 cctgaacagcaacaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcagg 577  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  3392607 cctgaacagcaacaactctaccattctcctcttcggcataactaattttggtgatcaaaatggcagcagg 3392538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 230 - 570
Target Start/End: Original strand, 1163333 - 1163676
Alignment:
Q  230 aaatagaaaaaagctaataaatgaaaagcatcttccttgttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtg 329  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1163333 aaatataaaaaagctaataaatgaaaagcatcttccttgtttttgttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagta 1163432  T
Q  330 gatcatc---catcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcggt 426  Q
    |||||||   ||||||||||||||||||||||| ||||||||||   |||||||||| ||| |  || | || |||||||||||| |||| |||||||||    
T  1163433 gatcatcatccatcaagcaaatcctccaatggaaaaaaaggtctataaaagggggatctgaagagtgggccagatggatggcagtaggttggatttcggt 1163532  T
Q  427 agattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactct 526  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  1163533 agattgctctttggtcgaagaggagtttagggtcttgttgtagatcttttaagaagagttgataaccagattcccacttatcctgaacaggaacaactct 1163632  T
Q  527 accattctcctcttgggcataactaatcttggtgatcaaaatgg 570  Q
    ||||||||||||||  ||| ||||||||||||| ||||||||||    
T  1163633 accattctcctctttagcaaaactaatcttggtaatcaaaatgg 1163676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 325 - 570
Target Start/End: Complemental strand, 1850293 - 1850063
Alignment:
Q  325 aagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcg 424  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || | || ||||||||||||||||| |||||||    
T  1850293 aagtagatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaaaggggatctgatgggtgggccagatggatggcagttggttggatttcg 1850194  T
Q  425 gtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaact 524  Q
    ||               ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  1850193 gt---------------cgaagaggagtttagggtcttgttgtaaatcttttaagaagagttgataatcagattcccacttatcctgaacaggaataact 1850109  T
Q  525 ctaccattctcctcttgggcataactaatcttggtgatcaaaatgg 570  Q
    ||||||||||||||||  ||| ||||||||||||| ||||||||||    
T  1850108 ctaccattctcctctttagcaaaactaatcttggtaatcaaaatgg 1850063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 230 - 577
Target Start/End: Complemental strand, 40418758 - 40418410
Alignment:
Q  230 aaatagaaaaaagctaataaatgaaaagcatcttccttg--ttttg--gttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgta 325  Q
    ||||||||| || ||||||||||||||||||||||||||  |||||  ||||||||||  |||||||||| || | ||||||| |||||||||||| |||    
T  40418758 aaatagaaagaacctaataaatgaaaagcatcttccttgatttttgttgttattggaacaaacaaaacattaacaaaagtgatttttgtttaagctagta 40418659  T
Q  326 agtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggattt-gatggttgtgtcaaatggatggcagttggttcgatttcg 424  Q
    | | |||||||| |||||||| ||||||||||||  |||||||||  ||  ||||||||  || ||     ||| |||  | ||  |||||| ||| |||    
T  40418658 actagatcatccgtcaagcaagtcctccaatggaacaaaaggtctggtag-gggggattacgaagggcccatcatatgtgtagcttttggtttgatctcg 40418560  T
Q  425 gtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaact 524  Q
    ||||  |||||||  || |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| ||||||||||    
T  40418559 gtaggctgctcttacgttgaagaggagtttagtgtcttgttgtagatcattgaagaagagttgataatcagattcccacttatcatgaagagcaacaact 40418460  T
Q  525 ctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcagg 577  Q
    ||||||||   ||||| ||||||||||||||||||||||||||||||||||||    
T  40418459 ctaccatt---ctcttcggcataactaatcttggtgatcaaaatggcagcagg 40418410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 230 - 577
Target Start/End: Complemental strand, 39880297 - 39879947
Alignment:
Q  230 aaatagaaaaaagctaataaatgaaaagcatcttccttgttt-------tggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagctt 322  Q
    ||||||||| || |||||||||||||||||||||||||| ||       |  |||||||||  || |||||||||| | ||||||| ||||||||||||     
T  39880297 aaatagaaagaacctaataaatgaaaagcatcttccttgattgttgttgttattattggaacaaa-aaaacatcaacaaaagtgatttttgtttaagcta 39880199  T
Q  323 gtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatt-tgatggttgtgtcaaatggatggcagttggttcgatt 421  Q
    |||| | |||||||| |||||||| |||||||||||| ||||||||||  ||  |||||||| ||| ||     ||| |||  | ||  |||||| |||     
T  39880198 gtaactagatcatccgtcaagcaagtcctccaatggaaaaaaaggtctggtag-gggggattctgaagggcccatcatatgtgtagcttttggtttgatc 39880100  T
Q  422 tcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaaca 521  Q
    |||||||  |||||||  |  ||||| ||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||  |||||||||    
T  39880099 tcggtaggctgctcttacgctgaagatgagtttagtgttttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaaca 39880000  T
Q  522 actctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcagg 577  Q
