View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16460_low_2 (Length: 633)

Name: NF16460_low_2
Description: NF16460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16460_low_2
NF16460_low_2
[»] chr2 (2 HSPs)
chr2 (150-616)||(8931612-8932085)
chr2 (16-64)||(8931478-8931526)
[»] chr4 (3 HSPs)
chr4 (420-502)||(49443576-49443658)
chr4 (412-473)||(50892220-50892281)
chr4 (412-473)||(48751378-48751439)
[»] chr8 (2 HSPs)
chr8 (412-473)||(31584881-31584942)
chr8 (425-481)||(18332040-18332096)
[»] chr3 (2 HSPs)
chr3 (412-493)||(36198899-36198980)
chr3 (433-470)||(23548584-23548621)
[»] chr1 (1 HSPs)
chr1 (412-495)||(43710570-43710653)
[»] chr5 (1 HSPs)
chr5 (412-502)||(43427779-43427869)
[»] chr7 (1 HSPs)
chr7 (414-494)||(253058-253137)


Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 150 - 616
Target Start/End: Original strand, 8931612 - 8932085
Alignment:
Q  150 ggatggcacgccagcttttgagatgagaaagcgattcagcactaaggtactctacaaggcttgctgttgcatttctcctgcttaagctttatcagcatac 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8931612 ggatggcacgccagcttttgagatgagaaagcgattcagcactaaggtactctacaaggcttgctgttgcatttctcctgcttaagctttatcagcatac 8931711  T
Q  250 aacacaacttaaa-------gagaaacccgcacacgctaaacattagatggaacacatgcgagtacacaccaaaaagagataaaaataacgcacagagtg 342  Q
    || ||||||||||       ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||    
T  8931712 aagacaacttaaaatatcaggagaaacccgcacacgccaaacattagatggaacacatgcgagtacacaccgaaaaaagataaaaataacgcacagattg 8931811  T
Q  343 aacgtggttcggcacttcatacctgctttcatgaaaacatctcagcataaagtatgcactgtaacctcaaggtgctaactcggtggtaagagtttagcat 442  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8931812 aacgtggttcggcacctcatacctgcattcatgaaaacatctcagcataaagtatgcactgtaacctcaaggtgctaactcggtggtaagagtttagcat 8931911  T
Q  443 tgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatggttattagtccaataattggattacatcaaagtaagacagcaaaccatg 542  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8931912 tgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatggttattagtccaataattggattacatcaaagtaagacagcaaaccatg 8932011  T
Q  543 tctactaaacatataaactcaatgtagcaaatcaaaacctcgctgtaaaatggtcaatacaagcagcatttgat 616  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8932012 tctactaaacaaataaactcaatgtagcaaatcaaaacctcgctgtaaaatggtcaatacaagcagcatttgat 8932085  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 8931478 - 8931526
Alignment:
Q  16 atcatcatactaaatgcttctccactcaacgagagaaacaattcattcc 64  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8931478 atcatcatactaaatgcttctccactcaacgagagaaacaattcattcc 8931526  T

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Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 420 - 502
Target Start/End: Complemental strand, 49443658 - 49443576
Alignment:
Q  420 actcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatggttattagt 502  Q
    |||| |||||||||||||||| |||||||| |||||| |  ||||||||||||| | ||||||| ||||||||||||||||||    
T  49443658 actctgtggtaagagtttagccttgtaacctcaaggtacaaagttcaaatcccctcggggacggttgtaaaatggttattagt 49443576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 412 - 473
Target Start/End: Original strand, 50892220 - 50892281
Alignment:
Q  412 aggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatcccc 473  Q
    |||||||| ||| |||||||||| ||||| |||||||| ||||||||||||||| |||||||    
T  50892220 aggtgctagctcagtggtaagagcttagccttgtaacctcaaggtgctgagttctaatcccc 50892281  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 473
Target Start/End: Complemental strand, 48751439 - 48751378
Alignment:
Q  412 aggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatcccc 473  Q
    |||||||| ||  |||| ||||| |||||||||||||| |||| |||||||||| |||||||    
T  48751439 aggtgctagctaagtggcaagagcttagcattgtaacctcaagttgctgagttcgaatcccc 48751378  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 412 - 473
Target Start/End: Original strand, 31584881 - 31584942
Alignment:
Q  412 aggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatcccc 473  Q
    |||||||| |||  ||||||||| |||||||||||||| |||||| ||||||||||||||||    
T  31584881 aggtgctagctcaatggtaagagcttagcattgtaacctcaaggtactgagttcaaatcccc 31584942  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 425 - 481
Target Start/End: Original strand, 18332040 - 18332096
Alignment:
Q  425 gtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggac 481  Q
    |||| ||||| |||||||||||||| |||||| ||||||| |||| ||| |||||||    
T  18332040 gtggcaagagcttagcattgtaacctcaaggtactgagtttaaataccctctgggac 18332096  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 412 - 493
Target Start/End: Complemental strand, 36198980 - 36198899
Alignment:
Q  412 aggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatg 493  Q
    |||||||| ||  |||||||||| ||||| |||||||| |||||| |||||||||||||||| | |||| || |||||||||    
T  36198980 aggtgctagcttagtggtaagagcttagccttgtaacctcaaggtactgagttcaaatcccctcggggatggttgtaaaatg 36198899  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 470
Target Start/End: Original strand, 23548584 - 23548621
Alignment:
Q  433 agtttagcattgtaaccgcaaggtgctgagttcaaatc 470  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  23548584 agtttagcattgtaacctcgaggtgctgagttcaaatc 23548621  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 495
Target Start/End: Original strand, 43710570 - 43710653
Alignment:
Q  412 aggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatggt 495  Q
    |||||||| | |||||||||||| ||||| |||||||| | ||||| ||||||| ||||||| | ||||| | ||| |||||||    
T  43710570 aggtgctagcacggtggtaagagattagccttgtaaccccgaggtgttgagttcgaatcccctcggggacagttgtgaaatggt 43710653  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 412 - 502
Target Start/End: Original strand, 43427779 - 43427869
Alignment:
Q  412 aggtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatggttattagt 502  Q
    |||||||| ||| ||||||||||||| || |||||||| |||||    ||||||||||||||   |  |||| ||||||||||||||||||    
T  43427779 aggtgctagctcagtggtaagagtttggccttgtaacctcaagggagggagttcaaatccccttggatacggttgtaaaatggttattagt 43427869  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 414 - 494
Target Start/End: Complemental strand, 253137 - 253058
Alignment:
Q  414 gtgctaactcggtggtaagagtttagcattgtaaccgcaaggtgctgagttcaaatccccactgggacggctgtaaaatgg 494  Q
    |||||| ||| |||||||||| ||||| ||||||||  ||||| |  ||||||||||||| | ||||||| ||||||||||    
T  253137 gtgctagctcagtggtaagagcttagccttgtaaccttaaggtacaaagttcaaatcccc-cggggacggttgtaaaatgg 253058  T

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