View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1645_low_4 (Length: 419)
Name: NF1645_low_4
Description: NF1645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1645_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 414
Target Start/End: Original strand, 28666620 - 28667016
Alignment:
| Q |
18 |
agaatgaaaaaggaatgatgtgacaaaaactgaaaaattacctctttgtgatcaacaggaacagaaggatataatctgagagtttcagataaacaagcat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28666620 |
agaatgaaaaaggaatgatgtgacaaaaactgaaaaattacctccttgtgatcaacaggaacagaaggatataatctgagagtttcagataaacaagcat |
28666719 |
T |
|
| Q |
118 |
gcaaatagtccatcttttttatctcttcaggcctaaatatcaaagaattttcaaattcttccttctttatatcatttctctgactcaccaccttgcatat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28666720 |
gcaaatagtccatcttttttatctcttcaggcctaaatatcaaagaattttcaaattcttccttctttatatcatttctctgactcaccaccttgcatat |
28666819 |
T |
|
| Q |
218 |
ctcttctaatatcttctcctccacttcatgattctgatcaagtaaccnnnnnnnccaactcaaagccacagaagaagtgtctctcccagctagtataaaa |
317 |
Q |
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| T |
28666820 |
ctcttctaatatcttctcctccacttcatgattctgatcaagtaaccaaaaaaaccaactcaaagccacagaagaagtgtctctcccagctagtataaaa |
28666919 |
T |
|
| Q |
318 |
ttcacacatatatccctcagaaacttatctgaataagcacttccattctcatccttcatcttcataaaaacagttaacaaatctgacctttgcttct |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28666920 |
ttcacacatatatccctcagaaacttatctgaataagcacttccattctcatccttcatcttcataaaaacagttaacaaatctgacctttgtttct |
28667016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 54 - 403
Target Start/End: Complemental strand, 13887897 - 13887542
Alignment:
| Q |
54 |
attacctctttgtgatcaacaggaacagaaggatataatctgagagtttcagataaacaagcatgcaaatagtccatcttttttatctcttcaggcctaa |
153 |
Q |
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||||||||||| ||||| | ||||||||||||||| ||||| |||||||| || | | |||||||||||| ||||||| || ||||| ||||| | | |
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| T |
13887897 |
attacctctttatgatccataggaacagaaggatacaatctaagagtttctgaaagagcagcatgcaaataacccatcttcttaatctcctcaggtttga |
13887798 |
T |
|
| Q |
154 |
atatcaaagaattttcaaattcttccttctttatatcattt------ctctgactcaccaccttgcatatctcttctaatatcttctcctccacttcatg |
247 |
Q |
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|| | ||||||| | ||| ||||||| || |||| | | || |||||||| ||| |||| |||||||||||||| ||||||||||||||||| |
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| T |
13887797 |
atcttaaagaatcattaaacacttccttattaatattaatatcctccctttgactcacaaccctgcaaatctcttctaatattttctcctccacttcatg |
13887698 |
T |
|
| Q |
248 |
attctgatcaagtaaccnnnnnnnccaactcaaagccacagaagaagtgtctctcccagctagtataaaattcacacatatatccctcagaaacttatct |
347 |
Q |
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| T |
13887697 |
attctgattaagtaaccagaaaaaccagcttaaagcaactgaagaagtgtctctcccagctaatataaaacttacacatatatccctcaagaacttatct |
13887598 |
T |
|
| Q |
348 |
gaataagcacttccattctcatccttcatcttcataaaaacagttaacaaatctga |
403 |
Q |
| |
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|||||||| ||||||||||||| || | ||||||||| ||||||||||||||||| |
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| T |
13887597 |
gaataagcctttccattctcatctttaagcttcataaacacagttaacaaatctga |
13887542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 72 - 400
Target Start/End: Original strand, 13897337 - 13897665
Alignment:
| Q |
72 |
