View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1645_low_7 (Length: 341)

Name: NF1645_low_7
Description: NF1645
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1645_low_7
NF1645_low_7
[»] chr5 (25 HSPs)
chr5 (1-312)||(24885669-24885977)
chr5 (1-328)||(24163032-24163360)
chr5 (1-323)||(28759830-28760152)
chr5 (1-186)||(21391685-21391870)
chr5 (1-312)||(18303749-18304054)
chr5 (163-310)||(22747792-22747940)
chr5 (238-314)||(26013213-26013289)
chr5 (185-284)||(22797701-22797800)
chr5 (195-309)||(9823662-9823776)
chr5 (179-309)||(19570230-19570360)
chr5 (238-312)||(22820752-22820826)
chr5 (238-312)||(24495178-24495252)
chr5 (238-312)||(24515516-24515589)
chr5 (210-291)||(12063263-12063344)
chr5 (1-102)||(16525266-16525366)
chr5 (1-74)||(22748054-22748127)
chr5 (237-311)||(32452504-32452578)
chr5 (237-302)||(17446187-17446254)
chr5 (237-322)||(31419365-31419452)
chr5 (237-302)||(34063323-34063390)
chr5 (237-321)||(23393103-23393189)
chr5 (235-308)||(25936732-25936806)
chr5 (237-308)||(17607762-17607835)
chr5 (237-308)||(17618377-17618450)
chr5 (237-291)||(34052662-34052718)
[»] chr7 (22 HSPs)
chr7 (8-270)||(19414082-19414344)
chr7 (1-312)||(20052738-20053047)
chr7 (1-314)||(19842914-19843227)
chr7 (179-301)||(19143418-19143540)
chr7 (179-301)||(20742817-20742939)
chr7 (8-100)||(2642139-2642230)
chr7 (181-320)||(22974575-22974714)
chr7 (1-96)||(17918301-17918395)
chr7 (1-112)||(17915138-17915247)
chr7 (184-309)||(2277626-2277751)
chr7 (238-310)||(8309851-8309924)
chr7 (175-269)||(10974842-10974936)
chr7 (237-318)||(17914990-17915073)
chr7 (13-74)||(19143226-19143287)
chr7 (13-74)||(20742625-20742686)
chr7 (237-302)||(15888991-15889058)
chr7 (237-302)||(20490577-20490644)
chr7 (237-302)||(31117173-31117240)
chr7 (1-43)||(4876075-4876117)
chr7 (240-300)||(5290752-5290813)
chr7 (237-308)||(1782500-1782572)
chr7 (238-282)||(3856502-3856546)
[»] scaffold0032 (2 HSPs)
scaffold0032 (1-192)||(78815-79007)
scaffold0032 (239-312)||(78744-78817)
[»] chr6 (26 HSPs)
chr6 (1-314)||(20396303-20396615)
chr6 (106-314)||(20395668-20395876)
chr6 (106-300)||(20396000-20396194)
chr6 (1-309)||(19730845-19731151)
chr6 (129-314)||(20395313-20395498)
chr6 (162-318)||(21689460-21689618)
chr6 (1-119)||(27165854-27165972)
chr6 (183-312)||(27167314-27167441)
chr6 (179-309)||(34659351-34659481)
chr6 (238-310)||(10481531-10481603)
chr6 (178-314)||(10815292-10815427)
chr6 (195-310)||(4311977-4312091)
chr6 (1-103)||(17208580-17208681)
chr6 (161-309)||(17206318-17206467)
chr6 (13-72)||(240315-240374)
chr6 (24-67)||(18385929-18385972)
chr6 (246-314)||(19490300-19490368)
chr6 (237-302)||(10404132-10404199)
chr6 (237-308)||(30701937-30702008)
chr6 (238-312)||(22563296-22563369)
chr6 (237-321)||(30120486-30120572)
chr6 (265-314)||(11704728-11704777)
chr6 (165-202)||(14070697-14070734)
chr6 (222-312)||(21034399-21034492)
chr6 (236-302)||(28252154-28252222)
chr6 (236-302)||(28357301-28357369)
[»] scaffold0300 (1 HSPs)
scaffold0300 (1-328)||(11437-11766)
[»] scaffold0062 (1 HSPs)
scaffold0062 (8-309)||(1051-1352)
[»] chr4 (27 HSPs)
chr4 (1-298)||(39981004-39981301)
chr4 (183-309)||(22317303-22317429)
chr4 (165-318)||(17474628-17474780)
chr4 (180-309)||(22223399-22223526)
chr4 (179-282)||(19052737-19052839)
chr4 (178-312)||(18445305-18445437)
chr4 (237-309)||(8911036-8911107)
chr4 (143-273)||(18777222-18777353)
chr4 (165-312)||(21810468-21810615)
chr4 (238-304)||(21589034-21589100)
chr4 (238-314)||(19556068-19556143)
chr4 (237-321)||(14836690-14836776)
chr4 (2-74)||(8911234-8911307)
chr4 (248-305)||(20243440-20243497)
chr4 (237-313)||(5718872-5718948)
chr4 (237-302)||(5872976-5873043)
chr4 (237-302)||(8183528-8183595)
chr4 (237-302)||(10695246-10695313)
chr4 (237-302)||(10909012-10909079)
chr4 (237-302)||(18078496-18078563)
chr4 (237-302)||(19570621-19570688)
chr4 (13-69)||(19555786-19555840)
chr4 (248-308)||(12450174-12450234)
chr4 (237-300)||(15366279-15366343)
chr4 (11-70)||(21588751-21588808)
chr4 (20-71)||(22223210-22223259)
chr4 (236-276)||(24715470-24715510)
[»] chr8 (28 HSPs)
chr8 (9-312)||(5825252-5825553)
chr8 (179-309)||(18565354-18565484)
chr8 (9-206)||(5825758-5825954)
chr8 (162-284)||(211406-211528)
chr8 (162-284)||(240728-240850)
chr8 (162-284)||(725029-725151)
chr8 (162-284)||(794083-794205)
chr8 (1-103)||(21838520-21838621)
chr8 (239-309)||(23433630-23433700)
chr8 (237-307)||(13644656-13644726)
chr8 (237-307)||(13745081-13745151)
chr8 (1-74)||(13644857-13644930)
chr8 (1-74)||(13745282-13745355)
chr8 (222-311)||(23586728-23586817)
chr8 (31-103)||(5828459-5828531)
chr8 (182-266)||(20267853-20267937)
chr8 (182-266)||(21054482-21054566)
chr8 (196-311)||(28888673-28888786)
chr8 (2-103)||(18565588-18565689)
chr8 (255-308)||(25393991-25394044)
chr8 (237-282)||(30213770-30213817)
chr8 (237-302)||(15998832-15998899)
chr8 (237-302)||(19128345-19128412)
chr8 (237-302)||(19417948-19418015)
chr8 (237-302)||(19428523-19428590)
chr8 (237-302)||(20161847-20161914)
chr8 (1-52)||(20267654-20267705)
chr8 (1-52)||(21054283-21054334)
[»] chr3 (31 HSPs)
chr3 (8-159)||(15538655-15538806)
chr3 (1-284)||(13178311-13178594)
chr3 (179-320)||(8711839-8711981)
chr3 (179-320)||(9063726-9063868)
chr3 (176-313)||(14427628-14427764)
chr3 (176-302)||(17118522-17118647)
chr3 (240-309)||(16201847-16201916)
chr3 (13-116)||(11829969-11830072)
chr3 (238-311)||(11073823-11073896)
chr3 (183-269)||(10878423-10878509)
chr3 (239-320)||(27486593-27486674)
chr3 (162-328)||(15526337-15526501)
chr3 (240-309)||(20736632-20736701)
chr3 (176-312)||(26820584-26820719)
chr3 (178-305)||(20747256-20747380)
chr3 (181-309)||(10917654-10917779)
chr3 (237-302)||(5628602-5628668)
chr3 (179-273)||(13362947-13363038)
chr3 (237-302)||(933212-933279)
chr3 (237-302)||(1795066-1795133)
chr3 (237-302)||(7805101-7805168)
chr3 (237-302)||(13076478-13076545)
chr3 (237-276)||(17389323-17389362)
chr3 (237-302)||(17910588-17910655)
chr3 (237-322)||(24384103-24384190)
chr3 (237-321)||(4433327-4433413)
chr3 (237-321)||(19887936-19888022)
chr3 (10-52)||(21528521-21528563)
chr3 (1-46)||(8711630-8711675)
chr3 (1-46)||(9063517-9063562)
chr3 (264-312)||(4769518-4769566)
[»] chr2 (32 HSPs)
chr2 (1-188)||(17435717-17435907)
chr2 (210-328)||(17435606-17435726)
chr2 (10-273)||(16197923-16198181)
chr2 (1-312)||(21822965-21823275)
chr2 (222-309)||(17418205-17418292)
chr2 (165-313)||(27766095-27766243)
chr2 (237-309)||(8684988-8685060)
chr2 (178-312)||(21770236-21770369)
chr2 (195-309)||(26655295-26655409)
chr2 (1-74)||(22132691-22132764)
chr2 (180-311)||(19563953-19564083)
chr2 (241-308)||(24110030-24110097)
chr2 (179-269)||(26653978-26654067)
chr2 (36-116)||(16152745-16152826)
chr2 (1-314)||(21823820-21824135)
chr2 (184-312)||(22312413-22312540)
chr2 (248-308)||(23958923-23958983)
chr2 (8-73)||(24216494-24216559)
chr2 (210-309)||(16152944-16153043)
chr2 (1-74)||(26655134-26655207)
chr2 (238-281)||(14794452-14794496)
chr2 (243-303)||(16587640-16587700)
chr2 (237-312)||(21548982-21549057)
chr2 (237-302)||(24428187-24428254)
chr2 (3-58)||(26653806-26653861)
chr2 (237-302)||(26866632-26866699)
chr2 (237-302)||(26879221-26879288)
chr2 (176-301)||(16934067-16934191)
chr2 (13-71)||(19564223-19564279)
chr2 (239-308)||(19878574-19878644)
chr2 (240-308)||(26704041-26704109)
chr2 (237-291)||(38586690-38586746)
[»] scaffold0121 (2 HSPs)
scaffold0121 (13-119)||(10638-10744)
scaffold0121 (152-298)||(10759-10904)
[»] scaffold0211 (1 HSPs)
scaffold0211 (179-309)||(25109-25239)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-284)||(128394-128677)
scaffold0002 (237-302)||(100185-100252)
[»] chr1 (12 HSPs)
chr1 (1-134)||(9756988-9757121)
chr1 (179-309)||(12439859-12439989)
chr1 (178-313)||(19019785-19019918)
chr1 (7-72)||(24006696-24006761)
chr1 (239-311)||(12669814-12669886)
chr1 (18-72)||(24285809-24285863)
chr1 (225-312)||(9757155-9757242)
chr1 (243-282)||(12397234-12397273)
chr1 (237-304)||(7677356-7677425)
chr1 (237-302)||(5973272-5973339)
chr1 (1-71)||(22637905-22637975)
chr1 (218-283)||(24285977-24286042)
[»] scaffold0711 (1 HSPs)
scaffold0711 (1-309)||(2067-2372)
[»] scaffold0084 (2 HSPs)
scaffold0084 (179-309)||(18076-18206)
scaffold0084 (179-309)||(30606-30736)
[»] scaffold0004 (2 HSPs)
scaffold0004 (179-300)||(382181-382302)
scaffold0004 (36-74)||(382405-382443)
[»] scaffold0527 (2 HSPs)
scaffold0527 (179-270)||(1144-1235)
scaffold0527 (179-270)||(9207-9298)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-93)||(26030-26122)
[»] scaffold0047 (1 HSPs)
scaffold0047 (237-321)||(33524-33610)
[»] scaffold0627 (1 HSPs)
scaffold0627 (237-302)||(8691-8758)
[»] scaffold0414 (1 HSPs)
scaffold0414 (237-302)||(1455-1522)
[»] scaffold0072 (1 HSPs)
scaffold0072 (237-302)||(37356-37423)
[»] scaffold0133 (1 HSPs)
scaffold0133 (237-321)||(43147-43233)
[»] scaffold0103 (1 HSPs)
scaffold0103 (176-301)||(16085-16209)
[»] scaffold0010 (1 HSPs)
scaffold0010 (238-271)||(135640-135673)
[»] scaffold1551 (1 HSPs)
scaffold1551 (237-300)||(1051-1115)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 5e-90; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 24885669 - 24885977
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    |||||| ||||||||| || ||||||||||||||||||| ||||||| ||||||||||||||||||||| | |||| |||||||||||||||||||||||    
T  24885669 gtgcttgagcatataagtcccttggtgaaaccttgagcatctaggaaatctcagtcagttgtgattgagtagggtaaagtcttaagcaattgttcttaag 24885768  T
Q  101 caatggaagtctcttgcagaggtgcttgagcaaaagaagtccttagatagagtcctatatcatagaagtctcttgttgtgtgcttgagcattgagaagtc 200  Q
    ||| |||||| ||||||| |  |||||||| |||||||||| |||| |||||||||| | |||||||||| |||| ||||||||||||||||||||||||    
T  24885769 caagggaagtatcttgcaaatttgcttgag-aaaagaagtctttaggtagagtcctagagcatagaagtcccttgctgtgtgcttgagcattgagaagtc 24885867  T
Q  201 tcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaac 300  Q
    |||| ||  ||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||| |||| | ||||||| |||| ||||||||| |||    
T  24885868 tctt-ggtgtgtccttaagcaaattgtaatc-agagtgattatagtgaaatcccttggaagtgcaaagggattagaatacttctgtgttgtaggagaaac 24885965  T
Q  301 caatataaattg 312  Q
    || |||||||||    
T  24885966 cattataaattg 24885977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 24163360 - 24163032
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    |||||| |||| |||| |||||||| |||||||  ||||  ||||||| |||| |||||| ||||||||||||||| || |||||||| || | ||||||    
T  24163360 gtgcttgagcagataagtctcttggcgaaacctaaagcaaataggaaggctcaatcagttatgattgagcaaggtaaagacttaagcagttatgcttaag 24163261  T
Q  101 caatggaagtctcttgcagaggtgcttgagcaaaagaagtccttagatagagtcctatatcatagaagtctcttgttgt-gtgcttgagcattgagaagt 199  Q
    |||  ||||||||||| || ||| ||||||||||||||||| |||| | |||||||| | |||||||||||||||  || || |||||||||||||||||    
T  24163260 caagtgaagtctcttgtaggggtacttgagcaaaagaagtctttaggt-gagtcctagagcatagaagtctcttgcagttgtacttgagcattgagaagt 24163162  T
Q  200 ctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaa 299  Q
    || |||| | ||||||| ||||||| ||| ||||||||| |||||||||||||| |||||||||||||||||||||| ||||||  ||||||| ||||||    
T  24163161 ctattggta-tgtccttgagcaaatcgtactcaagattggttatagtgaaatccattggaagtgcaaggggactggactactccatttttgtaagaggaa 24163063  T
Q  300 ccaatataaattg--ttgtgtctttcatctc 328  Q
    |||||| ||||||  ||||||||||| ||||    
T  24163062 ccaatacaaattgttttgtgtctttcttctc 24163032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 28760152 - 28759830
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    |||||| | ||||||| |||| | ||||||||||||  ||||||||||||||||||| ||||||||||||| |||| ||||||||||| || | ||||||    
T  28760152 gtgcttgaacatataagtctcctagtgaaaccttgataacctaggaagtctcagtcatttgtgattgagcagggtaaagtcttaagcagttatgcttaag 28760053  T
Q  101 caatggaagtctcttgcagaggtgcttgagcaaaagaagtccttagatagagtcctatatcatagaagtctcttgttgtgtgcttgagcattgagaagtc 200  Q
    ||| |||||||||||| ||  ||  || |||| |  ||||| |||| |||||||||| | |||| |||||||||| |||||| |||||||||||||||||    
T  28760052 caagggaagtctcttgtaggtgtatttaagcatat-aagtctttaggtagagtcctagagcataaaagtctcttgctgtgtgattgagcattgagaagtc 28759954  T
Q  201 tcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaac 300  Q
    ||||||   ||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||| ||| |  |||| || | |||||||||||||    
T  28759953 tcttggtg-tgtccttaagcaaattgtaatcaagattgattatagtgaaattccttggaagtacaagggaactagcctacttctatgttgtaggaggaac 28759855  T
Q  301 caatataaattg--ttgtgtctttc 323  Q
    || ||| |||||  |||||||||||    
T  28759854 cagtattaattgctttgtgtctttc 28759830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 21391685 - 21391870
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    |||||| |||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||| |  | |||| ||||||||||| |||| ||||||    
T  21391685 gtgcttgagcatacaagtctcttgatgaaaccttgagcacctaggaagtctcagtcagttgtgattaaaaagggtaaagtcttaagcagttgtgcttaag 21391784  T
Q  101 caatggaagtctcttgcagaggtgcttgagcaaaagaagtccttagatagagtcctatatcatagaagtctcttgttgtgtgcttg 186  Q
      | ||||||||||||||  ||| |||||| |||| || |  |||| |||||||||| | |||||||||||| || ||||| ||||    
T  21391785 gtagggaagtctcttgcatgggtacttgagaaaaataattttttaggtagagtcctagagcatagaagtctcatggtgtgtccttg 21391870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 18304054 - 18303749
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    |||||| || |||||| |||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||  || | ||||||| ||   ||||||    
T  18304054 gtgcttgagtatataactctcttggtgaaaccttgagcacctagg-agtctcaatcagttgtaattgagcaagggcgactattaagcagttacgcttaag 18303956  T
Q  101 caa-tggaagtctcttgcagaggtgcttgagcaaaagaagtccttagatagagtcctatatcatagaagtctcttg-ttgtgtgcttgagcattgagaag 198  Q
    |||  |||||| ||||| ||  || ||||| |||   |||||||||| ||||||| || |  ||||||||||||||    ||||||||||||   |||||    
T  18303955 caaggggaagtgtcttggagttgtccttgaacaa---aagtccttaggtagagtcttagagtatagaagtctcttgcaattgtgcttgagcaaaaagaag 18303859  T
Q  199 tctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggagga 298  Q
    ||||||||   ||||||| ||||| ||||    |||| |||||||||||||||||||| |||||  ||||||||| |  ||||| ||| || | ||||||    
T  18303858 tctcttggttgtgtccttgagcaagttgt----aagagtgattatagtgaaatcccttagaagtataaggggactcggctactcatgtgttatgggagga 18303763  T
Q  299 accaatataaattg 312  Q
    ||||||||||||||    
T  18303762 accaatataaattg 18303749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 163 - 310
Target Start/End: Complemental strand, 22747940 - 22747792
Alignment:
Q  163 tagaagtctcttgttgt-gtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaag 261  Q
