View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16460_low_1 (Length: 681)

Name: NF16460_low_1
Description: NF16460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16460_low_1
NF16460_low_1
[»] chr3 (1 HSPs)
chr3 (10-665)||(7184315-7184975)


Alignment Details
Target: chr3 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 10 - 665
Target Start/End: Complemental strand, 7184975 - 7184315
Alignment:
Q  10 cagaacctgtgttgatcagtgtgtataatgaacttacaaattagtaagtaggttcaccatttcttcacttccaaggtgatggcgaacaagtctctaacaa 109  Q
    ||||| |||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7184975 cagaaactgtgttgatcagtttgtataatgaacttacgaattagtaagcaggttcaccatttcttcacttccaaggtgatggcgaacaagtctctaacaa 7184876  T
Q  110 aacatggcgcaacacctctttgatgttaggcaaaacctgactaggggccacaatcttggccttattgaagtaatcaaactctgcttggggggttt-tcaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  7184875 aacatggcgcaacacctctttgatgttaggcaaaacctgactaggggccacaatcttggccttattgaagtaatcaaactctgcttgggaggtttatcaa 7184776  T
Q  209 accattggaaagcatgcttctttaatagtgttgaggaaataaaaacttggggaatcaaaattagcttgcagtgtttcaaacctagattgcaaacggattt 308  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7184775 accattggaaaacatgcttctttaatagtgttgaggaaataaaaacttggggaatcaaaattagcttgcagtgtttcaaacctagattgcaaacggattt 7184676  T
Q  309 gtaatacaatgtaaccatggta-gggcactgaaacactatctccagcgttgcaaatggtcttttagagagaggatatacaccaagattcggtgcaaataa 407  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7184675 gtaatacaatgtaaccatggtaagggcactgaaacactatctccagcgttgcaagtggtcttttagagagaggatatacaccaagattcggtgcaaataa 7184576  T
Q  408 ggctagaaaagcgcgctcataatggattttaaatgcctg---aaatgggaaatctgtttaacagtaatggcattgagtgtacagtaatctacctagaatc 504  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7184575 ggctagaaaagcgcgctcataatggattttaaatgcctgctgaaatgggaaatctgtttaacagtaatggcattgagtgtacagtaatctacctagaatc 7184476  T
Q  505 tccaactagtttcttagagacaaacgtactaatcacttggcataacatctagatcaaataacttcccctccctagatcaaatactcaatgacatctttca 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7184475 tccaactagtttcttagagacaaacgtactaatcacttggcataacatctagatcaaataacttcccctccctagatcaaatactcaatgacatctttca 7184376  T
Q  605 actgcaaacagtcatctgtagcatggcttgaatacttgtggaatctgcattatttgctttt 665  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7184375 actgcaaacagtcatctgtagcatggcttgaatactggtggaatctgcattatttgctttt 7184315  T

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