acaggaacagaaggatataatctgagagtttcagataaacaagcatgcaaatagtccatcttttttatctcttcaggcctaaatatcaaagaattttcaa |
171 |
Q |
| |
|
||||||||||||||||||||||| |||| ||| || | | ||||||||||| |||||||| || ||||| |||||| | ||| ||||||||| | || |
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| T |
13897337 |
acaggaacagaaggatataatctaagagcttctgaaagagctgcatgcaaataatccatcttcttaatctcctcaggcttgaatctcaaagaatcattaa |
13897436 |
T |
|
| Q |
172 |
attcttccttctttatatcatttctctgactcaccaccttgcatatctcttctaatatcttctcctccacttcatgattctgatcaagtaaccnnnnnnn |
271 |
Q |
| |
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| ||||||| || ||||| | || |||| ||| ||| |||| |||||||||||||| |||||||| ||||||||||||||||||| |||| |
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| T |
13897437 |
acacttccttattaatatcctccctttgacacacaaccctgcaaatctcttctaatattttctcctcaacttcatgattctgatcaaccaaccagaaaaa |
13897536 |
T |
|
| Q |
272 |
ccaactcaaagccacagaagaagtgtctctcccagctagtataaaattcacacatatatccctcagaaacttatctgaataagcacttccattctcatcc |
371 |
Q |
| |
|
||| || ||||| || |||||||||||||||||||||| ||| ||||| ||||| |||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
13897537 |
ccagcttaaagcaactgaagaagtgtctctcccagctaatatgaaatttacacaaatatccctcaaaaacttatctgaataagactttccattctcatcc |
13897636 |
T |
|
| Q |
372 |
ttcatcttcataaaaacagttaacaaatc |
400 |
Q |
| |
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|| | | |||| || |||||||||||||| |
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| T |
13897637 |
ttaagcctcatgaacacagttaacaaatc |
13897665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 399
Target Start/End: Original strand, 7295586 - 7295696
Alignment:
| Q |
287 |
agaagaagtgtctctcccagctagtataaaattcacacatatatccctcagaaacttatctgaataagcacttccattctcatccttcatcttcataaaa |
386 |
Q |
| |
|
|||||||||||||||||| |||| ||| ||||||| ||||||||||||| | |||||||||| || | | |||||||||||||| | | | |||| || |
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| T |
7295586 |
agaagaagtgtctctcccggctaatatgaaattcaaacatatatccctc--acacttatctgagtatgaaattccattctcatccgtaagcctcattaac |
7295683 |
T |
|
| Q |
387 |
acagttaacaaat |
399 |
Q |
| |
|
||||||||||||| |
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|
| T |
7295684 |
acagttaacaaat |
7295696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 203 - 400
Target Start/End: Original strand, 1034525 - 1034722
Alignment:
| Q |
203 |
caccaccttgcatatctcttctaatatcttctcctccacttcatgattctgatcaagtaaccnnnnnnnccaactcaaagccacagaagaagtgtctctc |
302 |
Q |
| |
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||||||| |||| || ||||||||||| |||||||| ||||||||||||||||||| |||| ||| |||||||| || ||||||||||||||| |
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| T |
1034525 |
caccaccctgcaaatttcttctaatattttctcctcaacttcatgattctgatcaaccaaccagaaaaaccagctcaaagcaactgaagaagtgtctctc |
1034624 |
T |
|
| Q |
303 |
ccagctagtataaaattcacacatatatccctcagaaacttatctgaataagcacttccattctcatccttcatcttcataaaaacagttaacaaatc |
400 |
Q |
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||||||| ||||||||| ||||| |||||||||| ||||||||||||||||| |||||||||||||||| | | ||||||| |||||||||||||| |
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| T |
1034625 |
ccagctaatataaaatttacacaaatatccctcaaaaacttatctgaataagactttccattctcatccttaagcctcataaacacagttaacaaatc |
1034722 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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