View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16460_high_7 (Length: 358)
Name: NF16460_high_7
Description: NF16460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16460_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 46126630 - 46126292
Alignment:
| Q |
1 |
ttttgacagtgccaataggagggggaacccaactagtttgatgaacttgaacaatcctactagctttgaaaggaatgccaaacagtcttgagatcttgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46126630 |
ttttgacagtgccaataggagggggaacccaactagtttgatgaacttgaacaatcctactagctttgaaaggaatgccaaacagtcttgagatcttgta |
46126531 |
T |
|
| Q |
101 |
atcagtcatagcggaggagcctttcacaatagccatatcaaaactaagctgaacttctgctatgatgctgtgaaacaaggtggccatggacttgtactga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46126530 |
atcagtcatagcggaggagcctttcacaatatccatatcaaaactaagctgaacttctgctatgatgctgtgaaacaaggtggccatggacttgtactga |
46126431 |
T |
|
| Q |
201 |
ttattgaaatatctggcatttctctccaaccatatactccatatagtatgaataatatcagtgttcataacctgctgcacaagtttgctccctattccca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46126430 |
ttattgaaatatctggcatttctctccaaccatatactccatatagtatgaataatatcagtgttcataacctgctgcacaagtttgctccctattccca |
46126331 |
T |
|
| Q |
301 |
gacggccaagaagcaaggaaagatagctagtgaggtcaa |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46126330 |
gacggccaagaagcaaggaaagatagctagtgaggtcaa |
46126292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University