    |||||||||||   | ||| |||||||||||||||| |||||||||||||||||||    
T  39879999 actctaccatt---cacttcggcataactaatcttgctgatcaaaatggcagcagg 39879947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 230 - 577
Target Start/End: Complemental strand, 38988180 - 38987832
Alignment:
Q  230 aaatagaaaaaagctaataaatgaaaagcatcttccttgttt----tggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgta 325  Q
    ||||||||| || |||||||||||| |||| |||||||| ||    | ||||||||||  ||||||||||||| | ||||||| |||||||||||| ||     
T  38988180 aaatagaaagaacctaataaatgaagagcagcttccttgattgttgttgttattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtg 38988081  T
Q  326 agtggatcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcgatttcgg 425  Q
    | | |||||||| |||||||| ||||||||||||| |||||||||  ||  ||||  |  || ||    |||| |||  | |  |||| || ||||||||    
T  38988080 actagatcatccgtcaagcaagtcctccaatggatcaaaaggtctggtaggggggtctacgaagggcccgtcatatgtgtagtggttgtttggatttcgg 38987981  T
Q  426 tagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactc 525  Q
    |||  |||| ||   | |||||| |||| || ||||||||||||||| || ||||||||||||||||||||||||||||||||||  |||||||||||||    
T  38987980 taggctgctgttatcttgaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagcaacaactc 38987881  T
Q  526 taccattctcctcttgggcataactaatcttggtgatcaaaatggcagcagg 577  Q
    |||||||   | ||| |||||||||||||||| |||||||||||||||||||    
T  38987880 taccatt---cacttcggcataactaatcttgctgatcaaaatggcagcagg 38987832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 230 - 577
Target Start/End: Complemental strand, 39726906 - 39726551
Alignment:
Q  230 aaatagaaaaaagctaataaatgaaaagcatcttccttgttt-------tggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagctt 322  Q
    ||||||||| || |||||||||||||||||||||||||| ||       |  |||||||||  ||||||||||||| | | ||||| ||||||||||||     
T  39726906 aaatagaaagaacctaataaatgaaaagcatcttccttgattgttgttgttattattggaacaaacaaaacatcaacaaaggtgatttttgtttaagcta 39726807  T
Q  323 gtaagtgg----atcatccatcaagcaaatcctccaatggataaaaaggtcttctaaagggggatttgatggttgtgtcaaatggatggcagttggttcg 418  Q
    |||| | |    ||||||| |||||||| ||||||||||||| |||||||||  ||  ||||  |  || ||    |||| |||  | |  |||| || |    
T  39726806 gtaactagctagatcatccgtcaagcaagtcctccaatggatcaaaaggtctgataggggggtctacgaagggcccgtcatatgtgtagtggttgtttgg 39726707  T
Q  419 atttcggtagattgctcttcggtcgaagaggagtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagca 518  Q
    ||||||||||  |||| ||   | |||||| |||| || ||||||||||||||| || ||||||||||||||||||||||||||||||||||  ||||||    
T  39726706 atttcggtagggtgctgttatcttgaagagtagttgagggtcttgttgtagatcattgaagaagagttgataatcagattcccacttatccttgacagca 39726607  T
Q  519 acaactctaccattctcctcttgggcataactaatcttggtgatcaaaatggcagcagg 577  Q
    ||||||||||||||   | ||| |||||||||||||||| |||||||||||||||||||    
T  39726606 acaactctaccatt---cacttcggcataactaatcttgctgatcaaaatggcagcagg 39726551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 79 - 198
Target Start/End: Original strand, 1163164 - 1163288
Alignment:
Q  79 ggtgaaatgtactttatatgccgaatataattaatgacatgcatggtttgggaagcac---------acataacttgttctaataaacataaatatcaaa 169  Q
    ||||||| | |||||||||||||||||||||    |||| ||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  1163164 ggtgaaaggaactttatatgccgaatataat----gacaggcatggtttgggaagcacgatcaacacacataacttgttctaataaacataaatatcaaa 1163259  T
Q  170 cagaaattgcaaattgcaacagagtaagt 198  Q
    ||||||||||||||||||||| |||||||    
T  1163260 cagaaattgcaaattgcaacaaagtaagt 1163288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 144 - 234
Target Start/End: Complemental strand, 1850444 - 1850346
Alignment:
Q  144 ttgttctaataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaac--------tagttgttcttgttatcggaataaata 234  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||        || ||||||||||||||||||||||||    
T  1850444 ttgttctaataaacataaatatcaaacagaaattgtaaattgcaacaaagtaagtgaaaagaaccttttaagtatttgttcttgttatcggaataaata 1850346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 455 - 577
Target Start/End: Complemental strand, 39169101 - 39168979
Alignment:
Q  455 agtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaac---tctaccattctcctcttgggcataacta 551  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| |||||||   ||||||||| || || |   ||||||||    
T  39169101 agtgtcttgttgtagatcttttaaaaagagttgataatcagattcccacttaccctcaacaacaacaacaattctaccattttcttcat---cataacta 39169005  T
Q  552 atcttggtgatcaaaatggcagcagg 577  Q
     ||||||| |||||||| ||||||||    
T  39169004 ctcttggtaatcaaaattgcagcagg 39168979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 39880540 - 39880491
Alignment:
Q  38 agtgcaacacatggaagacaggaaagtaaatggaagggtgaggtgaaatg 87  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  39880540 agtgcaacatatggaagacaggaaagtaaatggtagggtgaggtgaaatg 39880491  T