    |||||||||||||  || ||||||||||||||||||||||||||| |  |||||| || || ||||||||     | |||||||||||||||||||||||    
T  22747940 tagaagtctcttgcagttgtgcttgagcattgagaagtctcttggaagagtccttgagaaatttgtaatcctatgttattatagtgaaatcccttggaag 22747841  T
Q  262 tgcaaggggactggaatactcctgttttgtaggaggaaccaatataaat 310  Q
    ||||||||||||||| ||||| ||| || | ||||||||||||||||||    
T  22747840 tgcaaggggactggactactcttgtgttatgggaggaaccaatataaat 22747792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 238 - 314
Target Start/End: Complemental strand, 26013289 - 26013213
Alignment:
Q  238 gattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaattgtt 314  Q
    |||||||||||||||||||| |||||||||| || |||| |||||||| ||||||||||||||||||||||||||||    
T  26013289 gattatagtgaaatcccttgaaagtgcaaggagattggactactcctggtttgtaggaggaaccaatataaattgtt 26013213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 284
Target Start/End: Original strand, 22797701 - 22797800
Alignment:
Q  185 tgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcct 284  Q
    ||||||| |||||||||||||| | ||||||| || || |||||||||    ||| ||||||||||||||||| |||||||||||||||||| |||||||    
T  22797701 tgagcatagagaagtctcttggaattgtccttgagaaatttgtaatcagttgtgactatagtgaaatcccttgtaagtgcaaggggactggactactcct 22797800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 195 - 309
Target Start/End: Complemental strand, 9823776 - 9823662
Alignment:
Q  195 gaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtagg 294  Q
    |||||||||||| | ||||||| ||||| ||||||||| |  |||| |||||||||||||||| ||||||||||||  |||| |||| |||| |||| ||    
T  9823776 gaagtctcttggaagtgtccttgagcaatttgtaatcatgtgtgatgatagtgaaatcccttgaaagtgcaagggggttggactacttctgtgttgtggg 9823677  T
Q  295 aggaaccaatataaa 309  Q
    ||||| || ||||||    
T  9823676 aggaatcagtataaa 9823662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 179 - 309
Target Start/End: Original strand, 19570230 - 19570360
Alignment:
Q  179 tgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaat 278  Q
    |||| |||||||  || ||||||||||| | | ||||| ||||| |||||||  ||| ||||||||||||||||| ||| |||||||| | ||||||| |    
T  19570230 tgtgattgagcaaagataagtctcttggaagtctccttgagcaatttgtaatttagagtgattatagtgaaatccattgaaagtgcaatgagactggact 19570329  T
Q  279 actcctgttttgtaggaggaaccaatataaa 309  Q
    |||||| | |||| |||||||| ||||||||    
T  19570330 actcctctgttgtgggaggaacaaatataaa 19570360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 22820826 - 22820752
Alignment:
Q  238 gattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaattg 312  Q
    |||||||| |||||| |||||||||||||| |||||||| || || || ||||||||||||||||||||||||||    
T  22820826 gattatagcgaaatctcttggaagtgcaagaggactggactagtcatggtttgtaggaggaaccaatataaattg 22820752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 238 - 312
Target Start/End: Original strand, 24495178 - 24495252
Alignment:
Q  238 gattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaattg 312  Q
    ||||||| |||||||||||| |||||||||||||||||| ||||| ||| |||| |||||||||| |||||||||    
T  24495178 gattataatgaaatcccttgaaagtgcaaggggactggactactcttgtgttgtgggaggaaccagtataaattg 24495252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 238 - 312
Target Start/End: Original strand, 24515516 - 24515589
Alignment:
Q  238 gattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaattg 312  Q
    |||||||||||| |||||||||||||| |||| |||||| ||||||||| |||| ||||||||||||||||||||    
T  24515516 gattatagtgaactcccttggaagtgctaggg-actggactactcctgtgttgtgggaggaaccaatataaattg 24515589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 210 - 291
Target Start/End: Original strand, 12063263 - 12063344
Alignment:
Q  210 tgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgt 291  Q
    ||||||| || || |||||||| ||| ||||||||||||||||||||| ||||||||| |||||||| ||||||||| ||||    
T  12063263 tgtccttgagtaagttgtaatctagagtgattatagtgaaatcccttgaaagtgcaagaggactggagtactcctgtgttgt 12063344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 16525266 - 16525366
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    |||||| | ||||||| ||| |||||||||||||||||||||||| ||| ||| ||| ||||||||||| |||| | ||||||||||| |||| ||||||    
T  16525266 gtgcttgaacatataagtcttttggtgaaaccttgagcacctagg-agtttcaatcaattgtgattgagaaagggaaagtcttaagcagttgtacttaag 16525364  T
Q  101 ca 102  Q
    ||    
T  16525365 ca 16525366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 22748127 - 22748054
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaagg 74  Q
    |||||| |||| |||| ||||||||||||| || |||||||||||||||  |||||||||||||||||||||||    
T  22748127 gtgcttgagcagataagtctcttggtgaaaactagagcacctaggaagttccagtcagttgtgattgagcaagg 22748054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 311
Target Start/End: Original strand, 32452504 - 32452578
Alignment:
Q  237 tgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaatt 311  Q
    |||||||| |||||||||||| ||||| |||||||||||| |||| |||  |||||| | |||||| ||||||||    
T  32452504 tgattataatgaaatcccttgaaagtgtaaggggactggactacttctggattgtagaatgaaccattataaatt 32452578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 17446254 - 17446187
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | ||||||| | ||||||||    
T  17446254 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgtggaaggaacca 17446187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 322
Target Start/End: Original strand, 31419365 - 31419452
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaaccaatataaattgttgtgtcttt 322  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | || |||| | ||||||||  |||| || ||||||||||    
T  31419365 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgtgttgtggaaggaaccaggataacttcttgtgtcttt 31419452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 34063323 - 34063390
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | ||||||| | ||||||||    
T  34063323 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgtggaaggaacca 34063390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 321
Target Start/End: Original strand, 23393103 - 23393189
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaaccaatataaattgttgtgtctt 321  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | | ||||| | ||||||||| |||| |  |||||||||    
T  23393103 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgatttgtggaaggaaccaagataactgcttgtgtctt 23393189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 25936732 - 25936806
Alignment:
Q  235 attgattatagtgaaa-tcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataa 308  Q
    |||||||| ||||||| | |||||||| ||||||||||||  | ||||| ||  |||||||||||||||||||||    
T  25936732 attgattacagtgaaaattccttggaaatgcaaggggactaaactactcttggattgtaggaggaaccaatataa 25936806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 308
Target Start/End: Original strand, 17607762 - 17607835
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaaccaatataa 308  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | || |||| | |||||||| |||||    
T  17607762 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgtgttgtggaaggaaccagtataa 17607835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 308
Target Start/End: Original strand, 17618377 - 17618450
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaaccaatataa 308  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | || |||| | |||||||| |||||    
T  17618377 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgtgttgtggaaggaaccagtataa 17618450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 34052662 - 34052718
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgt 291  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | |||||||    
T  34052662 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgt 34052718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 163; Significance: 5e-87; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 8 - 270
Target Start/End: Complemental strand, 19414344 - 19414082
Alignment:
Q  8 agcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaagcaatgga 107  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||| | ||||  ||||||||  ||    
T  19414344 agcatataagtctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcagtgtaaagtcttaagaagttgtgtttaagcaagcga 19414245  T
Q  108 agtctcttgcagaggtgcttgagcaaaagaagtccttagatagagtcctatatcatagaagtctcttgttgtgtgcttgagcattgagaagtctcttggg 207  Q
    ||||| |||||||||| |||  |||||||||||| |||| || ||||||| | ||||||||||||||| ||| || ||||||||||||||||||||||||    
T  19414244 agtcttttgcagaggttcttcggcaaaagaagtctttaggtatagtcctagagcatagaagtctcttgctgtatggttgagcattgagaagtctcttggg 19414145  T
Q  208 aatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaagggg 270  Q
    | ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19414144 agtgtccttgagaaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaagggg 19414082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 20053047 - 20052738
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    |||||| ||||||||| |||| | |||||||||||||||||||| |||| ||||| |||||||||||||   |||| ||||||||||| |||| ||||||    
T  20053047 gtgcttgagcatataagtctcctagtgaaaccttgagcacctagaaagtgtcagttagttgtgattgagagtggtaaagtcttaagcagttgtgcttaag 20052948  T
Q  101 caatgg-aagtctcttgcagaggtgcttgagcaaaagaagtccttagatagagtcctatatcatagaagtctcttgttgtgtgcttgagcattgagaagt 199  Q
    || ||| ||||||||||||   ||||||||| ||||| |||| ||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  20052947 cattgggaagtctcttgcaagtgtgcttgag-aaaagtagtctttagatagagtcctagagcatagaagtctcttgctgtgtgcttgagcattgagaagt 20052849  T
Q  200 ctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaa 299  Q
    ||||| ||  | ||||| ||||| |||||||| | | |||||||||||||||||||  |||||||||||| ||| || ||||| |||||||| |||||||    
T  20052848 ctctt-ggtgtatccttgagcaagttgtaatcta-agtgattatagtgaaatccctaagaagtgcaagggaactagactactcttgttttgtgggaggaa 20052751  T
Q  300 ccaatataaattg 312  Q
    |||||||||||||    
T  20052750 ccaatataaattg 20052738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 19842914 - 19843227
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    |||||| | ||||||| ||||||||||||||||| |||||||||||||||||| | ||||||||||||||| |||| ||||||||| | |||| |||||     
T  19842914 gtgcttgatcatataagtctcttggtgaaaccttaagcacctaggaagtctcaataagttgtgattgagcagggtaaagtcttaagtagttgtgcttaac 19843013  T
Q  101 caatggaagtctcttgcagaggtgcttgagcaaaagaagtccttagatagagtcctatatcatagaagtctcttg-ttgtgtgcttgagcattgagaagt 199  Q
    ||| |||||||||||||||  || |||||||   ||||||| |||| |||||||||| | |||||||||||||||  | ||||||||||||||||||| |    
T  19843014 caaaggaagtctcttgcaggtgttcttgagc---agaagtctttaggtagagtcctagagcatagaagtctcttgcatatgtgcttgagcattgagaact 19843110  T
Q  200 ctcttgggaatgtcctttagcaaattgtaatcaagattg---attatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggag 296  Q
    ||||| ||  ||||||| || |  |||||||||||| ||   |||||||||||||| | || |||||| |||||||  |  |||| |||| |||| | ||    
T  19843111 ctctt-ggtgtgtccttgagtaggttgtaatcaagagtgattattatagtgaaatcacatgaaagtgctaggggacatggctactactgtgttgtggaag 19843209  T
Q  297 gaaccaatataaattgtt 314  Q
    |||||| |||||||||||    
T  19843210 gaaccagtataaattgtt 19843227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 179 - 301
Target Start/End: Original strand, 19143418 - 19143540
Alignment:
Q  179 tgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaat 278  Q
    ||||||||||||||||||| |||||||| |  |||||| || || |||||||| ||| ||||||||||||||||||||||||||||||||| |||| | |    
T  19143418 tgtgcttgagcattgagaattctcttggaagagtccttgagaaatttgtaatctagagtgattatagtgaaatcccttggaagtgcaagggaactgaact 19143517  T
Q  279 actcctgttttgtaggaggaacc 301  Q
    |||| ||| |||| |||||||||    
T  19143518 actcttgtgttgtgggaggaacc 19143540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 179 - 301
Target Start/End: Original strand, 20742817 - 20742939
Alignment:
Q  179 tgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaat 278  Q
    ||||||||||||||||||| |||||||| |  |||||| || || |||||||| ||| ||||||||||||||||||||||||||||||||| |||| | |    
T  20742817 tgtgcttgagcattgagaattctcttggaagagtccttgagaaatttgtaatctagagtgattatagtgaaatcccttggaagtgcaagggaactgaact 20742916  T
Q  279 actcctgttttgtaggaggaacc 301  Q
    |||| ||| |||| |||||||||    
T  20742917 actcttgtgttgtgggaggaacc 20742939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 2642139 - 2642230
Alignment:
Q  8 agcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||| | |||||||| ||||||||||||||    
T  2642139 agcatataagtctcttggtgaaaccttgagcacctagg-agtctcaatcagttgcgattgagcaagggaaagtcttaatcaattgttcttaag 2642230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 181 - 320
Target Start/End: Complemental strand, 22974714 - 22974575
Alignment:
Q  181 tgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatac 280  Q
    ||||||||||||||||||||||||||    |||||| ||||| |||||||| || | ||||||| | |||||||||||||||||||||||| || | |||    
T  22974714 tgcttgagcattgagaagtctcttggacgagtccttgagcaa-ttgtaatctagttagattatactaaaatcccttggaagtgcaaggggagtgaactac 22974616  T
Q  281 tcctgttttgtaggaggaaccaatataaattg-ttgtgtct 320  Q
    |||| |  ||| |||||||||||||||||||| ||||||||    
T  22974615 tcctatgctgtgggaggaaccaatataaattgcttgtgtct 22974575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 17918395 - 17918301
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttct 96  Q
    |||||| |||| |||| |||||||||||||||||||||||||||| ||||||||| |||||| ||||||||| | | ||||||||||| |||||||    
T  17918395 gtgcttgagcagataagtctcttggtgaaaccttgagcacctagg-agtctcagttagttgtcattgagcaaaggaaagtcttaagcagttgttct 17918301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 17915247 - 17915138
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    |||||| ||||||||| |||||||||||||||||| |||| |||| ||||||| ||| ||||||||||||||||   ||||||||||  |||| ||||||    
T  17915247 gtgcttgagcatataagtctcttggtgaaaccttgtgcacatagg-agtctcaatca-ttgtgattgagcaaggggaagtcttaagctgttgtgcttaag 17915150  T
Q  101 caatggaagtct 112  Q
    ||| ||||||||    
T  17915149 caagggaagtct 17915138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 309
Target Start/End: Complemental strand, 2277751 - 2277626
Alignment:
Q  184 ttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcc 283  Q
    |||||||  |||||| ||||||  | ||||||| || || || |||||| |  |||||||||||||||||  || || ||||||||||||||| |||| |    
T  2277751 ttgagcaaagagaagactcttgaaagtgtccttgagtaatttataatcatgtgtgattatagtgaaatcctatgaaattgcaaggggactggattacttc 2277652  T
Q  284 tgttttgtaggaggaaccaatataaa 309  Q
    ||  ||||||||||||||| ||||||    
