View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16460_high_6 (Length: 440)
Name: NF16460_high_6
Description: NF16460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16460_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 31 - 394
Target Start/End: Complemental strand, 46126998 - 46126635
Alignment:
| Q |
31 |
tggccattcttggccaaagcatctggagccatgttcccttccctaagcacatgagagaaggaacactggatctgggaacaatattgcttacaattgtacc |
130 |
Q |
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| T |
46126998 |
tggccattcttggccaaagcatctggagccatgttcccttccctaagcacatgagagaaggaacactggatctgggaacaatattgcttacaattgtacc |
46126899 |
T |
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| Q |
131 |
atctagctgacattctccaagagacacttgcagaatttttagaggcattaaccactcctaaagagtcagttttccacaatgatgtcaggaaagtgaagct |
230 |
Q |
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| T |
46126898 |
atctagctgacattctccaagagacacttgcagaatttttagaggcattaaccactcctaaagagtcagttttccacaatgatgtcaggaaagtgaagct |
46126799 |
T |
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| Q |
231 |
ctttcgctttctcaatagcccgcagacacgcgcaaaactcagcttccaaagccgaagcatgcccaacattttgggtaaaagctcccaaaaatttggcatt |
330 |
Q |
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| T |
46126798 |
ctttcgctttctcaatagcccgcagacacgcgcaaaactcagcttccaaagccgaagcatgcccaacattttgggtaaaagctcccaaaaatttggcatt |
46126699 |
T |
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| Q |
331 |
atgatctctaataacaaacccaatggagccagcagatggactgtctatagaggagccatcacag |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46126698 |
atgatctctaataacaaacccaatggagccagcagatggactgtctatagaggagccatcacag |
46126635 |
T |
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