View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16460_high_4 (Length: 463)
Name: NF16460_high_4
Description: NF16460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16460_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 429
Target Start/End: Original strand, 37425429 - 37425840
Alignment:
| Q |
18 |
aatccaaaacaaccaagaaagagaacacatgttcattaatatgattacaagagctgccgaacattaaattttgccgccaaagccttcaactttgttgtca |
117 |
Q |
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| T |
37425429 |
aatccaaaacaaccaagaaagagaacacatgttcattaatatgattacaagagctgccaaacattaaattttgccgccaaagccttcaactttgttgtca |
37425528 |
T |
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| Q |
118 |
tgaattatgaatagaaaaccaagctctaaacttggaaataagatccctcaacttattgcatactatttgtagcgcaatttttcaagtaaaataaatggat |
217 |
Q |
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| T |
37425529 |
tgaattatgaatagaaaaccaagctctaaacttggaaataagatccctcaacttattgcatactatttgtagcgcaatttttcaagtaaaataaatggat |
37425628 |
T |
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| Q |
218 |
acaaatttgnnnnnnngaagatgattctggtttttcttttctcgtctatagatctttgttaaaataaatcagccaaagtttattggtatgtatctcttgg |
317 |
Q |
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| T |
37425629 |
acaaatttgaaaaaaagaagatgattctggtttttcttttctcgtctatagatctttgttacaataaatcagccaaagtttattggtatgtatcacttgg |
37425728 |
T |
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| Q |
318 |
tcatttaattattcattccctactttcacctttcatcttattttttaagtgaagtttccttgcatttcaaatttaaataaatgtattatgctctcatgtt |
417 |
Q |
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| T |
37425729 |
tcatttaattattcattccctactttcacctttcatcttattttttaagtgaagtttccttgcatttcaaatttaaataaatgtattatgctctcatgtt |
37425828 |
T |
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| Q |
418 |
gaggactacatc |
429 |
Q |
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| T |
37425829 |
gaggactacatc |
37425840 |
T |
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Back To:
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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 422
Target Start/End: Complemental strand, 15962809 - 15962764
Alignment:
| Q |
375 |
ccttgcatttcaaatttaaataaatgtattatgctctcatgttgagga |
422 |
Q |
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| T |
15962809 |
ccttgcatttcaaatttaat--aatgtattatgctcccatgttgagga |
15962764 |
T |
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