T  2277651 tggattgtaggaggaaccagtataaa 2277626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 8309851 - 8309924
Alignment:
Q  238 gattatagtgaaatccctt-ggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaat 310  Q
    ||||||||||||||||||| ||||||||||||||| |||| |||||  | ||||| |||||||| |||||||||    
T  8309851 gattatagtgaaatccctttggaagtgcaaggggattggactactctcggtttgtgggaggaacaaatataaat 8309924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 269
Target Start/End: Original strand, 10974842 - 10974936
Alignment:
Q  175 gttgtgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtg-aaatcccttggaagtgcaaggg 269  Q
    ||||||| ||||| ||||| ||||||||||||  |||||||| |||||||||||||||    ||||||||||| |||||  |||||||||||||||    
T  10974842 gttgtgtacttgaacattg-gaagtctcttggttatgtccttgagcaaattgtaatcagttgtgattatagtgaaaatcaattggaagtgcaaggg 10974936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 237 - 318
Target Start/End: Complemental strand, 17915073 - 17914990
Alignment:
Q  237 tgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggagg-aaccaatat-aaattgttgtgt 318  Q
    |||||||||||||||| |||| ||||||||||||| |||| ||||||||  | |||||||| ||||| ||| ||||||||||||    
T  17915073 tgattatagtgaaatctcttgaaagtgcaaggggaatggactactcctggatagtaggaggaaaccagtataaaattgttgtgt 17914990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 19143226 - 19143287
Alignment:
Q  13 ataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaagg 74  Q
    |||| ||||||| |||||||||||||| |||||||||| || |||||||||  |||||||||    
T  19143226 ataagtctcttgctgaaaccttgagcaactaggaagtcacaatcagttgtggctgagcaagg 19143287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 20742625 - 20742686
Alignment:
Q  13 ataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaagg 74  Q
    |||| ||||||| |||||||||||||| |||||||||| || |||||||||  |||||||||    
T  20742625 ataagtctcttgctgaaaccttgagcaactaggaagtcacaatcagttgtggctgagcaagg 20742686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 15888991 - 15889058
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | ||||||| | ||||||||    
T  15888991 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgtggaaggaacca 15889058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 20490644 - 20490577
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | ||||||| | ||||||||    
T  20490644 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgtggaaggaacca 20490577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 31117173 - 31117240
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | ||||||| | ||||||||    
T  31117173 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgtggaaggaacca 31117240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 4876117 - 4876075
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcaccta 43  Q
    |||||| ||||||||| ||||||||| ||||||||||||||||    
T  4876117 gtgcttgagcatataagtctcttggtaaaaccttgagcaccta 4876075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 300
Target Start/End: Original strand, 5290752 - 5290813
Alignment:
Q  240 ttatagtgaa-atcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaac 300  Q
    |||||||||| ||||||| ||||||||||||||||||| |||||  | ||||| ||||||||    
T  5290752 ttatagtgaacatcccttagaagtgcaaggggactggactactctcgatttgtgggaggaac 5290813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 308
Target Start/End: Complemental strand, 1782572 - 1782500
Alignment:
Q  237 tgattatagtgaa-atcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataa 308  Q
    ||||||||||||| ||| ||||||||||||| ||||||| | |||||||   |||| |||||||||| |||||    
T  1782572 tgattatagtgaatatctcttggaagtgcaatgggactgaattactcctaaattgtcggaggaaccagtataa 1782500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 3856502 - 3856546
Alignment:
Q  238 gattatagtgaaatcccttggaagtgcaaggggactggaatactc 282  Q
    ||||||||||||||| |||| ||||||||||||| |||| |||||    
T  3856502 gattatagtgaaatctcttgaaagtgcaaggggattggactactc 3856546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 79007 - 78815
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    |||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| ||||||||||| |||||||||||    
T  79007 gtgcttgagcatataagtctcttggtgaaaccttgagcccctaggaagtctcagtcagttgtgattgagaagggtaaagtcttaagcagttgttcttaag 78908  T
Q  101 caatggaagtctcttgcagaggtgcttgagc-aaaagaagtccttagatagagtcctatatcatagaagtctcttgttgtgtgcttgagcatt 192  Q
    ||| |||||||||||| || ||||||||||| |||| ||||| |||| |||||||||| | ||||||||| ||||| ||||||||||||||||    
T  78907 caagggaagtctcttgaaggggtgcttgagcaaaaataagtctttaggtagagtcctagagcatagaagtttcttgctgtgtgcttgagcatt 78815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 239 - 312
Target Start/End: Complemental strand, 78817 - 78744
Alignment:
Q  239 attatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaattg 312  Q
    |||||||| |||||||||||||||||||| |||||||| ||||| ||| ||||||||||||| | |||||||||    
T  78817 attatagtaaaatcccttggaagtgcaagaggactggactactcatgtgttgtaggaggaactattataaattg 78744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 20396615 - 20396303
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    |||||| |||| |||| |||||||  |||  |||||||| ||||||||||||| |||||| |||||||||| |||| || ||||||||  ||| | ||||    
T  20396615 gtgcttgagcagataagtctcttgacgaattcttgagcaactaggaagtctcaatcagttttgattgagcagggtaaagacttaagcagctgtgcataag 20396516  T
Q  101 caatggaagtctcttgcagaggtgcttgagcaaaagaagtccttagatagagtcctatatcatagaagtctcttgttgt-gtgcttgagcattgagaagt 199  Q
    |||   ||||||||||||  ||| ||| || |||||||||| |||| |||||||||| | ||||||||||||| |  || || |||||||||||||||||    
T  20396515 caagcaaagtctcttgcacgggttctt-agaaaaagaagtctttaggtagagtcctagagcatagaagtctctcgcagttgtacttgagcattgagaagt 20396417  T
Q  200 ctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaa 299  Q
    ||||||  | ||||||| ||||||||||||||||||||| ||||| | |||||||||||||||||||||| |||||| |||||| |||||||||||||||    
T  20396416 ctcttgcta-tgtccttgagcaaattgtaatcaagattggttatactaaaatcccttggaagtgcaagggtactggactactcccgttttgtaggaggaa 20396318  T
Q  300 ccaatataaattgtt 314  Q
    | | |||||| ||||    
T  20396317 ctagtataaactgtt 20396303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 106 - 314
Target Start/End: Complemental strand, 20395876 - 20395668
Alignment:
Q  106 gaagtctcttgcagaggtgcttgagcaaaagaagtccttagatagagtcctatatcatagaagtctcttgttgtg-tgcttgagcattgagaagtctctt 204  Q
    ||||| |||||||  ||| ||| ||||||||||||| |||| |||||||||| | | ||||||||| | |  ||  ||||||||||||||||||||||||    
T  20395876 gaagtatcttgcacgggtccttaagcaaaagaagtctttaggtagagtcctagagcgtagaagtctgtcgcagttatgcttgagcattgagaagtctctt 20395777  T
Q  205 gggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaat 304  Q
    || | ||||||| || |||||||||||||||||| ||||| | |||| |||||||||||||||||||||||| |||||| ||||| |||||||||||| |    
T  20395776 ggta-tgtccttaagaaaattgtaatcaagattggttatactaaaattccttggaagtgcaaggggactggactactcccgttttctaggaggaaccagt 20395678  T
Q  305 ataaattgtt 314  Q
    ||||| ||||    
T  20395677 ataaactgtt 20395668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 106 - 300
Target Start/End: Complemental strand, 20396194 - 20396000
Alignment:
Q  106 gaagtctcttgcagaggtgcttgagcaaaagaagtccttagatagagtcctatatcatagaagtctcttgttgtg-tgcttgagcattgagaagtctctt 204  Q
    ||||| |||||||  ||| ||| |||||||||||| ||||| |||||||||| | ||||||| ||||| |  ||  ||||||||||||||||||||||||    
T  20396194 gaagtatcttgcacgggtccttaagcaaaagaagtgcttaggtagagtcctacaacatagaaatctctcgcagttatgcttgagcattgagaagtctctt 20396095  T
Q  205 gggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaac 300  Q
    || | | ||||| ||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| || | |||  ||||| ||||||||||    
T  20396094 ggtatt-tccttaagcaaattgtaatcaagattggttatactaaaatcccttggaagtgcaaggggactcgactcctctcgttttctaggaggaac 20396000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 19731151 - 19730845
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    |||||| ||||||||| ||||||||||||| |||||||| |||  | |||| | || ||||||||||||||||    ||||||||| | |||| ||||||    
T  19731151 gtgcttgagcatataactctcttggtgaaaacttgagcatctatca-gtctgaatccgttgtgattgagcaagaggaagtcttaagtagttgtgcttaag 19731053  T
Q  101 caatg-gaagtctcttgcagaggtgcttgagcaaaagaagtccttagatagagtcctatatcatagaagtctcttgttgt-gtgcttgagcattgagaag 198  Q
    ||| | ||||||||||  ||  || ||||||||   |||||| |||| |||||||||| | |||| ||||||||||  || |||||||||||| ||||||    
T  19731052 caaagtgaagtctcttagagttgtccttgagca---gaagtctttaggtagagtcctagaacatataagtctcttgcagttgtgcttgagcatagagaag 19730956  T
Q  199 tctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggagga 298  Q
    |||||||| | ||||||| | ||| ||||||||  |   ||||||||||||||||||||||| ||||| | |||| || ||||  ||  |||||||| ||    
T  19730955 tctcttggaagtgtccttaatcaatttgtaatcctgtgagattatagtgaaatcccttggaaatgcaatgtgactagactacttttggattgtaggatga 19730856  T
Q  299 accaatataaa 309  Q
    |||| ||||||    
T  19730855 accagtataaa 19730845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 129 - 314
Target Start/End: Complemental strand, 20395498 - 20395313
Alignment:
Q  129 agcaaaagaagtccttagatagagtcctatatcatagaagtctcttgttgtg-tgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgt 227  Q
    ||||||||||||| |||| |||||||||| | ||||||||||||| |   |  | |||||||||||| ||||||||||| | |||||||||  |||||||    
T  20395498 agcaaaagaagtctttaggtagagtcctagagcatagaagtctctcgcaattattcttgagcattgataagtctcttggta-tgtcctttactaaattgt 20395400  T
Q  228 aatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaattgtt 314  Q
    ||||| ||||| ||||| | ||||||||| |||||||||| |||||||| |||||| ||||| |||||| ||||| |||||| ||||    
T  20395399 aatcatgattggttatactaaaatcccttagaagtgcaagaggactggactactcccgttttctaggagaaaccagtataaactgtt 20395313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 162 - 318
Target Start/End: Original strand, 21689460 - 21689618
Alignment:
Q  162 atagaagtctcttgttgt-gtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaa 260  Q
    ||||||||||||||| || |||||||||||| |  ||||||||||| |||||| || ||||| |||||||||    ||||||||||||||||||||||||    
T  21689460 atagaagtctcttgtagttgtgcttgagcataggcaagtctcttggaaatgtctttgagcaatttgtaatcagttgtgattatagtgaaatcccttggaa 21689559  T
Q  261 gtgcaaggggactggaatactcctgttttgtaggaggaaccaatat-aaattgttgtgt 318  Q
    ||| |||||||||||| |||||||   ||||| ||||||||| ||| ||||||||||||    
T  21689560 gtggaaggggactggactactccttgattgtaagaggaaccagtataaaattgttgtgt 21689618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 27165854 - 27165972
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    |||||| || |||||| |||||| |||||| |||| ||||||||||||||||||||||||||||||||| | |||| | |||| || | |||| ||||||    
T  27165854 gtgcttgagtatataagtctcttagtgaaatcttgggcacctaggaagtctcagtcagttgtgattgagtagggtaaaatcttgagaagttgtgcttaag 27165953  T
Q  101 caatggaagtctcttgcag 119  Q
    ||| |||||||||||||||    
T  27165954 caagggaagtctcttgcag 27165972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 183 - 312
Target Start/End: Original strand, 27167314 - 27167441
Alignment:
Q  183 cttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactc 282  Q
    ||||||||||||||||||||||||   ||||||| |||||||||||||| | | |||||||||||||||||||| ||||| |||||  ||| || |||||    
T  27167314 cttgagcattgagaagtctcttggtg-tgtccttaagcaaattgtaatcca-agtgattatagtgaaatcccttagaagtccaaggatactagactactc 27167411  T
Q  283 ctgttttgtaggaggaaccaatataaattg 312  Q
    | || |||||||| ||||||||||||||||    
T  27167412 cggtgttgtaggatgaaccaatataaattg 27167441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 179 - 309
Target Start/End: Complemental strand, 34659481 - 34659351
Alignment:
Q  179 tgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaat 278  Q
    ||||||||| ||  |||||||||| ||| | ||||||| |||||   |||||| | | |||||||||||||||||||| ||||| ||||||||||||| |    
T  34659481 tgtgcttgaacaaagagaagtctcctggaagtgtccttgagcaatgcgtaatccatagtgattatagtgaaatcccttagaagtacaaggggactggact 34659382  T
Q  279 actcctgttttgtaggaggaaccaatataaa 309  Q
    |||| ||| |||| |||||||||| ||||||    
T  34659381 actcttgtgttgtgggaggaaccagtataaa 34659351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 238 - 310
Target Start/End: Complemental strand, 10481603 - 10481531
Alignment:
Q  238 gattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaat 310  Q
    ||||||||||||||||||||||| ||||||||||||| | ||||||||| |||| ||||||||||| ||||||    
T  10481603 gattatagtgaaatcccttggaaatgcaaggggactgaactactcctgtgttgtgggaggaaccaaaataaat 10481531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 10815292 - 10815427
Alignment:
Q  178 gtgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaa 277  Q
    |||||||| | ||||  |||||||||||| ||||||||| ||||| |||||||| ||    |||||||||||||||||||||| | |||||||||||||     
T  10815292 gtgtgcttaaacatttggaagtctcttggcaatgtccttgagcaa-ttgtaatctagtgatattatagtgaaatcccttggaattacaaggggactggac 10815390  T
Q  278 tactcctgttttgtaggaggaaccaatataaattgtt 314  Q
    |||||||  ||| ||| |||||| | |||||||||||    
T  10815391 tactcctaatttttagaaggaactagtataaattgtt 10815427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 310
Target Start/End: Complemental strand, 4312091 - 4311977
Alignment:
Q  195 gaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtagg 294  Q
    ||||||||||||   ||||||| ||||| |||||||| ||   | ||||||||||||||||||||||||||| | |||| || |||||||  ||||||||    
T  4312091 gaagtctcttggaggtgtccttgagcaa-ttgtaatccagtgaggttatagtgaaatcccttggaagtgcaatgagactagattactcctagtttgtagg 4311993  T
Q  295 aggaaccaatataaat 310  Q
    ||||||||||||||||    
T  4311992 aggaaccaatataaat 4311977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 17208681 - 17208580
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    |||||| |||| |||| |||||||||||||||||||| ||||||| |||| |||||||||| | |||||||||  | ||||||||||| |||| ||||||    
T  17208681 gtgcttgagcagataagtctcttggtgaaaccttgagtacctagg-agtcgcagtcagttgcggttgagcaagagaaagtcttaagcagttgtgcttaag 17208583  T
Q  101 caa 103  Q
    |||    
T  17208582 caa 17208580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 309
Target Start/End: Complemental strand, 17206467 - 17206318
Alignment:
Q  161 catagaagtctcttgttgt-gtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttgga 259  Q
    ||||||||| |||||| || ||||||||||||||||||||| ||||| |  |||||| | ||   ||||||| ||| ||||| | |||||||||||||||    
T  17206467 catagaagtttcttgtagttgtgcttgagcattgagaagtcacttggaagagtccttgatcagtatgtaatccagagtgattgtggtgaaatcccttgga 17206368  T
Q  260 agtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaa 309  Q
    |||||||| || ||| | ||||||| | |||| |||||||| | ||||||    
T  17206367 agtgcaagtgggctgaactactcctatattgtgggaggaactagtataaa 17206318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 240315 - 240374