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Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 39880405 - 39880327
Alignment:
Q  151 aataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaactagttgttcttgttatcggaataaa 232  Q
    |||||||||||||||||||||||||||||||| |||| ||   ||||||||||| ||   |||||||||| || ||||||||    
T  39880405 aataaacataaatatcaaacagaaattgcaaactgcagcaacctaagtgaaaagcac---ttgttcttgtcattggaataaa 39880327  T

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Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 151 - 232
Target Start/End: Complemental strand, 40418860 - 40418782
Alignment:
Q  151 aataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaagaactagttgttcttgttatcggaataaa 232  Q
    |||||||||||||||||||||||||||||||| |||| ||   ||||||||||| ||   |||||||||| || ||||||||    
T  40418860 aataaacataaatatcaaacagaaattgcaaactgcagcaacctaagtgaaaagcac---ttgttcttgtcattggaataaa 40418782  T

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Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 509
Target Start/End: Complemental strand, 39400084 - 39400042
Alignment:
Q  467 tagatcttttaagaagagttgataatcagattcccacttatcc 509  Q
    |||||||| ||||||||||||||||||||||| ||||||||||    
T  39400084 tagatcttctaagaagagttgataatcagattgccacttatcc 39400042  T

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Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 38988282 - 38988229
Alignment:
Q  151 aataaacataaatatcaaacagaaattgcaaattgcaacagagtaagtgaaaag 204  Q
    |||||||||||||||||||||||||||||||| |||| ||   |||||||||||    
T  38988282 aataaacataaatatcaaacagaaattgcaaactgcagcaacctaagtgaaaag 38988229  T

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Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 450 - 575
Target Start/End: Original strand, 25912122 - 25912244
Alignment:
Q  450 agtttagtgtcttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccattctcctcttgggcataac 549  Q
    ||||||| |||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||| ||||||||    
T  25912122 agtttagggtcttgctgtagataatttaagaagagttgataatcagattcccacttatcctgaacagcaacaactctaccatt---ctcttcggcataac 25912218  T
Q  550 taatcttggtgatcaaaatggcagca 575  Q
    ||||||||||||||||||||||||||    
T  25912219 taatcttggtgatcaaaatggcagca 25912244  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 230 - 374
Target Start/End: Original strand, 44444395 - 44444543
Alignment:
Q  230 aaatagaaaaaagctaataaatgaaaagcatcttccttg----ttttggttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgta 325  Q
    ||||||||| || ||||||||||||| |||| |||||||    |||| |||||||||   ||||||||||||| | ||||||| ||||||||||||||||    
T  44444395 aaatagaaataacctaataaatgaaaggcatattccttgattgttttcgttattggagtaaacaaaacatcaacaaaagtgatttttgtttaagcttgta 44444494  T
Q  326 agtggatcatccatcaagcaaatcctccaatggataaaaaggtcttcta 374  Q
    | | |||||||| |||||||| ||||| ||||||  ||||| |||||||    
T  44444495 actagatcatccgtcaagcaagtcctctaatggaacaaaagatcttcta 44444543  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 275 - 370
Target Start/End: Original strand, 25911951 - 25912046
Alignment:
Q  275 ttattggaagtaacaaaacatcaatagaagtgatgtttgtttaagcttgtaagtggatcatccatcaagcaaatcctccaatggataaaaaggtct 370  Q
    |||||||||  ||||||||||||| | ||||||| |||||||||||| |||| | |||||||| |||||||| ||||||||||||  |||||||||    
T  25911951 ttattggaacaaacaaaacatcaacaaaagtgatttttgtttaagctagtaactagatcatccgtcaagcaagtcctccaatggaacaaaaggtct 25912046  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 25911657 - 25911698
Alignment:
Q  45 cacatggaagacaggaaagtaaatggaagggtgaggtgaaat 86  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  25911657 cacatggaagacaggaaagtaaatggtagggtgaggtgaaat 25911698  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 460 - 520
Target Start/End: Original strand, 44444614 - 44444674
Alignment:
Q  460 cttgttgtagatcttttaagaagagttgataatcagattcccacttatcctgaacagcaac 520  Q
    |||||| ||||| ||||||||| |||| ||||||||||||| | |||||||||||| ||||    
T  44444614 cttgttttagatattttaagaaaagtttataatcagattccaatttatcctgaacaacaac 44444674  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 151 - 187
Target Start/End: Original strand, 25911785 - 25911821
Alignment:
Q  151 aataaacataaatatcaaacagaaattgcaaattgca 187  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  25911785 aataaacataagtatcaaacagaaattgcaaactgca 25911821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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