View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1645_low_6 (Length: 375)
Name: NF1645_low_6
Description: NF1645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1645_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 187 - 364
Target Start/End: Complemental strand, 37785443 - 37785267
Alignment:
| Q |
187 |
gcagatgattgtcttttgtttactcaagctaaatcctcttaggctagaatagtgaaagaggtgttaaagagannnnnnncatgcttctggattgaaagtt |
286 |
Q |
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| T |
37785443 |
gcagatgattgtcttttgtttactcaagctaaatcctcttaagctagaatagtgaaagaggtgttaaagagatttttt-catgcttctggattgaaagtt |
37785345 |
T |
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| Q |
287 |
aatattcaaaaatctagattcatgtcttatactaatatctctagaaacaaagtgacaaaatttgtttctattgttcat |
364 |
Q |
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| T |
37785344 |
aatattcaaaaatctagattcatgttttatactaatatctctagaaacaaagtgaaaaaatttgtttctattgttcat |
37785267 |
T |
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Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 187 - 364
Target Start/End: Complemental strand, 55430001 - 55429825
Alignment:
| Q |
187 |
gcagatgattgtcttttgtttactcaagctaaatcctcttaggctagaatagtgaaagaggtgttaaagagannnnnnncatgcttctggattgaaagtt |
286 |
Q |
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| T |
55430001 |
gcagatgattgtcttttgtttaatcaagctaaatcctctcaagctagaatagtgaaagaggtcttaaagag-tttttgtcatgcttctgggttaaaagtt |
55429903 |
T |
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| Q |
287 |
aatattcaaaaatctagattcatgtcttatactaatatctctagaaacaaagtgacaaaatttgtttctattgttcat |
364 |
Q |
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| T |
55429902 |
aatattcaaaaatctagattcatatcttatgctaatatctctagaagcaaagtgaataaattttcttctatcgttcat |
55429825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 266 - 364
Target Start/End: Original strand, 54873663 - 54873761
Alignment:
| Q |
266 |
catgcttctggattgaaagttaatattcaaaaatctagattcatgtcttatactaatatctctagaaacaaagtgacaaaatttgtttctattgttcat |
364 |
Q |
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| T |
54873663 |
catgcttctgggttgaaagttaatattcaaatatctagattcatgtcttctgctaatatctctagaagcaaagtgaataaattttcttctatcgttcat |
54873761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 189 - 341
Target Start/End: Complemental strand, 15919111 - 15918959
Alignment:
| Q |
189 |
agatgattgtcttttgtttactcaagctaaatcctcttaggctagaatagtgaaagaggtgttaaagagannnnnnncatgcttctggattgaaagttaa |
288 |
Q |
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||||||||| |||||||| |||||||||||||||||| | ||||||||||||||| |||||||| |||| ||||||||||| ||||||||||| |
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| T |
15919111 |
agatgattgccttttgttcactcaagctaaatcctctcaagctagaatagtgaaacaggtgttagagag-tttttgtcatgcttctgggttgaaagttaa |
15919013 |
T |
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| Q |
289 |
tattcaaaaa-tctagattcatgtcttatactaatatctctagaaacaaagtga |
341 |
Q |
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|||| ||||| |||| ||||||||||| | |||||||||||||||| ||||||| |
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| T |
15919012 |
tattaaaaaaatctaaattcatgtcttctgctaatatctctagaaaaaaagtga |
15918959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 211 - 371
Target Start/End: Original strand, 21373745 - 21373904
Alignment:
| Q |
211 |
caagctaaatcctcttaggctagaatagtgaaagaggtgttaaagagannnnnnncatgcttctggattgaaagttaatattcaaaaatctagattcatg |
310 |
Q |
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|||||||||||||| | |||||||||||||||||||||||| |||| ||||||| ||| |||||||||||||||||||||| |||||||||| |
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| T |
21373745 |
caagctaaatcctcccaagctagaatagtgaaagaggtgttagagag-tttttgtcatgcttttgggttgaaagttaatattcaaaaatttagattcatg |
21373843 |
T |
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| Q |
311 |
tcttatactaatatctctagaaacaaagtgacaaaatttgtttctattgttcatctcactc |
371 |
Q |
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|||| | |||||||| | ||| |||||||| |||||| |||||| |||||| |||||| |
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| T |
21373844 |
tcttctgctaatatcgcaagaggcaaagtgaataaattttcttctatcgttcatttcactc |
21373904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 357
Target Start/End: Complemental strand, 36253194 - 36253104
Alignment:
| Q |
266 |
catgcttctggattgaaagttaatattcaaaaatctagattcatgtcttatactaatatctctagaaacaaagtgacaaaatttgtttctat |
357 |
Q |
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||||||||||| || ||||||||||||||||||||||||||||||||| || ||||||| || | ||||||||||| ||||||| |||||| |
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| T |
36253194 |
catgcttctgg-ttaaaagttaatattcaaaaatctagattcatgtctaatcctaatatttccaaaaacaaagtgaataaatttgcttctat |
36253104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 266 - 364
Target Start/End: Original strand, 7020736 - 7020834
Alignment:
| Q |
266 |
catgcttctggattgaaagttaatattcaaaaatctagattcatgtcttatactaatatctctagaaacaaagtgacaaaatttgtttctattgttcat |
364 |
Q |
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||||||||||| ||||||||||||||||| ||||||||||||||||||| | |||||||||| ||| ||||||||| |||||| |||||| |||||| |
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| T |
7020736 |
catgcttctgggttgaaagttaatattcagaaatctagattcatgtcttctgctaatatctccagagacaaagtgaataaattttcttctatcgttcat |
7020834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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