Alignment:
Q  13 ataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaa 72  Q
    |||| ||||||||||||||||||||||  |||||||||||| ||||||||| ||||||||    
T  240315 ataagtctcttggtgaaaccttgagcatttaggaagtctcaatcagttgtggttgagcaa 240374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 18385972 - 18385929
Alignment:
Q  24 ggtgaaaccttgagcacctaggaagtctcagtcagttgtgattg 67  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  18385972 ggtgaaaccttgagcacctaggaagtctcagtcatttgtgattg 18385929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 314
Target Start/End: Complemental strand, 19490368 - 19490300
Alignment:
Q  246 tgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaattgtt 314  Q
    |||||| |||||||| ||| ||||||||||| ||||||| | |||| |||||||||| |||||||||||    
T  19490368 tgaaattccttggaaatgctaggggactggactactcctatgttgtgggaggaaccagtataaattgtt 19490300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 10404132 - 10404199
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | ||||||| | ||||||||    
T  10404132 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgtggaaggaacca 10404199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 308
Target Start/End: Original strand, 30701937 - 30702008
Alignment:
Q  237 tgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataa 308  Q
    |||||||||||||||   ||||||||||||||||| || |||||||  | ||||| |||||||||| |||||    
T  30701937 tgattatagtgaaatatgttggaagtgcaaggggattgaaatactctcggtttgtgggaggaaccagtataa 30702008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 312
Target Start/End: Original strand, 22563296 - 22563369
Alignment:
Q  238 gattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaattg 312  Q
    ||||||| | |||||||||||||||||||| ||| || | ||| |||  ||||| ||||||||||||||||||||    
T  22563296 gattatattaaaatcccttggaagtgcaagaggattgtactacacctagtttgt-ggaggaaccaatataaattg 22563369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 321
Target Start/End: Original strand, 30120486 - 30120572
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaaccaatataaattgttgtgtctt 321  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | | ||||| | ||||||||| |||| |  |||||||||    
T  30120486 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgatttgtggaaggaaccaagataactacttgtgtctt 30120572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 11704777 - 11704728
Alignment:
Q  265 aaggggactggaatactcctgttttgtaggaggaaccaatataaattgtt 314  Q
    |||||||||||| |||||||| ||||||||||||||   |||||||||||    
T  11704777 aaggggactggactactcctgatttgtaggaggaacgggtataaattgtt 11704728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 14070697 - 14070734
Alignment:
Q  165 gaagtctcttgttgtgtgcttgagcattgagaagtctc 202  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  14070697 gaagtctcttgttgtgtgcttgagcattttgaagtctc 14070734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 312
Target Start/End: Complemental strand, 21034492 - 21034399
Alignment:
Q  222 aattgtaatca-agattgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaaccaatataaattg 312  Q
    ||||||||||| | ||||||| ||||||| || |||||||||||||| ||||| |||| |||| |||| |||| | |||||||| |||||||||    
T  21034492 aattgtaatcagatattgattttagtgaactctccttggaagtgcaagggggagtggactacttctgtattgtggaaggaaccactataaattg 21034399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 28252154 - 28252222
Alignment:
Q  236 ttgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    ||||||||||||||||| |||||||||||||| |||||||||| |||| | || |||| | ||||||||    
T  28252154 ttgattatagtgaaatctccttggaagtgcaagggggactggactacttccgtgttgtggaaggaacca 28252222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 28357301 - 28357369
Alignment:
Q  236 ttgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    ||||||||||||||||| |||||||||||||| |||||||||| |||| | || |||| | ||||||||    
T  28357301 ttgattatagtgaaatctccttggaagtgcaagggggactggactacttccgtgttgtggaaggaacca 28357369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 11766 - 11437
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    |||||| ||||||||| |||||||  ||| |||| ||||| ||||||||||||||||||||| |||||||| |||| ||||||||||    || ||||||    
T  11766 gtgcttgagcatataagtctcttgacgaagccttaagcacataggaagtctcagtcagttgttattgagcagggtaaagtcttaagcttgcgtgcttaag 11667  T
Q  101 caatgg-aagtctcttgcagaggtgcttgagcaaaagaagtccttagatagagtcctatatcatagaagtctcttgttgt-gtgcttgagcattgagaag 198  Q
    ||| |  |||||||||| ||   ||||||| |||| |||||| |||| |||||||||| | ||||||||||| |||  || |||||||||||||||||||    
T  11666 caaagataagtctcttgtaggaatgcttgatcaaa-gaagtctttaggtagagtcctagagcatagaagtcttttgcagttgtgcttgagcattgagaag 11568  T
Q  199 tctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggagga 298  Q
    ||||||||| |||||||| || ||||||||||| |  | |||||||||||||| | ||||||| ||||| |||||  |||||||||  ||||||||||||    
T  11567 tctcttgggtatgtccttgagaaaattgtaatccatgt-gattatagtgaaattcgttggaagagcaagtggactaaaatactcctagtttgtaggagga 11469  T
Q  299 accaatataaattgtt--gtgtctttcatctc 328  Q
    |||| |||||||||||  ||||||||| ||||    
T  11468 accattataaattgtttagtgtctttcttctc 11437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 8 - 309
Target Start/End: Complemental strand, 1352 - 1051
Alignment:
Q  8 agcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaagcaatg-g 106  Q
    ||||||||| ||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||| | ||||||||||| |||  ||||| ||| | |    
T  1352 agcatataagtctcttggtgaaaccttgagcacgtaggaagtctgagttagttgtgattgagcaagggaaagtcttaagcagttgggcttaaacaaagag 1253  T
Q  107 aagtctcttgcagaggtgcttgagcaaaagaagtccttagatagagtcctatatcatagaagtctcttgttgt-gtgcttgagcattgagaagtctcttg 205  Q
    |||||||||| ||   | ||||||||   |||||| |||| || ||||||| |  ||||||||||||||  || |||||||||||||| |||||||||||    
T  1252 aagtctcttggagttttccttgagcat--gaagtctttaggtatagtcctagaaaatagaagtctcttgcagttgtgcttgagcattgcgaagtctcttg 1155  T
Q  206 ggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaata 305  Q
    | | ||||||| || || ||||||||  |  |||| ||||||||||| |||||||||| |||| ||||||| ||||||||  ||||||||||||||||||    
T  1154 gaagtgtccttgagaaatttgtaatcgtgtgtgatcatagtgaaatctcttggaagtgtaaggagactggactactcctggattgtaggaggaaccaata 1055  T
Q  306 taaa 309  Q
    ||||    
T  1054 taaa 1051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 39981004 - 39981301
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    |||||| ||||||||| | |||||||||||| |||||||| ||||||||||||||||||| ||||||||||||| | ||||||||||| || | ||||||    
T  39981004 gtgcttgagcatataagtatcttggtgaaacattgagcacttaggaagtctcagtcagttctgattgagcaagggaaagtcttaagcagttatgcttaag 39981103  T
Q  101 caat-ggaagtctcttgcagaggtgcttgagcaaaagaagtccttagatagagtcctatatcatagaagtctcttgttg-tgtgcttgagcattgagaag 198  Q
    |||| |||||| ||||| ||  ||  ||| ||  | |||||| |||| || ||||||| | |||| |||| |||||  | ||||||||||||  ||||||    
T  39981104 caatgggaagtttcttggagttgtctttgggc--aggaagtctttaggtaaagtcctagagcataaaagtgtcttgcagttgtgcttgagcaaagagaag 39981201  T
Q  199 tctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggagga 298  Q
    |||||||  ||||||||| ||||  ||||||||     ||||||||||||||| ||||||||||||||| |||||||| ||||||||  |||||| ||||    
T  39981202 tctcttgaaaatgtccttgagcattttgtaatcctttatgattatagtgaaattccttggaagtgcaagtggactggactactcctggattgtagaagga 39981301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 183 - 309
Target Start/End: Original strand, 22317303 - 22317429
Alignment:
Q  183 cttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactc 282  Q
    ||||||||  ||||||| || ||| | ||||||| ||||| |||||||| ||| |||||||||||||||||||||||||||||| | ||||||| |||||    
T  22317303 cttgagcaaagagaagtgtcctggaagtgtccttgagcaatttgtaatccagagtgattatagtgaaatcccttggaagtgcaatgagactggactactc 22317402  T
Q  283 ctgttttgtaggaggaaccaatataaa 309  Q
    |||  ||||||||||||||| ||||||    
T  22317403 ctggattgtaggaggaaccagtataaa 22317429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 165 - 318
Target Start/End: Original strand, 17474628 - 17474780
Alignment:
Q  165 gaagtctcttg-ttgtgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtg 263  Q
    ||||||||||| |||||| |||||| ||| |||||||||||| || ||||||| ||||| |||||||   |  ||||||||||||||||| |||||| ||    
T  17474628 gaagtctcttgcttgtgtacttgagtatttagaagtctcttgagagtgtccttgagcaa-ttgtaatattgtgtgattatagtgaaatcctttggaattg 17474726  T
Q  264 caaggggactggaatactcctgttttgtaggaggaaccaatataaattgttgtgt 318  Q
     |||||| || || ||||| ||| |||||||||||||||||||||||||| ||||    
T  17474727 taagggg-ctagactactcatgtattgtaggaggaaccaatataaattgtggtgt 17474780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 180 - 309
Target Start/End: Original strand, 22223399 - 22223526
Alignment:
Q  180 gtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaata 279  Q
    |||||||||||||| |||||||| ||| |  |||||| ||||| ||||||| | |   |||||||||||||||||||||||||||||| ||||| || ||    
T  22223399 gtgcttgagcattgggaagtctcgtggaagagtccttcagcaa-ttgtaat-atgtgagattatagtgaaatcccttggaagtgcaagaggacttgacta 22223496  T
Q  280 ctcctgttttgtaggaggaaccaatataaa 309  Q
    ||||||| |||| |||||||||| ||||||    
T  22223497 ctcctgtgttgtgggaggaaccagtataaa 22223526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 282
Target Start/End: Complemental strand, 19052839 - 19052737
Alignment:
Q  179 tgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaat 278  Q
    ||||||||||||||   || ||||||||   ||||||| ||||| ||||||||  |  |||||||||||||||||||||||||||||||||||||||| |    
T  19052839 tgtgcttgagcatttgaaattctcttggttgtgtccttgagcaa-ttgtaatcttgtgtgattatagtgaaatcccttggaagtgcaaggggactggact 19052741  T
Q  279 actc 282  Q
    ||||    
T  19052740 actc 19052737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 312
Target Start/End: Complemental strand, 18445437 - 18445305
Alignment:
Q  178 gtgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaa 277  Q
    |||||||||||||||  |||||||||||| |  |||||| ||||| ||||||||  |   ||||||||  |||||||||||||||||||| ||||||||     
T  18445437 gtgtgcttgagcatttggaagtctcttggaagagtccttgagcaa-ttgtaatct-gtgagattataggaaaatcccttggaagtgcaagaggactggac 18445340  T
Q  278 tactcctgttttgtaggaggaaccaatataaattg 312  Q
    ||||| ||| || | |||||||| |||||||||||    
T  18445339 tactcatgtgttctgggaggaactaatataaattg 18445305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 8911107 - 8911036
Alignment:
Q  237 tgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaa 309  Q
    |||||||||||||||||||| |||||| |||||| ||||| ||||||||| |||| |||||||||| ||||||    
T  8911107 tgattatagtgaaatcccttagaagtgtaagggg-ctggattactcctgtgttgtgggaggaaccagtataaa 8911036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 273
Target Start/End: Original strand, 18777222 - 18777353
Alignment:
Q  143 ttagatagagtcctatatcatagaagtctcttgttgt-gtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgatt 241  Q
    |||| ||| |||||| | |||||||||||||||  || ||| |||||||||||||| ||||||||   ||||||| ||||| |||||||  | | |||||    
T  18777222 ttaggtagtgtcctagaacatagaagtctcttgcagttgtgtttgagcattgagaaatctcttggtg-tgtccttgagcaagttgtaattcaaagtgatt 18777320  T
Q  242 atagtgaaatcccttggaagtg-caaggggact 273  Q
    ||||||||||||||||||| || ||||||||||    
T  18777321 atagtgaaatcccttggaaatgccaaggggact 18777353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 312
Target Start/End: Original strand, 21810468 - 21810615
Alignment:
Q  165 gaagtctcttg-ttgtgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtg 263  Q
    ||||||||||| |||||||||| ||||||  ||||| |||| | | | ||||| ||||| ||||| || ||  || |||||||||||| ||||| |||||    
T  21810468 gaagtctcttgcttgtgtgcttaagcatttggaagtgtcttagaagtatccttgagcaa-ttgtactctagtgtgcttatagtgaaataccttgaaagtg 21810566  T
Q  264 caaggggactggaatactcctgttttgtaggaggaaccaatataaattg 312  Q
    |||| |||||  | |||||||| |||||||||||||||  |||||||||    
T  21810567 caagaggactttactactcctggtttgtaggaggaacctgtataaattg 21810615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 304
Target Start/End: Original strand, 21589034 - 21589100
Alignment:
Q  238 gattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaat 304  Q
    |||||||||||||||| |||||||||||| | ||||||| ||||||||| || | ||||||||||||    
T  21589034 gattatagtgaaatcctttggaagtgcaaagagactggactactcctgtgttttgggaggaaccaat 21589100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 314
Target Start/End: Original strand, 19556068 - 19556143
Alignment:
Q  238 gattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaattgtt 314  Q
    |||||||||||||| | |||||||||||| ||||||||| ||||  ||| |||| |||||||||| |||||||||||    
T  19556068 gattatagtgaaattcattggaagtgcaacgggactggactact-ttgtgttgtgggaggaaccagtataaattgtt 19556143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 321
Target Start/End: Original strand, 14836690 - 14836776
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaag-gggactggaatactcctgttttgtaggaggaaccaatataaattgttgtgtctt 321  Q
    |||||||||||||||| ||||||||||||||| ||||||||| |||| | ||||||| | ||||||||  ||||||  |||||||||    
T  14836690 tgattatagtgaaatctccttggaagtgcaagagggactggactacttccgttttgtggaaggaaccaggataaatgcttgtgtctt 14836776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 8911307 - 8911234
Alignment:
Q  2 tgcttaagcatataattctcttggtgaaa-ccttgagcacctaggaagtctcagtcagttgtgattgagcaagg 74  Q
    ||||| |||||| || ||||||||| ||| |||||||||  |||||||| ||| ||||||||||||||||||||    
T  8911307 tgcttgagcatacaagtctcttggtaaaatccttgagcagttaggaagtatcaatcagttgtgattgagcaagg 8911234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 20243497 - 20243440
Alignment:
Q  248 aaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaata 305  Q
    |||| ||||||||||||||||||| |||| |||||||  ||||||| |||||||||||    
T  20243497 aaattccttggaagtgcaaggggattggagtactcctagtttgtagaaggaaccaata 20243440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 313
Target Start/End: Original strand, 5718872 - 5718948
Alignment:
Q  237 tgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaattgt 313  Q
    |||||||||||||||  |||||||||| |||||||||| | |||||  | |||||  ||||||||||||||| ||||    
T  5718872 tgattatagtgaaatttcttggaagtgaaaggggactgaactactctcggtttgtttgaggaaccaatataatttgt 5718948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 5873043 - 5872976
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | | ||||| ||||||||||    
T  5873043 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgatttgtgggaggaacca 5872976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 8183528 - 8183595
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| |||| |||| | ||||||||    
T  8183528 tgattatagtgaaatctccttggaagtgcaagggggactggactacttctgtgttgtggaaggaacca 8183595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 10695313 - 10695246
