View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16460_high_3 (Length: 513)
Name: NF16460_high_3
Description: NF16460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16460_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 13 - 495
Target Start/End: Complemental strand, 4176485 - 4176003
Alignment:
| Q |
13 |
tcatcatactagaagaagaagaataagaagtcggtttttgaaaccgaactatgaatcattccaaacgtcatagaaagttaaacttaaacgcgccaattat |
112 |
Q |
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| T |
4176485 |
tcatcatactagaagaagaagaataagaagtcggttttcgaaaccgaactatgaatcattccaaacgtcatagaaagttaaacttaaacgcgccaattat |
4176386 |
T |
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| Q |
113 |
gtcaacacgtcgtcttggttccgtcgttgcagacacatctttgtcatcaagttcattaggtacatttcaaaagacaagtgaaagagttccgttttcatgg |
212 |
Q |
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| T |
4176385 |
gtcaacacgtcgtcttggttccgtcgttgcagacacatctttgtcatcaagttcattaggtacatttcaaaagacaagtgaaagagttccgttttcatgg |
4176286 |
T |
|
| Q |
213 |
gagaaagaaccaggaaagccgaaagatacagagaggaatggctcgaaattaccaccctgccatcgtttgtttccacgaaaagaagcggctgatcaatctg |
312 |
Q |
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| T |
4176285 |
gagaaagaaccaggaaagccgaaagatacagagaggaatggctcgaaattaccaccctgccatcgtttgtttccacgaaaagaagcggctgatcaatctg |
4176186 |
T |
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| Q |
313 |
atgtagaaaatggttgtgatgaagaggattatattgacaataatgacgatctttactcagatgctatggatgatgtgttttctttatcagaagcattgga |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4176185 |
atgtagaaaatggttgtgatgaagaggattatattgacaataatgacgatctttactcagatgctatggatgatgtgttttctttatcagaagcattgga |
4176086 |
T |
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| Q |
413 |
tattgttcaaagaaaatcagagaaagctcatagtgataacaataatagtttgaagttaaagcttgcagagtgtagtggctacc |
495 |
Q |
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| T |
4176085 |
tattgttcaaagaaaatcagagaaagctcatagtgataacaataatagtttgaagttaaagcttgcagagtgcagtggctacc |
4176003 |
T |
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