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | ||||||| | ||||||||    
T  10695313 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgtggaaggaacca 10695246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 10909079 - 10909012
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | ||||||| | ||||||||    
T  10909079 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgtggaaggaacca 10909012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 18078496 - 18078563
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| |||| |||| | ||||||||    
T  18078496 tgattatagtgaaatctccttggaagtgcaagggggactggactacttctgtgttgtggaaggaacca 18078563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 19570688 - 19570621
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | ||||||| | ||||||||    
T  19570688 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgtggaaggaacca 19570621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 19555786 - 19555840
Alignment:
Q  13 ataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgag 69  Q
    |||| |||||||||||||| |||||||||  ||||||||| | ||||||||||||||    
T  19555786 ataaatctcttggtgaaactttgagcacc--ggaagtctctggcagttgtgattgag 19555840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 12450234 - 12450174
Alignment:
Q  248 aaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataa 308  Q
    ||||||||||||| |||||| ||||| || |||||||  ||||| | ||||||||||||||    
T  12450234 aaatcccttggaaatgcaagaggactagactactcctaatttgtggaaggaaccaatataa 12450174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 300
Target Start/End: Original strand, 15366279 - 15366343
Alignment:
Q  237 tgattatagtgaaa-tcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaac 300  Q
    |||||||||||||| || |||  ||||| |||||||||||| ||||||||  |||||||||||||    
T  15366279 tgattatagtgaaactctcttataagtggaaggggactggactactcctggattgtaggaggaac 15366343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 21588751 - 21588808
Alignment:
Q  11 atataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagc 70  Q
    |||||| ||||||| |||||||||||||||| |  |||||||| ||||||||| ||||||    
T  21588751 atataaatctcttgttgaaaccttgagcaccaa--aagtctcattcagttgtgtttgagc 21588808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 22223210 - 22223259
Alignment:
Q  20 tcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagca 71  Q
    |||||||||||| |||||||||   ||||||| |||||||||||||||||||    
T  22223210 tcttggtgaaactttgagcacca--gaagtcttagtcagttgtgattgagca 22223259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 24715510 - 24715470
Alignment:
Q  236 ttgattatagtgaaatcccttggaagtgcaaggggactgga 276  Q
    ||||||||||||||||| ||| |||||||||||||| ||||    
T  24715510 ttgattatagtgaaatcgctttgaagtgcaaggggaatgga 24715470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 9 - 312
Target Start/End: Complemental strand, 5825553 - 5825252
Alignment:
Q  9 gcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaagcaatggaa 108  Q
    |||||||| | ||||| | || ||||||| |||||||| ||||| |||||||||||| ||||| |||| ||||||||||| |||| ||||||||| ||||    
T  5825553 gcatataagtatcttgataaagccttgagtacctaggaggtctctgtcagttgtgatcgagcagggtaaagtcttaagcagttgtgcttaagcaagggaa 5825454  T
Q  109 gtctcttgcagaggtgcttgagcaaaagaagtccttagatagagtcctatatcatagaagtctcttgttgt-gtgcttgagcattgagaagtctcttggg 207  Q
     ||| ||| ||  || ||||| ||   |||||| |||| || ||||||| | |||||||||||||||  || ||| |||||||||||||| ||||||||     
T  5825453 ctcttttggagttgtccttgaacat--gaagtctttaggtaaagtcctagagcatagaagtctcttgcagttgtgtttgagcattgagaattctcttggt 5825356  T
Q  208 aatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatata 307  Q
      | ||||| ||||| |||||||| ||| |||||||||||||||||| || ||||| |||||||||||| ||||| ||| |||| | |||||||| | ||    
T  5825355 g-tatccttgagcaagttgtaatcgagagtgattatagtgaaatcccctgaaagtgaaaggggactggactactcatgtgttgtggaaggaaccagtcta 5825257  T
Q  308 aattg 312  Q
    |||||    
T  5825256 aattg 5825252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 179 - 309
Target Start/End: Complemental strand, 18565484 - 18565354
Alignment:
Q  179 tgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaat 278  Q
    ||||||||||||  |||||||||||||| | ||||||| ||||| |||||||| | | ||||||||||||||||| |||||| ||||||||||||||| |    
T  18565484 tgtgcttgagcaaagagaagtctcttggtagtgtccttgagcaagttgtaatccatagtgattatagtgaaatccattggaaatgcaaggggactggact 18565385  T
Q  279 actcctgttttgtaggaggaaccaatataaa 309  Q
    |||| ||| |||| |||||||| | ||||||    
T  18565384 actcttgtgttgtgggaggaactagtataaa 18565354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 206
Target Start/End: Complemental strand, 5825954 - 5825758
Alignment:
Q  9 gcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaagcaatggaa 108  Q
    |||||||| | ||||| | || ||||||| |||||||| ||||| |||||||||||| |||||||||| | ||||||||| || | ||||||||| ||||    
T  5825954 gcatataagtatcttgataaagccttgagtacctaggaggtctctgtcagttgtgatcgagcaaggtaaaatcttaagcatttatgcttaagcaaaggaa 5825855  T
Q  109 gtctcttgcagaggtgcttgagcaaaagaagtccttagatagagtcctatatcatagaagtctcttgttg-tgtgcttgagcattgagaagtctcttgg 206  Q
    |||| ||| ||  || |||||||  | |||||| |||| || ||||||| | |||| |||||| |||  | ||||||||||||||||||| ||||||||    
T  5825854 gtcttttggagttgtccttgagc--atgaagtctttaggtaaagtcctagagcatataagtcttttgcagttgtgcttgagcattgagaattctcttgg 5825758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 162 - 284
Target Start/End: Original strand, 211406 - 211528
Alignment:
Q  162 atagaagtctcttgttgt-gtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaa 260  Q
    |||||||| |||||| || |||||||||||| | |||||||||||| | ||||||| ||||| |||||||||   |||||||||||||||||||||||||    
T  211406 atagaagtatcttgtagttgtgcttgagcatagggaagtctcttggaagtgtccttgagcaatttgtaatcagttttgattatagtgaaatcccttggaa 211505  T
Q  261 gtgcaaggggactggaatactcct 284  Q
    | ||| ||||| |||| |||||||    
T  211506 g-gcatggggattggactactcct 211528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 162 - 284
Target Start/End: Complemental strand, 240850 - 240728
Alignment:
Q  162 atagaagtctcttgttgt-gtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaa 260  Q
    |||||||| |||||| || |||||||||||| | |||||||||||| | ||||||| ||||| |||||||||   |||||||||||||||||||||||||    
T  240850 atagaagtatcttgtagttgtgcttgagcatagggaagtctcttggaagtgtccttgagcaatttgtaatcagttttgattatagtgaaatcccttggaa 240751  T
Q  261 gtgcaaggggactggaatactcct 284  Q
    | ||| ||||| |||| |||||||    
T  240750 g-gcatggggattggactactcct 240728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 162 - 284
Target Start/End: Original strand, 725029 - 725151
Alignment:
Q  162 atagaagtctcttgttgt-gtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaa 260  Q
    |||||||| |||||| || |||||||||||| | |||||||||||| | ||||||| ||||| |||||||||   |||||||||||||||||||||||||    
T  725029 atagaagtatcttgtagttgtgcttgagcatagggaagtctcttggaagtgtccttgagcaatttgtaatcagttttgattatagtgaaatcccttggaa 725128  T
Q  261 gtgcaaggggactggaatactcct 284  Q
    | ||| ||||| |||| |||||||    
T  725129 g-gcatggggattggactactcct 725151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 162 - 284
Target Start/End: Complemental strand, 794205 - 794083
Alignment:
Q  162 atagaagtctcttgttgt-gtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaa 260  Q
    |||||||| |||||| || |||||||||||| | |||||||||||| | ||||||| ||||| |||||||||   |||||||||||||||||||||||||    
T  794205 atagaagtatcttgtagttgtgcttgagcatagggaagtctcttggaagtgtccttgagcaatttgtaatcagttttgattatagtgaaatcccttggaa 794106  T
Q  261 gtgcaaggggactggaatactcct 284  Q
    | ||| ||||| |||| |||||||    
T  794105 g-gcatggggattggactactcct 794083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 21838621 - 21838520
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    |||||| |||| |||| ||||||||||||||||||||||| |||| ||||| |||||||||||||| ||||||| | ||||||||||| |||| |||| |    
T  21838621 gtgcttgagcagataagtctcttggtgaaaccttgagcacatagg-agtctgagtcagttgtgattaagcaagggaaagtcttaagcagttgtgcttatg 21838523  T
Q  101 caa 103  Q
    |||    
T  21838522 caa 21838520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 239 - 309
Target Start/End: Original strand, 23433630 - 23433700
Alignment:
Q  239 attatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaa 309  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||| |||| |||||||||| ||||||    
T  23433630 attatagtgaaatcccttggaagtgcaagggaactggactactcctgtgttgtgggaggaaccactataaa 23433700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 237 - 307
Target Start/End: Complemental strand, 13644726 - 13644656
Alignment:
Q  237 tgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatata 307  Q
    ||||||||||||||||||||| ||||||||| |||||||| ||||||||| |||| |||||||||| ||||    
T  13644726 tgattatagtgaaatcccttgaaagtgcaagcggactggactactcctgtgttgtgggaggaaccagtata 13644656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 237 - 307
Target Start/End: Complemental strand, 13745151 - 13745081
Alignment:
Q  237 tgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatata 307  Q
    ||||||||||||||||||||| ||||||||| |||||||| ||||||||| |||| |||||||||| ||||    
T  13745151 tgattatagtgaaatcccttgaaagtgcaagcggactggactactcctgtgttgtgggaggaaccagtata 13745081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 13644930 - 13644857
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaagg 74  Q
    |||||| | |||| || |||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||    
T  13644930 gtgcttgaacatacaagtctcttggtgaaaccttgtgcacttaggaagtctcaatcagttgtgattgagcaagg 13644857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 13745355 - 13745282
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaagg 74  Q
    |||||| | |||| || |||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||    
T  13745355 gtgcttgaacatacaagtctcttggtgaaaccttgtgcacttaggaagtctcaatcagttgtgattgagcaagg 13745282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 222 - 311
Target Start/End: Original strand, 23586728 - 23586817
Alignment:
Q  222 aattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaatt 311  Q
    |||||||||| ||  ||||||||||||||  |||||||||||||||||||||| | ||||| |  ||||||| |||||||||||||||||    
T  23586728 aattgtaatctagtgtgattatagtgaaaatccttggaagtgcaaggggactgaactactcatagtttgtagaaggaaccaatataaatt 23586817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 5828531 - 5828459
Alignment:
Q  31 ccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaagcaa 103  Q
    ||||||| |||||||| ||||| |||||||||||| |||||||||| | ||||||||| |||| |||||||||    
T  5828531 ccttgagtacctaggaggtctctgtcagttgtgatcgagcaaggtaaaatcttaagcatttgtgcttaagcaa 5828459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 20267853 - 20267937
Alignment:
Q  182 gcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaa 266  Q
    |||||| |||||||||||||||||| | ||||||| || || ||||||||  |  ||| ||||||||||||||||||||||||||    
T  20267853 gcttgaacattgagaagtctcttggaagtgtccttgagtaatttgtaatcttgtgtgactatagtgaaatcccttggaagtgcaa 20267937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 21054482 - 21054566
Alignment:
Q  182 gcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaa 266  Q
    |||||| |||||||||||||||||| | ||||||| || || ||||||||  |  ||| ||||||||||||||||||||||||||    
T  21054482 gcttgaacattgagaagtctcttggaagtgtccttgagtaatttgtaatcttgtgtgactatagtgaaatcccttggaagtgcaa 21054566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 311
Target Start/End: Complemental strand, 28888786 - 28888673
Alignment:
Q  196 aagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtagga 295  Q
    ||||||||||| | ||||||| || ||||| |||||  |  ||||||||||||||||||||| ||||||||| ||| |||| ||||||||  |||||| |    
T  28888786 aagtctcttggaagtgtccttgag-aaattataatcttgtgtgattatagtgaaatcccttg-aagtgcaagaggaatggactactcctggattgtagaa 28888689  T
Q  296 ggaaccaatataaatt 311  Q
    |||||||||| |||||    
T  28888688 ggaaccaataaaaatt 28888673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 18565689 - 18565588
Alignment:
Q  2 tgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaagc 101  Q
    ||||| |||||||||||||||| ||||||  ||||||||||||||||||||    ||||||  ||||||||||   ||||||||||| ||| ||||| ||    
T  18565689 tgcttgagcatataattctctttgtgaaaaattgagcacctaggaagtctcttggagttgtccttgagcaaggggaagtcttaagcagttgctcttatgc 18565590  T
Q  102 aa 103  Q
    ||    
T  18565589 aa 18565588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 25393991 - 25394044
Alignment:
Q  255 ttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataa 308  Q
    ||||||||||| |||||||||| |||||||   |||||||||||||||||||||    
T  25393991 ttggaagtgcacggggactggactactcctacattgtaggaggaaccaatataa 25394044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 282
Target Start/End: Complemental strand, 30213817 - 30213770
Alignment:
Q  237 tgattatagtgaaa--tcccttggaagtgcaaggggactggaatactc 282  Q
    ||||||||||||||  |||||||||||||||||||||||||| |||||    
T  30213817 tgattatagtgaaaaatcccttggaagtgcaaggggactggactactc 30213770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 15998832 - 15998899
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | | ||||||| ||||||||    
T  15998832 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgatttgtagaaggaacca 15998899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 19128412 - 19128345
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| |||| |||| | ||||||||    
T  19128412 tgattatagtgaaatctccttggaagtgcaagggggactggactacttctgtgttgtggaaggaacca 19128345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 19418015 - 19417948
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| ||| ||||| | ||||||||    
T  19418015 tgattatagtgaaatctccttggaagtgcaaaggggactggactacttctgatttgtggaaggaacca 19417948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 19428590 - 19428523
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| ||| ||||| | ||||||||    
T  19428590 tgattatagtgaaatctccttggaagtgcaaaggggactggactacttctgatttgtggaaggaacca 19428523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 20161847 - 20161914
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| ||| ||||| | ||||||||    
T  20161847 tgattatagtgaaatctccttggaagtgcaagggggactggactacttctgatttgtggaaggaacca 20161914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 20267654 - 20267705
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctc 52  Q
    |||||| || |||||| |||||||||||||| ||||||| ||||||||||||    
T  20267654 gtgctttagaatataagtctcttggtgaaactttgagcatctaggaagtctc 20267705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 21054283 - 21054334
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctc 52  Q
    |||||| || |||||| |||||||||||||| ||||||| ||||||||||||    
T  21054283 gtgctttagaatataagtctcttggtgaaactttgagcatctaggaagtctc 21054334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 15538806 - 15538655
Alignment:
Q  8 agcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaagcaatgga 107  Q
    |||||| || |||||||  ||| |||||||||  |||||||||||||| ||||||||||||||| |||| ||||||||||| |||||||||||||| |||    
T  15538806 agcatacaagtctcttgacgaagccttgagcaagtaggaagtctcagttagttgtgattgagcagggtaaagtcttaagcagttgttcttaagcaaggga 15538707  T
Q  108 agtctcttgcagaggtgcttgagcaaaagaagtccttagatagagtcctata 159  Q
    ||||||||||| |||||||||||||||||||||| |||| ||| | ||||||    
T  15538706 agtctcttgcataggtgcttgagcaaaagaagtctttaggtagggacctata 15538655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 13178311 - 13178594
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    |||||| ||||||||| ||||||||| |||||||||| ||| ||  |||||     |||||| ||||||||||| | ||||||||||| |||  ||||||    
T  13178311 gtgcttgagcatataagtctcttggtaaaaccttgagtacccagagagtctattggagttgtcattgagcaagggaaagtcttaagcagttgcgcttaag 13178410  T
Q  101 caa-tggaagtctcttgcagaggtgcttgagcaaaagaagtccttagatagagtcctatatcatagaagtctcttgttgt-gtgcttgagcattgagaag 198  Q
    ||| || |||||||||| ||   | ||||||||   |||||  |||| |||||||||| | |||| ||||||||||  || ||||||||| |  ||||||    
T  13178411 caaatgtaagtctcttggagttatccttgagcag--gaagtttttaggtagagtcctagagcatataagtctcttgcagttgtgcttgagaaaagagaag 13178508  T
Q  199 tctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcct 284  Q
    |||||||| | ||||||| ||| |||||||||| | | || |||| |||||||| |||| |||||||||||||||||| |||||||    
T  13178509 tctcttggtagtgtccttaagctaattgtaatccatagtggttattgtgaaatctcttgcaagtgcaaggggactggactactcct 13178594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 179 - 320
Target Start/End: Original strand, 8711839 - 8711981
Alignment:
Q  179 tgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaat 278  Q
    ||||||||||||| | |||||||||| | | ||||||| ||||| |||||||||    |||||||| | |||||||||||||| |||||||||||||| |    
T  8711839 tgtgcttgagcatagggaagtctcttagaagtgtccttgagcaatttgtaatcatatgtgattataattaaatcccttggaagcgcaaggggactggact 8711938  T
Q  279 actcctgttttgtaggaggaaccaatat-aaattgttgtgtct 320  Q
    |||||||  ||||||||||||||  ||| ||||||||||||||    
T  8711939 actcctgcattgtaggaggaaccggtataaaattgttgtgtct 8711981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 179 - 320
Target Start/End: Original strand, 9063726 - 9063868
Alignment:
Q  179 tgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaat 278  Q
    ||||||||||||| | |||||||||| | | ||||||| ||||| |||||||||    |||||||| | |||||||||||||| |||||||||||||| |    
T  9063726 tgtgcttgagcatagggaagtctcttagaagtgtccttgagcaatttgtaatcatatgtgattataattaaatcccttggaagcgcaaggggactggact 9063825  T
Q  279 actcctgttttgtaggaggaaccaatat-aaattgttgtgtct 320  Q
    |||||||  ||||||||||||||  ||| ||||||||||||||    
T  9063826 actcctgcattgtaggaggaaccggtataaaattgttgtgtct 9063868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 176 - 313
Target Start/End: Original strand, 14427628 - 14427764
Alignment:
Q  176 ttgtgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactgg 275  Q
    |||||||||||||||||  |||||||||||| | ||||||| ||||| |||||||   |  ||||| |||||||||||||||||||  ||||||||||||    
T  14427628 ttgtgtgcttgagcatttcgaagtctcttggaagtgtccttgagcaa-ttgtaatattgtatgattctagtgaaatcccttggaagctcaaggggactgg 14427726  T
Q  276 aatactcctgttttgtaggaggaaccaatataaattgt 313  Q
    | ||||| || |||||||||||||||| ||||| ||||    
T  14427727 actactcatggtttgtaggaggaaccagtataagttgt 14427764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 176 - 302
Target Start/End: Complemental strand, 17118647 - 17118522
Alignment:
Q  176 ttgtgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactgg 275  Q
    |||||||||||||||||  |||||||||||  ||||||||| ||||| |||||||| ||   |||||||||| |||| |||| ||||| |||||||| ||    
T  17118647 ttgtgtgcttgagcatttggaagtctcttgaaaatgtccttgagcaa-ttgtaatctagtgagattatagtggaatctcttgaaagtgtaaggggacggg 17118549  T
Q  276 aatactcctgttttgtaggaggaacca 302  Q
    | |||||||| ||||||||||||||||    
T  17118548 actactcctggtttgtaggaggaacca 17118522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 240 - 309
Target Start/End: Original strand, 16201847 - 16201916
Alignment:
Q  240 ttatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaa 309  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||| ||||||    
T  16201847 ttatagtgaaatcccttggaagtgcaaggggactggattactcctgtgttgtaggatgaaccagtataaa 16201916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 11829969 - 11830072
Alignment:
Q  13 ataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaagc-aatggaagtc 111  Q
    |||| ||||||||||||||||||| ||||||||| |||||||| ||||||||||||| |||| | ||||||||||| |||| ||||||| || |||||||    
T  11829969 ataagtctcttggtgaaaccttgaacacctagga-gtctcagttagttgtgattgagtaagggaaagtcttaagcagttgtgcttaagcaaagggaagtc 11830067  T
Q  112 tcttg 116  Q
    |||||    
T  11830068 tcttg 11830072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 311
Target Start/End: Complemental strand, 11073896 - 11073823
Alignment:
Q  238 gattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaatt 311  Q
    ||||||||||||||| ||| ||||||||||||||||||| ||||||||  |||| |||||||||||||||||||    
T  11073896 gattatagtgaaatctcttagaagtgcaaggggactggactactcctgcgttgttggaggaaccaatataaatt 11073823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 10878423 - 10878509
Alignment:
Q  183 cttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggg 269  Q
    ||||||||||||||||||| |||| |  |||||| | ||| |||||||| ||| |||||||||||||||| ||||||||||||||||    
T  10878423 cttgagcattgagaagtcttttggaagagtccttgaacaatttgtaatccagagtgattatagtgaaatcgcttggaagtgcaaggg 10878509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 320
Target Start/End: Original strand, 27486593 - 27486674
Alignment:
Q  239 attatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaattg-ttgtgtct 320  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||||| | |||| |||||||||||||||||||| ||||||||    
T  27486593 attatagt-aaatctcttggaagtgcaaggggactggactactcctttattgtgggaggaaccaatataaattgcttgtgtct 27486674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 162 - 328
Target Start/End: Complemental strand, 15526501 - 15526337
Alignment:
Q  162 atagaagtctcttgttgtgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaag 261  Q
    ||||| || |||||||||||||||||||||||||||| ||||| ||  ||||||| |||||| ||| |||||| ||  ||| |||||||||| ||||| |    
T  15526501 atagacgtttcttgttgtgtgcttgagcattgagaagactctt-ggtgtgtccttgagcaaactgt-atcaagttttgttaaagtgaaatcctttggagg 15526404  T
Q  262 tgcaaggggactggaatactcctgttttgtaggaggaaccaatataaattg--ttgtgtctttcatctc 328  Q
    | || ||| | |||| | ||| || ||||||||||||||| ||||||||||  ||||||||||| ||||    
T  15526403 tacaggggtattggactgctcatg-tttgtaggaggaacc-atataaattgttttgtgtctttcttctc 15526337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 240 - 309
Target Start/End: Original strand, 20736632 - 20736701
Alignment:
Q  240 ttatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaa 309  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| || | |||||| ||||||||||    
T  20736632 ttatagtgaaatcccttgaaagtgcaaggggactggactactcatgtgttatgggaggagccaatataaa 20736701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 312
Target Start/End: Complemental strand, 26820719 - 26820584
Alignment:
Q  176 ttgtgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactgg 275  Q
    |||||| | ||||||||  |||||||||||| |||||||| |||||| || |||||     |||||||||||||||  ||||||||||||| |||| |||    
T  26820719 ttgtgtacgtgagcatttggaagtctcttggaaatgtcctctagcaa-ttataatcttatgtgattatagtgaaatttcttggaagtgcaaagggaatgg 26820621  T
Q  276 aatactcctgttttgtaggaggaaccaatataaattg 312  Q
    | |||||||   || ||||||||||| ||||||||||    
T  26820620 actactcctagattataggaggaaccgatataaattg 26820584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 305
Target Start/End: Original strand, 20747256 - 20747380
Alignment:
Q  178 gtgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagatt-gattatagtgaaatcccttggaagtgcaaggggactgga 276  Q
    ||||||||||||||||||||||||||| | |  |||||| ||||  |||||||   | || | |||||||||||||||||| ||||||||||||||||||    
T  20747256 gtgtgcttgagcattgagaagtctcttagaagagtccttgagcat-ttgtaat---gtttaggttatagtgaaatcccttgaaagtgcaaggggactgga 20747351  T
Q  277 atactcctgttttgtaggaggaaccaata 305  Q
     ||||  ||| || | |||||||||||||    
T  20747352 ctacttttgtgttatgggaggaaccaata 20747380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 309
Target Start/End: Complemental strand, 10917779 - 10917654
Alignment:
Q  181 tgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatac 280  Q
    ||||||||||||||||||| |||||| |  |||||| ||| | ||||||| | |   ||||||| |||||||||||||||| |||| ||||||||| |||    
T  10917779 tgcttgagcattgagaagtttcttggaagagtccttaagcca-ttgtaat-atgtgagattataatgaaatcccttggaagagcaa-gggactggactac 10917683  T
Q  281 tcctgttttgtaggaggaaccaatataaa 309  Q
    |||||| |||| |||||||| | ||||||    
T  10917682 tcctgtgttgtgggaggaactagtataaa 10917654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 5628602 - 5628668
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaaggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||||||||||||| |||| | || |||| | ||||||||    
T  5628602 tgattatagtgaaatctccttggaagtgcaaggggactggactacttccgtgttgtggaaggaacca 5628668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 273
Target Start/End: Complemental strand, 13363038 - 13362947
Alignment:
Q  179 tgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggact 273  Q
    ||||||||||||||| ||||||||||||   ||||||| ||||  ||||||||  | |||| |||| ||||||||||||||||||||||||||||    
T  13363038 tgtgcttgagcattg-gaagtctcttggctttgtccttgagcat-ttgtaatcttgtttgactata-tgaaatcccttggaagtgcaaggggact 13362947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 933279 - 933212
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | ||||||| | ||||||||    
T  933279 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgtggaaggaacca 933212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 1795066 - 1795133
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | ||||||| | ||||||||    
T  1795066 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgtggaaggaacca 1795133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 7805101 - 7805168
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | ||||||| | ||||||||    
T  7805101 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgtggaaggaacca 7805168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 13076545 - 13076478
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | ||||||| | ||||||||    
T  13076545 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgtggaaggaacca 13076478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 276
Target Start/End: Original strand, 17389323 - 17389362
Alignment:
Q  237 tgattatagtgaaatcccttggaagtgcaaggggactgga 276  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  17389323 tgattatagtgaaatccattggaagtgcaagtggactgga 17389362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 17910588 - 17910655
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | ||||||| | ||||||||    
T  17910588 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgtggaaggaacca 17910655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 322
Target Start/End: Original strand, 24384103 - 24384190
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaaccaatataaattgttgtgtcttt 322  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | || |||| | ||||||||| |||| |  ||||||||||    
T  24384103 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgtgttgtggaaggaaccaagataactgcttgtgtcttt 24384190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 321
Target Start/End: Complemental strand, 4433413 - 4433327
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaaccaatataaattgttgtgtctt 321  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | | ||||| | ||||||||| |||| |  |||||||||    
T  4433413 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgatttgtggaaggaaccaagataactgcttgtgtctt 4433327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 321
Target Start/End: Original strand, 19887936 - 19888022
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaaccaatataaattgttgtgtctt 321  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | | ||||| | ||||||||| |||| |  |||||||||    
T  19887936 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgatttgtggaaggaaccaagataactgcttgtgtctt 19888022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 21528521 - 21528563
Alignment:
Q  10 catataattctcttggtgaaaccttgagcacctaggaagtctc 52  Q
    ||||||| ||||||||||||||||||||||  |||||||||||    
T  21528521 catataagtctcttggtgaaaccttgagcatttaggaagtctc 21528563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8711630 - 8711675
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctagga 46  Q
    |||||| ||||||||| |||||||||||||| |||||||| |||||    
T  8711630 gtgcttgagcatataagtctcttggtgaaacattgagcacttagga 8711675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9063517 - 9063562
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctagga 46  Q
    |||||| ||||||||| |||||||||||||| |||||||| |||||    
T  9063517 gtgcttgagcatataagtctcttggtgaaacattgagcacttagga 9063562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 312
Target Start/End: Original strand, 4769518 - 4769566
Alignment:
Q  264 caaggggactggaatactcctgttttgtaggaggaaccaatataaattg 312  Q
    |||||| |||||| |||||||||||||| |||||||| | |||||||||    
T  4769518 caagggtactggactactcctgttttgtgggaggaacaagtataaattg 4769566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 17435907 - 17435717
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    |||||| ||||||||| |||| | |||||||||||||||||| |||||||||||| ||||||||||||||| |||| ||||||||||| |||| ||||||    
T  17435907 gtgcttgagcatataagtctccttgtgaaaccttgagcaccttggaagtctcagttagttgtgattgagcatggtaaagtcttaagcagttgtgcttaag 17435808  T
Q  101 caatggaagtctcttgca-gaggtgcttgagcaaaagaagtccttagata--gagtcctatatcatagaagtctcttgttgtgtgcttgag 188  Q
    ||| | |||||||||| | | ||||||| ||||||||||||| |||| ||    |||||| | |||||||||||||| |||||| ||||||    
T  17435807 caaggtaagtctcttgtagggggtgctttagcaaaagaagtctttaggtaatttgtcctagagcatagaagtctcttattgtgtccttgag 17435717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 210 - 328
Target Start/End: Complemental strand, 17435726 - 17435606
Alignment:
Q  210 tgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaa 309  Q
    ||||||| || |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||| ||||||    
T  17435726 tgtccttgagaaaattgtattcaagattgattatagtgaaatcccttggaagtgcaaagggactggagtactcttgttttgtaggaggaaccagtataaa 17435627  T
Q  310 ttg--ttgtgtctttcatctc 328  Q
    |||  |||| |||||||||||    
T  17435626 ttgttttgtatctttcatctc 17435606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 10 - 273
Target Start/End: Original strand, 16197923 - 16198181
Alignment:
Q  10 catataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaagcaatggaag 109  Q
    ||||||| |||||||||||||| |||||||| || ||| |||||||||||||||||||| || |||| | ||||||| | |||| || ||| || | |||    
T  16197923 catataagtctcttggtgaaacattgagcacgtatgaattctcagtcagttgtgattgaacagggtaaattcttaagtagttgtgct-aaggaaggtaag 16198021  T
Q  110 tctcttgcagaggtgcttgagcaaaagaagtccttagatagagtcctatatcatagaagtctcttgttgtgtgcttgagcattgagaagtctcttgggaa 209  Q
    |||||||  | | |||||||||||| |||||| |||| ||  |||||| |  |||||||||  ||||||| || ||||||||| ||||||||||| || |    
T  16198022 tctcttgttgtg-tgcttgagcaaa-gaagtctttaggtattgtcctagagaatagaagtcctttgttgtctgattgagcattaagaagtctctt-ggta 16198118  T
Q  210 tgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggact 273  Q
    ||| ||| |||||||||||||||| | ||||||||||||||  ||||| |||||||||||||||    
T  16198119 tgtacttgagcaaattgtaatcaa-agtgattatagtgaaaatccttgaaagtgcaaggggact 16198181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 21823275 - 21822965
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    |||||| | ||||||| ||||||| ||||||||| ||| | |||||||||||    ||||||  ||||| |||| | ||||||||| | ||||  |||||    
T  21823275 gtgcttgaccatataagtctcttgatgaaacctttagcgcttaggaagtctcttggagttgtccttgagtaaggaaaagtcttaagtagttgtgtttaag 21823176  T
Q  101 caatgg-aagtctcttgcagaggtgcttgagcaaaagaagtccttagatagagtcctatatcatagaagtctcttgttg-tgtgcttgagcattgagaag 198  Q
    ||| || || ||||||| ||  || ||| ||   |||||||| |||||||| |||||| |  |||||||| |||||  | ||||||||||||   |||||    
T  21823175 caaagggaactctcttggagttgtccttcag---aagaagtctttagatagtgtcctagagtatagaagtttcttgcagctgtgcttgagcaaaaagaag 21823079  T
Q  199 tctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggagga 298  Q
    |  |||||   ||||||| |||||  ||||||| ||| |||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| ||||||    
T  21823078 ttgcttggttgtgtccttgagcaagctgtaatcgagagtgattatagtgaaatcccttggaagtgcaatgggactggactactcctgtgttgtgggagga 21822979  T
Q  299 accaatataaattg 312  Q
    ||| ||||||||||    
T  21822978 accgatataaattg 21822965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 222 - 309
Target Start/End: Original strand, 17418205 - 17418292
Alignment:
Q  222 aattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaa 309  Q
    |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||| ||||||||| |||| |||||||||||||||||    
T  17418205 aattgtaatcaagagtgattatagtgaaattccttggaagcgcaaggggactggactactcctgtgttgtgggaggaaccaatataaa 17418292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 165 - 313
Target Start/End: Original strand, 27766095 - 27766243
Alignment:
Q  165 gaagtctcttg-ttgtgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtg 263  Q
    ||||||||||| ||| | |||||||||||  ||||||| |||  | ||||||| ||||| |||||||| ||  ||||||||||||||| |||||||||||    
T  27766095 gaagtctcttgcttgagggcttgagcatttggaagtcttttgaaattgtccttgagcaa-ttgtaatctagtgtgattatagtgaaattccttggaagtg 27766193  T
Q  264 caaggggactggaatactcctgttttgtaggaggaaccaatataaattgt 313  Q
     |||||||||||| |||| ||| |||||||||||||| | ||||||||||    
T  27766194 taaggggactggactacttctggtttgtaggaggaacaagtataaattgt 27766243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 8685060 - 8684988
Alignment:
Q  237 tgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaa 309  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||| ||||||    
T  8685060 tgattatagtgaaatcccttggaagtgcaaggggactggactactcctgtgttgtgggaggaaccactataaa 8684988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 178 - 312
Target Start/End: Original strand, 21770236 - 21770369
Alignment:
Q  178 gtgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaa 277  Q
    ||||||||||| |||  |||||||||||| |  |||||| ||||| |||||||| ||   ||||||||||||||| ||| |||||||||||||||||||     
T  21770236 gtgtgcttgagtatttggaagtctcttggaagagtccttgagcaa-ttgtaatctagtaagattatagtgaaatctcttagaagtgcaaggggactggat 21770334  T
Q  278 tactcctgttttgtaggaggaaccaatataaattg 312  Q
    ||||||  | |||| ||||||||||||||||||||    
T  21770335 tactcccatgttgtgggaggaaccaatataaattg 21770369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 195 - 309
Target Start/End: Original strand, 26655295 - 26655409
Alignment:
Q  195 gaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtagg 294  Q
    |||||||||||| |  ||||||   ||| ||||||||| |  ||||||||||||||||||||| ||||||||||||||||||  |||||||| |||| ||    
T  26655295 gaagtctcttggaagggtccttggacaatttgtaatcatgtgtgattatagtgaaatcccttgaaagtgcaaggggactggaccactcctgtgttgtggg 26655394  T
Q  295 aggaaccaatataaa 309  Q
    |||||||| ||||||    
T  26655395 aggaaccagtataaa 26655409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 22132691 - 22132764
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaagg 74  Q
    |||||| ||||||||| ||||||||||||||||||||||  |||||||||||| |||||| |||||||| ||||    
T  22132691 gtgcttgagcatataagtctcttggtgaaaccttgagcatttaggaagtctcaatcagttttgattgagaaagg 22132764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 311
Target Start/End: Complemental strand, 19564083 - 19563953
Alignment:
Q  180 gtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaata 279  Q
    |||||| ||||||  |||||||||||| |  |||||| || || |||||||||  | |||||||| |||| ||||||||||||||||||||| ||||  |    
T  19564083 gtgcttaagcattaggaagtctcttggaagagtccttcagtaa-ttgtaatcagtagtgattataatgaattcccttggaagtgcaaggggattggacca 19563985  T
Q  280 ctcctgttttgtaggaggaaccaatataaatt 311  Q
    ||| ||| |||| |||||||||| ||||||||    
T  19563984 ctcatgtgttgtgggaggaaccagtataaatt 19563953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 24110030 - 24110097
Alignment:
Q  241 tatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataa 308  Q
    |||| |||||||||| |||||||||||||||||||| ||||| || ||||| ||||||||||||||||    
T  24110030 tataatgaaatccctaggaagtgcaaggggactggactactcttggtttgtgggaggaaccaatataa 24110097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 269
Target Start/End: Original strand, 26653978 - 26654067
Alignment:
Q  179 tgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggg 269  Q
    ||||||||||||  |||||||||||||| | ||||||| | ||| |||||||| | | |||||||||||||||| ||||||||||||||||    
T  26653978 tgtgcttgagcaa-gagaagtctcttggaagtgtccttgaccaatttgtaatccaaagtgattatagtgaaatcacttggaagtgcaaggg 26654067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 16152745 - 16152826
Alignment:
Q  36 agcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaagcaatgg-aagtctcttg 116  Q
    ||||||||||||||||| ||||||||||||||||||||| | ||||||||| | |||| |||| |||| || ||||||||||    
T  16152745 agcacctaggaagtctccgtcagttgtgattgagcaagggaaagtcttaagaagttgtgcttaggcaaaggaaagtctcttg 16152826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 21824135 - 21823820
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    |||||| |||||| || || |||||||||||||||||||| || ||||||||    ||||||  ||||| |||| | ||||||||||| |||| |||||     
T  21824135 gtgctttagcatagaagtcccttggtgaaaccttgagcacttatgaagtctcttggagttgtccttgagtaaggaaaagtcttaagcagttgtccttaac 21824036  T
Q  101 caatgg-aagtctcttgcagaggtgcttgagcaaaagaagtccttagatagagtcctatatcatagaagtctcttgttgt-gtgcttgagcattgagaa- 197  Q
    ||| || || ||||||| ||  || ||| ||     |||||| |||| ||| |||||| | |||||||||||||||  || |||||||||||   | ||     
T  21824035 caaagggaactctcttggagttgtccttcagtt---gaagtctttaggtagtgtcctagagcatagaagtctcttgcagttgtgcttgagcaaaaaaaaa 21823939  T
Q  198 -gtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatc-ccttggaagtgcaaggggactggaatactcctgttttgtagga 295  Q
     |||||||||   ||||||| ||| | |||||||| ||| |||||||||||||||| | ||| ||||  ||||||| |||| ||||||||| |||| |||    
T  21823938 agtctcttggttgtgtccttgagcgagttgtaatccagagtgattatagtgaaatctctttgaaagtataaggggattggactactcctgtgttgtggga 21823839  T
Q  296 ggaaccaatataaattgtt 314  Q
    |||||   |||||||||||    
T  21823838 ggaacatgtataaattgtt 21823820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 184 - 312
Target Start/End: Original strand, 22312413 - 22312540
Alignment:
Q  184 ttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcc 283  Q
    |||| ||||| |||||||||||| |   ||||| || ||||||||||||  || ||||||| |||||||||||| ||||||||||||| |||| |||||     
T  22312413 ttgatcattgggaagtctcttggaagattccttgag-aaattgtaatcagtatggattatattgaaatcccttgaaagtgcaaggggattggactactca 22312511  T
Q  284 tgttttgtaggaggaaccaatataaattg 312  Q
    ||| |||| | |||||||  |||||||||    
T  22312512 tgtgttgtggaaggaaccggtataaattg 22312540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 248 - 308
Target Start/End: Complemental strand, 23958983 - 23958923
Alignment:
Q  248 aaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataa 308  Q
    ||||| ||||||||||||||||||||||| ||||||||  ||||| |||||||||||||||    
T  23958983 aaatctcttggaagtgcaaggggactggactactcctggattgtaagaggaaccaatataa 23958923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 24216494 - 24216559
Alignment:
Q  8 agcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaag 73  Q
    |||| |||| ||||||||| |||||||||||| |||||||||||   |||||||||||||||||||    
T  24216494 agcaaataagtctcttggtaaaaccttgagcaactaggaagtctggatcagttgtgattgagcaag 24216559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 309
Target Start/End: Original strand, 16152944 - 16153043
Alignment:
Q  210 tgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaa 309  Q
    ||||||| ||||| |||||||  ||| ||||||||||| |||||||| |||||| ||||||| |||| ||||||| | |||| | |||||| | ||||||    
T  16152944 tgtccttgagcaatttgtaattcagagtgattatagtgtaatccctttgaagtgaaaggggattggactactcctctgttgtggaaggaactagtataaa 16153043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 26655134 - 26655207
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaagg 74  Q
    |||||| ||||||||| ||||||||||||||| ||||||  ||| |||||||| ||| |||| ||| |||||||    
T  26655134 gtgcttgagcatataagtctcttggtgaaaccatgagcatttagaaagtctcaatcatttgtaattaagcaagg 26655207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 281
Target Start/End: Original strand, 14794452 - 14794496
Alignment:
Q  238 gattatagtgaaatc-ccttggaagtgcaaggggactggaatact 281  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||    
T  14794452 gattatagtgaaatctccttggaagtgcaaggggactggactact 14794496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 303
Target Start/End: Original strand, 16587640 - 16587700
Alignment:
Q  243 tagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaa 303  Q
    ||||||||| ||||| ||||| |||||||||||| ||||| || |||||||||| ||||||    
T  16587640 tagtgaaattccttgaaagtgtaaggggactggactactcatgatttgtaggagaaaccaa 16587700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 312
Target Start/End: Original strand, 21548982 - 21549057
Alignment:
Q  237 tgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaattg 312  Q
    |||||||||||||||||||| |||||| ||||||  |||| ||||||||| | || |||  ||||| |||||||||    
T  21548982 tgattatagtgaaatcccttagaagtgtaagggggttggactactcctgtgtcgtgggataaaccagtataaattg 21549057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 24428187 - 24428254
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | ||||||| | ||||||||    
T  24428187 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgtggaaggaacca 24428254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 26653806 - 26653861
Alignment:
Q  3 gcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcag 58  Q
    |||| ||||||||| |||||||||||||||||||| || ||| |||||||| ||||    
T  26653806 gcttgagcatataagtctcttggtgaaaccttgagtacttagaaagtctcaatcag 26653861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 26866699 - 26866632
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | ||||||| | ||||||||    
T  26866699 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgtggaaggaacca 26866632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 26879288 - 26879221
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | ||||||| | ||||||||    
T  26879288 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgtggaaggaacca 26879221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 16934067 - 16934191
Alignment:
Q  176 ttgtgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaa-tcccttggaagtgcaaggggactg 274  Q
    |||||||||||||||| | ||||||||||||   ||||||| ||||  |||||||||  | |||||||||||||| || ||| ||||||||||||| ||     
T  16934067 ttgtgtgcttgagcatag-gaagtctcttggttgtgtccttgagcat-ttgtaatcattagtgattatagtgaaaatcactttgaagtgcaagggggctt 16934164  T
Q  275 gaatactcctgttttgtaggaggaacc 301  Q
    || ||||| ||  ||||||||| ||||    
T  16934165 gactactcttggattgtaggagaaacc 16934191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 19564279 - 19564223
Alignment:
Q  13 ataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagca 71  Q
    |||| ||||||||||||| ||||||||| ||| |||||||| |||||||||||||||||    
T  19564279 ataagtctcttggtgaaatcttgagcac-tag-aagtctcaatcagttgtgattgagca 19564223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 19878574 - 19878644
Alignment:
Q  239 attatagtgaaa-tcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataa 308  Q
    |||||||||||| |||||| ||| | ||||||||||||| ||||||||  |||||| |||||||| |||||    
T  19878574 attatagtgaaaatccctttgaaattcaaggggactggactactcctggattgtagaaggaaccattataa 19878644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 308
Target Start/End: Complemental strand, 26704109 - 26704041
Alignment:
Q  240 ttatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataa 308  Q
    |||||||||||||||||| |||| |||||||||| || |||||  | ||||| | |||||| |||||||    
T  26704109 ttatagtgaaatcccttgaaagtacaaggggactagactactctagatttgtggaaggaacaaatataa 26704041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 291
Target Start/End: Original strand, 38586690 - 38586746
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgt 291  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | |||||||    
T  38586690 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgt 38586746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 10638 - 10744
Alignment:
Q  13 ataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaagcaatggaagtct 112  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| ||| ||||||| |||| ||||||||| ||||||||    
T  10638 ataagtctcttggtgaaacctttagcacctaggaagtctcagtcagttgtgattgaggagggtaaagttttaagcagttgtacttaagcaagggaagtct 10737  T
Q  113 cttgcag 119  Q
    |||||||    
T  10738 cttgcag 10744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 152 - 298
Target Start/End: Original strand, 10759 - 10904
Alignment:
Q  152 gtcctatatcatagaagtctcttgttgtgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaat 251  Q
    |||||| | |||| |||| | ||||||||||| ||||||||||||||||||||||   | ||||| | |||||||||||||||||||||||||||||||     
T  10759 gtcctagagcataaaagtttattgttgtgtgcatgagcattgagaagtctcttggtgtt-tccttgaacaaattgtaatcaagattgattatagtgaaaa 10857  T
Q  252 cccttggaagtgcaaggggactggaatactcctgttttgtaggagga 298  Q
    ||||  ||||||||||||||||||| ||||||| |||| ||||||||    
T  10858 ccctgtgaagtgcaaggggactggactactcctattttataggagga 10904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 179 - 309
Target Start/End: Complemental strand, 25239 - 25109
Alignment:
Q  179 tgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaat 278  Q
    |||||||||||||| |||||||| |||| |  |||||| ||||| |||||||| | | |||||||||||||| |||||||||||||||||||| |||| |    
T  25239 tgtgcttgagcattaagaagtctattggaagagtccttgagcaatttgtaatccaaagtgattatagtgaaaccccttggaagtgcaaggggattggact 25140  T
Q  279 actcctgttttgtaggaggaaccaatataaa 309  Q
    |||||| | |||| |||||||||||||||||    
T  25139 actcctttattgtgggaggaaccaatataaa 25109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 128677 - 128394
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    |||||| ||||||||| ||||||||| |||||||||| ||| ||  |||||     |||||| ||||||||||| | ||||||||||| |||  ||||||    
T  128677 gtgcttgagcatataagtctcttggtaaaaccttgagtacccagagagtctattggagttgtcattgagcaagggaaagtcttaagcagttgcgcttaag 128578  T
Q  101 caa-tggaagtctcttgcagaggtgcttgagcaaaagaagtccttagatagagtcctatatcatagaagtctcttgttgt-gtgcttgagcattgagaag 198  Q
    ||| || |||||||||| ||   | ||||||||   |||||  |||| |||||||||| | |||| ||||||||||  || ||||||||| |  ||||||    
T  128577 caaatgtaagtctcttggagttatccttgagcag--gaagtttttaggtagagtcctagagcatataagtctcttgcagttgtgcttgagaaaagagaag 128480  T
Q  199 tctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcct 284  Q
    |||||||| | ||||||| ||| |||||||||| | | || |||| |||||||| |||| |||||||||||||||||| |||||||    
T  128479 tctcttggtagtgtccttaagctaattgtaatccatagtggttattgtgaaatctcttgcaagtgcaaggggactggactactcct 128394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 100252 - 100185
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | ||||||| | ||||||||    
T  100252 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgtggaaggaacca 100185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 9756988 - 9757121
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    |||||| | ||||||| |||||||| ||| |||| ||||||||| |||||||||||| |||||||| |||| |||| ||||||||| | |||| ||||||    
T  9756988 gtgcttgaccatataagtctcttggcgaagcctttagcacctagaaagtctcagtcacttgtgattaagcagggtaaagtcttaagtagttgtgcttaag 9757087  T
Q  101 caatggaagtctcttgcagaggtgcttgagcaaa 134  Q
    ||| |||||||||||||||  |||||||||||||    
T  9757088 caagggaagtctcttgcagttgtgcttgagcaaa 9757121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 179 - 309
Target Start/End: Original strand, 12439859 - 12439989
Alignment:
Q  179 tgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaat 278  Q
    |||||||||||||||||||||||||||  | ||| ||| ||||  |||||||| | | ||||||||||||||||||||||||||||||| ||| |||| |    
T  12439859 tgtgcttgagcattgagaagtctcttgaaagtgtgcttgagcattttgtaatccatagtgattatagtgaaatcccttggaagtgcaagaggattggagt 12439958  T
Q  279 actcctgttttgtaggaggaaccaatataaa 309  Q
    |||||||  |||| |||||||| | ||||||    
T  12439959 actcctgaattgtgggaggaactagtataaa 12439989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 313
Target Start/End: Original strand, 19019785 - 19019918
Alignment:
Q  178 gtgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaa 277  Q
    ||||||||||||| || |||||||||||| |  |||||| ||||| | |||||| ||   |||||||||||||| ||||  ||||||||||||||||||     
T  19019785 gtgtgcttgagcagtg-gaagtctcttggaagagtccttgagcaa-tggtaatctagtgagattatagtgaaattccttaaaagtgcaaggggactggac 19019882  T
Q  278 tactcctgttttgtaggaggaaccaatataaattgt 313  Q
    ||||| ||| |||| |||||||||| ||||||||||    
T  19019883 tactcatgtattgtgggaggaaccagtataaattgt 19019918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 24006696 - 24006761
Alignment:
Q  7 aagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaa 72  Q
    ||||||| || |||||||||||||||||||| ||||||||||||| | ||||||||||||||||||    
T  24006696 aagcatacaagtctcttggtgaaaccttgagaacctaggaagtctaaatcagttgtgattgagcaa 24006761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 311
Target Start/End: Original strand, 12669814 - 12669886
Alignment:
Q  239 attatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaatt 311  Q
    ||||||||||||| |||||||||||||||||||||||| ||||  ||| |||| |||||||||| ||||||||    
T  12669814 attatagtgaaattccttggaagtgcaaggggactggactactattgtgttgtgggaggaaccagtataaatt 12669886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 24285809 - 24285863
Alignment:
Q  18 tctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaa 72  Q
    ||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||    
T  24285809 tctcttggtcaaactttgagcaactaggaagtctcagtcagttgtgattgagcaa 24285863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 312
Target Start/End: Original strand, 9757155 - 9757242
Alignment:
Q  225 tgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaaccaatataaattg 312  Q
    ||||||||||| |||||| ||||||| |  |||||||| ||||||||||||| ||||| ||| |||| |||||||||| | |||||||    
T  9757155 tgtaatcaagagtgattaaagtgaaagctattggaagttcaaggggactggactactcatgtgttgtgggaggaaccagtgtaaattg 9757242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 282
Target Start/End: Complemental strand, 12397273 - 12397234
Alignment:
Q  243 tagtgaaatcccttggaagtgcaaggggactggaatactc 282  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  12397273 tagtgaaatcccttggaagtgcaaggggactggactactc 12397234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 7677425 - 7677356
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaaccaat 304  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | ||||||| | ||||||||||    
T  7677425 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgtggaaggaaccaat 7677356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 5973339 - 5973272
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | ||||||| | ||||||||    
T  5973339 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgtggaaggaacca 5973272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 22637975 - 22637905
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagca 71  Q
    |||||| ||||||||| | ||| ||||||||||||||||  ||| |||||||| |||||| ||||| ||||    
T  22637975 gtgcttgagcatataagtgtctcggtgaaaccttgagcatttagtaagtctcaatcagttttgatttagca 22637905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 24285977 - 24286042
Alignment:
Q  218 agcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcc 283  Q
    ||||| || ||||| ||| |||||| ||| |||||| ||||||||| |||||||||||| ||||||    
T  24285977 agcaatttttaatccagagtgattacagtaaaatcctttggaagtgtaaggggactggactactcc 24286042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 2067 - 2372
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgttcttaag 100  Q
    |||||| ||||||||| ||||||||||| |||||||||| ||||||||||||| |||| | ||||||| ||||| ||  |||| || | || | ||  ||    
T  2067 gtgcttgagcatataagtctcttggtgacaccttgagcaactaggaagtctcaatcagctatgattgatcaaggaag--tctttaggagttttcctagag 2164  T
Q  101 caat-ggaagtctcttgcagaggtgcttgagcaaaagaagtccttagatagagtcctatatcatagaagtctcttgttgt-gtgcttgagcattgagaag 198  Q
    |||  |||||||||||| |    | |||||||||  |||||| |||| ||| |||||| |||| |||||||| |||  || ||||||||  ||| | |||    
T  2165 caaacggaagtctcttggaattttccttgagcaa--gaagtctttaggtagtgtcctagatca-agaagtcttttgcagttgtgcttgacaattaataag 2261  T
Q  199 tctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaatactcctgttttgtaggagga 298  Q
    |||||||| |  |||||| ||||| |||||||| ||| ||||||||||||||||  ||||||||||||||||||| || ||||| | | || | ||||||    
T  2262 tctcttggaagagtccttgagcaatttgtaatccagagtgattatagtgaaatcttttggaagtgcaaggggactagactactcatatgttctgggagga 2361  T
Q  299 accaatataaa 309  Q
    |||| ||||||    
T  2362 accagtataaa 2372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 179 - 309
Target Start/End: Original strand, 18076 - 18206
Alignment:
Q  179 tgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaat 278  Q
    ||||||||||||| ||||||| |||||| |  |||||| ||||| || ||||| ||| |||||||||||||| | ||||||||| ||||| |||| || |    
T  18076 tgtgcttgagcatagagaagtatcttggaagagtccttgagcaatttttaatccagagtgattatagtgaaacctcttggaagtacaaggagactcgact 18175  T
Q  279 actcctgttttgtaggaggaaccaatataaa 309  Q
    |||||| | ||||||||||||||||||||||    
T  18176 actcctttgttgtaggaggaaccaatataaa 18206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 179 - 309
Target Start/End: Original strand, 30606 - 30736
Alignment:
Q  179 tgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaat 278  Q
    |||||||||||||||||||||||  | | |  |||||| ||||| |||||||| | | | |||||||||||| |||||||||||||||||||| |||| |    
T  30606 tgtgcttgagcattgagaagtctactagaagagtccttgagcaatttgtaatccaaagtaattatagtgaaaccccttggaagtgcaaggggattggact 30705  T
Q  279 actcctgttttgtaggaggaaccaatataaa 309  Q
    |||||| |||||  |||||||||||||||||    
T  30706 actccttttttgagggaggaaccaatataaa 30736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 179 - 300
Target Start/End: Complemental strand, 382302 - 382181
Alignment:
Q  179 tgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaaggggactggaat 278  Q
    |||||||||||||| ||||||||||||| |  |||||| ||||| ||||||||| || |||||||||||||||| ||| ||| |||||||||| |||| |    
T  382302 tgtgcttgagcattaagaagtctcttggaagagtccttgagcaatttgtaatcatgagtgattatagtgaaatctcttagaactgcaaggggagtggact 382203  T
Q  279 actcctgttttgtaggaggaac 300  Q
    |||||||| |||| | ||||||    
T  382202 actcctgtgttgtggaaggaac 382181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 382443 - 382405
Alignment:
Q  36 agcacctaggaagtctcagtcagttgtgattgagcaagg 74  Q
    ||||||||||||||||||||||||| ||||||||| |||    
T  382443 agcacctaggaagtctcagtcagttctgattgagctagg 382405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 270
Target Start/End: Original strand, 1144 - 1235
Alignment:
Q  179 tgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaagggg 270  Q
    |||||||||||||   |||||||||||| | |||||| |||||| ||| |||||  | ||||||||||||||||||||||| ||||||||||    
T  1144 tgtgcttgagcataaggaagtctcttggaagtgtcctctagcaatttgcaatcagtagtgattatagtgaaatcccttggatgtgcaagggg 1235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 270
Target Start/End: Original strand, 9207 - 9298
Alignment:
Q  179 tgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaatcccttggaagtgcaagggg 270  Q
    |||||||||||||   |||||||||||| | |||||| |||||| ||| |||||  | ||||||||||||||||||||||| ||||||||||    
T  9207 tgtgcttgagcataaggaagtctcttggaagtgtcctctagcaatttgcaatcagtagtgattatagtgaaatcccttggatgtgcaagggg 9298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 26122 - 26030
Alignment:
Q  1 gtgcttaagcatataattctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagcaaggtagagtcttaagcaattgt 93  Q
    |||||| |||| |||| |||||||||||||  |||||||| ||| |||||| |||||||||||||||||||| |   |||||||| |||||||    
T  26122 gtgcttgagcagataagtctcttggtgaaaaattgagcacttagaaagtcttagtcagttgtgattgagcaaagagaagtcttaatcaattgt 26030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 321
Target Start/End: Original strand, 33524 - 33610
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaag-gggactggaatactcctgttttgtaggaggaaccaatataaattgttgtgtctt 321  Q
    |||||||||||||||| ||||||||||||||| ||||||||| |||| | ||||||| | ||||||||  ||||||  |||||||||    
T  33524 tgattatagtgaaatctccttggaagtgcaagagggactggactacttccgttttgtggaaggaaccaggataaatgcttgtgtctt 33610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 8691 - 8758
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | ||||||| | ||||||||    
T  8691 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgtggaaggaacca 8758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 1522 - 1455
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | ||||||| | ||||||||    
T  1522 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgtggaaggaacca 1455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 37356 - 37423
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaacca 302  Q
    |||||||||||||||| |||||||||||||| |||||||||| |||| | ||||||| | ||||||||    
T  37356 tgattatagtgaaatctccttggaagtgcaagggggactggactacttccgttttgtggaaggaacca 37423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 321
Target Start/End: Original strand, 43147 - 43233
Alignment:
Q  237 tgattatagtgaaatc-ccttggaagtgcaa-ggggactggaatactcctgttttgtaggaggaaccaatataaattgttgtgtctt 321  Q
    |||||||||||||||| ||||| |||||||| |||||||||| |||| | ||||||| | ||||||||| |||| |  |||||||||    
T  43147 tgattatagtgaaatctccttgaaagtgcaagggggactggactacttccgttttgtggaaggaaccaagataactgcttgtgtctt 43233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 301
Target Start/End: Complemental strand, 16209 - 16085
Alignment:
Q  176 ttgtgtgcttgagcattgagaagtctcttgggaatgtcctttagcaaattgtaatcaagattgattatagtgaaa-tcccttggaagtgcaaggggactg 274  Q
    |||||||||||||||| | ||||||||||||   ||||||| ||||  |||||||||  | |||||||||||||| || ||| ||||||||||||| ||     
T  16209 ttgtgtgcttgagcatag-gaagtctcttggttgtgtccttgagcat-ttgtaatcattagtgattatagtgaaaatcactttgaagtgcaagggggctt 16112  T
Q  275 gaatactcctgttttgtaggaggaacc 301  Q
    || ||||| ||  ||||||||| ||||    
T  16111 gactactcttggattgtaggagaaacc 16085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 271
Target Start/End: Complemental strand, 135673 - 135640
Alignment:
Q  238 gattatagtgaaatcccttggaagtgcaagggga 271  Q
    |||||||||||||||||||||||||| |||||||    
T  135673 gattatagtgaaatcccttggaagtgtaagggga 135640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1551 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1551
Description:

Target: scaffold1551; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 300
Target Start/End: Original strand, 1051 - 1115
Alignment:
Q  237 tgattatagtgaaa-tcccttggaagtgcaaggggactggaatactcctgttttgtaggaggaac 300  Q
    |||||||||||||| || |||  ||||| |||||||||||| ||||||||  |||||||||||||    
T  1051 tgattatagtgaaactctcttataagtggaaggggactggactactcctggattgtaggaggaac 1115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University